mRNA_F-serratus_M_contig143.3081.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig143.3081.1
Unique NamemRNA_F-serratus_M_contig143.3081.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig143.3081.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig143contigF-serratus_M_contig143:631425..638786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-28_003410.1
Exons4
Model size604
Cds size276
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig143.3081.1prot_F-serratus_M_contig143.3081.1Fucus serratus malepolypeptideF-serratus_M_contig143 636396..638786 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929416.2963738-UTR-F-serratus_M_contig143:631424..6314831622929416.2963738-UTR-F-serratus_M_contig143:631424..631483Fucus serratus maleUTRF-serratus_M_contig143 631425..631483 +
1690962841.7979705-UTR-F-serratus_M_contig143:631424..6314831690962841.7979705-UTR-F-serratus_M_contig143:631424..631483Fucus serratus maleUTRF-serratus_M_contig143 631425..631483 +
1622929416.316287-UTR-F-serratus_M_contig143:635545..6356691622929416.316287-UTR-F-serratus_M_contig143:635545..635669Fucus serratus maleUTRF-serratus_M_contig143 635546..635669 +
1690962841.809594-UTR-F-serratus_M_contig143:635545..6356691690962841.809594-UTR-F-serratus_M_contig143:635545..635669Fucus serratus maleUTRF-serratus_M_contig143 635546..635669 +
1622929416.3296611-UTR-F-serratus_M_contig143:636250..6363951622929416.3296611-UTR-F-serratus_M_contig143:636250..636395Fucus serratus maleUTRF-serratus_M_contig143 636251..636395 +
1690962841.818355-UTR-F-serratus_M_contig143:636250..6363951690962841.818355-UTR-F-serratus_M_contig143:636250..636395Fucus serratus maleUTRF-serratus_M_contig143 636251..636395 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929416.3485591-CDS-F-serratus_M_contig143:636395..6366001622929416.3485591-CDS-F-serratus_M_contig143:636395..636600Fucus serratus maleCDSF-serratus_M_contig143 636396..636600 +
1690962841.8271172-CDS-F-serratus_M_contig143:636395..6366001690962841.8271172-CDS-F-serratus_M_contig143:636395..636600Fucus serratus maleCDSF-serratus_M_contig143 636396..636600 +
1622929416.3605216-CDS-F-serratus_M_contig143:638715..6387861622929416.3605216-CDS-F-serratus_M_contig143:638715..638786Fucus serratus maleCDSF-serratus_M_contig143 638716..638786 +
1690962841.8361256-CDS-F-serratus_M_contig143:638715..6387861690962841.8361256-CDS-F-serratus_M_contig143:638715..638786Fucus serratus maleCDSF-serratus_M_contig143 638716..638786 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig143.3081.1

>prot_F-serratus_M_contig143.3081.1 ID=prot_F-serratus_M_contig143.3081.1|Name=mRNA_F-serratus_M_contig143.3081.1|organism=Fucus serratus male|type=polypeptide|length=92bp
MAAAMACLSASPSASAAVVARLAAALISVRGGGPTGNAPWEDRPYTYEHP
LQPPMEVVVGAGVVGAGTGHIVFRSLLASVGLGIGAMGLAAT
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mRNA from alignment at F-serratus_M_contig143:631425..638786+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig143.3081.1 ID=mRNA_F-serratus_M_contig143.3081.1|Name=mRNA_F-serratus_M_contig143.3081.1|organism=Fucus serratus male|type=mRNA|length=7362bp|location=Sequence derived from alignment at F-serratus_M_contig143:631425..638786+ (Fucus serratus male)
CACAGCTGTTCTTGGCCCTGTTCGGTGCTGAAGAAAGAGAAGCAAGTCTT
CTTTACCATGTGAGGAAAAATGACTATGATACCTTGTTATAATGCTTGCT
TTCGAACTTCGCCTAATCATGTGCAGAGTAAGAAGGTCAAAGACACGTCC
CTATGTTACCTCTGGGTAGATCCCTGCAGTCACATGCCGCGTTTGTCTCT
CCCATGGTGTCATCGCGTGCCTCTCTGATCCAAAAGTGGGCACAGTGGAG
GACAGTTATACGCATGTTGTTCTCCCGAATCTACATCTCGTTCACTTTAT
ATATTCTACGCAAAGTACTTCAACTATAATTCCATTGCTAATGTTGTAGT
TGAACAGAGTAAACTCTTCCTCTTCACGTAGGGTCTGCTACTTTGTACAA
GATATATTTAACCCGAGGTACTGCTAATTGTGCCACACCTAATGCTACTC
AGTTGTACCGGTACTCCAAATACTTCGGGGAATCCGTTTAAATGCCATGA
AGAGGTTTTGTCTTTGCAGCCTACATATGGTCCCACCTAAACGTTTTGAC
ATTTTCCCCCCTGACTGGAGGATGATCAGAAGGTCTGATGCGTTCAGGTT
TTTCTTTAAACTGGGGGATGCTCAGAAGGTCTAGACGCGTTCAGACTTTT
CTTCAAGCAGCAAAAACTGTAGTTTAAAGAAAAAGCAGAACTTGAACCGA
CTGTTCAGAGGGAAAAAAAAGGACCCGTACTGTGCGTGTTCCTCGTACGC
GTCGCCCTTTTCCCACACCCACTGTTTGGGGGTGCAGTAGTATGGATGGC
CGTCACTTATAGCACAGTATAGATCAATATCAGAGTATGGACCAACCGGG
TAAGGTTGCCAATCCTGTTCGTGGTCAGCTGAACAGGAAACATCCTTTTT
TCCATGTCCTCGTTCGCGCGGAGAATTCGGTTTCGCGACTCGCGAGACAG
GTTCGGCCGTCCCGTCCCGCGTCAGCCTGCTCATTGTCCACCCTCGGACT
GAACCTTGTGCTTACTAACGGGATTCCTCCCTCATTTTGCGATGGCGTCC
ATTTATTTACACCGTGGACCCAGAGGCGATACTCGTACCTGTACATTATA
CTAATATCATGTAGTTCTACACTCTGCCTCCGATACTGCGATATGTGTTT
GTGTTTATGTTGTTCGCAATAACCGATCGGGCCTCAACCATATACCCAGT
AATTTACGCGGTTGTCAATCCGGTACTACAGTGCGTGGTCACGAAGAGGT
ACGAAGGTCATAGGGTCGCATGATGGTGACACCCCGCTACTAAAACCAAC
CGGGATCCATATCGCGACAAAATTCTTGCCAAGTGCAACCGCCCGAGACA
ACACGGGCAACTTATCCGCGTCAACAGTATTGTTTTAGAATCTGAGTGAC
AAGTTACAGAGAAGACTGTCTGTGTGCTTCCCGAGGTCTACCGAAGTAAT
AAGAAAAGTGACTCAAAACGTTGTCCTAGCTTTTGGACGGTTACAAGAAA
ACAAGTTATACGACACACTTTACAAGGAGTGGAACCGGCCAATGTCAGAA
CGGTTCATCAAAACCTCCTTACTCCAAATGGAGAGCAACCCCGATCGACT
CGGATTGCTGTCGCCTACCCACGGCCAGCGCTCCTAGCAACAAAGCGGAC
AAATCACGCTCCAATCAGTTTTGATCAACAAGCCCAAGTTTTTCAAGACC
CCACGTCATGCAGAAGTAAGAAAAATTGTAGTACTGAGGTCCATGGCGGT
GGAGGCCTTGAGCCGGTGAAGCTGGCGCGCGAGCCAGCATCCACCCGTCC
AAAGTCCTGTGCATCCCTGATAAACGCTCCTAGAATCTTGCCCGTTCGCC
GCTCCTTGTTGGCTCTCGTAGGAAAAAACAGAACGTGGTCAGAGAACAGC
ATTCCCCTCAGAACCCACCCGGTGTACGCCTTTGGTTCTCGCTCACAAGG
ATTCAGCACTCCCCTGGGTCATCGACGATCGTGATCGAGCTGCCCTCCGC
CCTCGTCGAATCTGGCGTATTAATCTTGTACCGATATTATACCAATATTG
TACTAATATTATACCAATATTATACTGGGTGTAGGAAAAGAGGGGTGCAC
ATAAATTGGTCGATGGGGCTTCCTGAAAAAGCAGCGCCCGTTTGTTTGAG
CTACCTTAAGGTTTGCTGGCCCTTTGCCGGCGGTCTCTCGGCGGTGAACG
CCAATGATAAACGATTGGGTGACGTAATGAAGTCGGGACTGACCCCATGT
CTGTTTACGGTATGAATGGACGCTATACAGTATATAGTATATAGTATATA
ATATATAGTATGTATGTATACATGGTCATCACATATAGCAGAGTACGGAT
CGACCGGGTAAGGTTGCCAATCCTGCTTGTGGTAGTAACATGCGTGCGAA
AAGTGTCAGCCTGAGTACAATCGCGAAAAGTGAGAAGAAGAGGAAGCCAG
TGATCAAGCACCAGATTCAGCCTGGGCGTGGAAAATGAGCGGGCCGACGC
CGGACGGGACGGACGAACCCGTCTCGCGAGACGGAATTCTCAGGCGCAAC
ACGGGGACAGCGATTCCTCCAAACAAGAGTTGTCAACCATTCCCGATTGA
TCCATACTTTGCTACTTGTATACCTGGTATGCGATGACCGTACTATGCCA
GTTTTACCATTTTATGTGTTGTTTTACTCCTAGTGTCTTTACTCTTACTG
GCCAAATTGCCGTTGCCGTTCTCAAGTCAATGGCCGATGCGCATACGCTC
ACTCCACGAATCAACACTATGCCCAATGTTATGACAGGAGGCTGTCTGCC
GGCAAAAGTTGAACCAGCCCTTCTCTTTGCGTGGCCATCCGCCAATGGGT
TAGCTCGTTGTACGGTACGATGGCATAACGTACCACTTCCCCGGAAGCAT
CGCACTTCTAGGACTCTGCCGGGGCAGTCTGTTAGTCTAATAATATACTA
ATCGTTAGTCTTCTTAAGAGGTGCTGTAATGCTGCTTTAGGCCCTCGCGA
TATTTCTGTAGCGAAGGAGTGCAAACCGTGGAGGGAGCAGTCAACAGAGC
GGTAAAAGTAGCGCTCGGGTTCCTGCAATACGGTGTTCCCTGTTCCCTGT
TCCCTGTTCCCTCCCTGTTCCCTGTCGTCCTTGAGCCGGAGACAAGCGAT
CATCTTTATTCCAAGACATATCGTTATTACAAGGCAGATCTTTCGAGGCC
AGACATTGTCGGGGCATGCGCTCGATGATGCTCGATGATCGTTGTATCCC
ATATCGTATCATCTGAGGAGAGGAAGACGAGTTGTCTTTTGGCTCGTCGT
TCCTGCGCGTATCGCACATCCCTGGGCTAGCGACAATTCCATTCCATTCC
CAGTGTATCACAGTATGGTCGTCTTATAGCAGAGTATGGATCGAGCGGGT
ACAGTTGCCAATCCTGCTAGTGGTCAGCCTGAACAGGGAAAATGAATATT
CCCCTGTCCCAGTGCGTGCCTGAGAATTTGATCTCGCGAGACGGGCTCAG
CCGTCCCGTCCCGCGTCAGCCTGCTCATCTCCATACTCAGCCTGAATCTG
GTGCTTACTTAAGGGATTCCTCCCGAGTTCCGCGGCGGCGTTCATTTGTG
AAACCGCCGTACACCATTGGGTCAGTCCCGAGTTTATCGGGTCACGCAAT
TGCGTACCGATGACGTTCACTGCCGAGAGTCCGCCGGCACAGGGCCAGTA
AACCTCAAGGTAGTTCCGAACGAGTGCTGCCTTATAGCAGGTCACCATGG
ACCAATTAATATGCGCCTCTTTTTTCCACACCCACTATTGGTATGAAGTG
GGCATGTTGAAAGTAACGGTAGGACACTATGAGAGAAAGGGCGTTGCAAA
GAGTAGTAAGAAGTGGGGTGTTAATGTCTGTTCACGAGTGGATTCCCCTC
CTATATATCATATGTATCATATATATCATAGATAGTAATAGTATGAAATT
GTCGAAATGCACTTGACACGGCTTGTGCGTGGCAACGGATGTCTATTTTC
CATAGTAACATCAATAGCTAAAAATCCACGAAATGTTGCTCAAGGACTTG
AAATGTATGAGTTACTCAGAACAGCAGTTCGTGTTTGTTCGCGCCACTTG
GAATCCCTCATCCCTCATCAGAAACGGCGCAGAGAACTCTCCTGCTCACG
GTAGTTGAAGCGACCGCCCGTAGGGGTTGGGGGCTGGAGCGGGGCGAGGG
AAGCGTCTGAGCCGCTGGCACAAGAGACTGCTTAGTCATTTAGAGGTGCG
TCGACTCATGTAGTAGCAAGACAGGGTATACAATGGATACGTCGCTAGGT
ATCTAATTGGGCTACGCCATGTGTTCCTTTTTTAGGCCCCCCATGCCGGC
AAGACGCGGGGTTTCAGAGCAATGAAGCGGTTTTTTTTCACCTGTATCGT
CGTCCCACTCGTTGGCAAAACCCGTGCACGGATTAGTCGGAACATATTCT
ACGCGGCTGCCCCAGTTTTGACCGTATTTAGTACGGGACTGTCTCCTGCT
GCGACAAAATAAGTCACGGCGAAAATAGCCGTGGCCACTGCTCGTCCGAG
CTGCCGGCAGCAAGAAGCATCCCTCTGGATAGCAGATCGCATCGGCCAAG
TACGTTGCGTCTCCGTCCCGCGATGTCTACCCTGCGTGCGTTGCGTGAAG
ATCACTCTTTTAATATGTACATTATTATAAGTATATTTGGTACAAAACAA
ACACGAAGTAAAAACTGTCGTTGTGATATCGAGGGATTATACCGGGCGTA
AATATTCATCAAAATACTTAAAATTCCGTACGATTACGCTGTACGTATTT
TCCGATCTGGGTTATGACTGTATTAGATAGAAGGGAGGGGGAGAGGCGAA
GGCTCGCGAGAAAAAAGGAGGTTTCATCAGGCGGATTCCAAGACCAACTC
CCGTGCCGAGCATTCCAAGTAGGGAGGTTGGGAGAGCTGGGGGAGAGTTG
GGGCAGGGACACACGCAAACCATGGCCGCCGCCATGGCTTGCTTGTCTGC
GTCGCCATCTGCATCGGCGGCAGTCGTCGCACGGCTCGCCGCGGCCTTGA
TCTCCGTCAGGGGGGGTGGTCCTACCGGTAATGCCCCGTGGGAAGACCGA
CCGTATACCTACGAACACCCTCTTCAGCCGCCGATGGAGGTGGTGGTCGG
GGCTGGAGTCGTAGGAGCTGGGACTGGTGAGCGTTCTTCGCTTTTTTTTT
TACAGAAGGCGTTTTTGGTGTGCTTTGGATCCTTATGCAGCAAAATATAT
CCGAGAAGAGAGCTTAGGTCGCACCGATGTGTTGAAGCGGTGGGTTTCTT
CCCTTATACTGGTACATTATACGTTGACCCTATGCTACTACCTTCGGAAA
ACTAACTCGATTGAATACCCCGAAGAGTTTTTGACCTTGTAGCCTATGTT
CCTATTTAAACGTTTTGACCATTTCCCCCTCGTCTGGGTGAATGCTCTAA
TATATTGATATTAATACAGATAATAATATTGGTGTTAATATTGTTATTGA
TATTGATTTTAATGTTGATATTAATATTAGTATTAATATTTATATTCATA
TTGATATTCATATTGATATTAATTTTGATATTGATATTGATATTGATATT
GATATTAACAGAAGGTTCAGAAGCGTTCAGATCTTTCTTTAGATAATTTG
AAACGTAAAAAACCCTTGGAGAGGCATTTGAATTTATTGAGGATCGAGAT
CGCAAAATACGTCGATTGCATAGGTGTACGCAAATGCGTAAAAAAATGCG
TATCGCGTTGAACTCTCAACGACCACGGTATCTGTGGTCGAGAAGGCCCG
ACGTTGGTCGTTGAGTGGTGAGACGCGATGGCTTTTTGTACCTGTTATCA
TTTCCTTTTGGCGAACAGCGATTCAAACCCAACTCGTTGACACCGCTTTT
ATATTATCACCCAAACTCTCTCTTTTATTAATATTCATGTGCCGCGGCAC
ATGACCATTATAGCGGTCCATTTCTGCGAAGTCCAATGGGAAACCAGCAA
AAATACTCAATGTTCGAAAAAAGGGTAGGTATTTTTCGACGAACAAAAAA
TGGTCTCCGTCCCGACGCTTGCTCACGGAACAAGAAATCCGACGAAGTCG
AATCGGATCGGATCGGATCGGATCGGATCGGATCGGATCGAATCGAGCGA
ATAAAATCGGTTGTATAGTGTGTTGTCTTTTGTAGTGTAGTGTGTGGTTG
TGTCGAGGGAGAGGATCTTGCCTTCGCCGTGCGACTCTCACTTACTTCTA
CCCCCGCCCGTCTCCATGAACTGCTGCGGCCGGTCGGTCGACGAGGCGGA
GACAATTTTCATTTTCTGACCCCGATTCACGGCGTCGCAATGGAGTGTGC
CGTGCCACTTTTAATAACTACGAGTATTGGGCTGCGCTACGCCGGTTGAC
CCATGCTGCTCGAAATATACCGTACTGCAGCTATCAATAGTGACTAGCGA
TGTACCGTACCGAATAGCGCTGTACCGAGTGGAGCTCGTGTGGTACGGAG
TGGCTTCTGTTCCACCGAATATAAAGCCGATGTTGTACCGAATAACTCAT
ATACTGCGCCGTTCAAAGTCCATGTTGCGCCGAATGACTTATATTGCACC
GGATTCCCTACACACACATACACCCTAATTTAGGGAGAGTAAATGCGAAC
ATATTATTAGTACTAGTATTAGACTTGTCAGCACGACGGGTCCGGACTGC
GCGGTTATGTGCAATTTTAATAAATACGCACAATTTTAATAAATACGCAA
AACAAACACGCCCAACAAATGATAGAGGCGCGGTGACGAGGTCGAAAACG
GGGGAGATTGTTGGTCGACGATAGAGTATCGATACAGTAGATGCCGTCTC
GCGAGACCAAATTCTCAGGCTGCACGGGGACAGGAAAAAATATTCATTTT
CCCTGTTCAGCTGACCACGAGCAGGATTGGCAACCTTACCCGATTGCTTC
ATTCTCTTGATACATATGTGTGACCATACATGCCGACCGAGGCCAGCGAA
ACATCAATGAGGAAGCAGAGAGGGGAGTGGAAGGTGCTGGGGGATCACCG
AAGGACTGTATATGGGGGGTGTATCCTACTTTGTTTTGTCTCATTACAAC
AATCACTGAACAATCACTGATCATTGATCCCCTATTCCGAGGACCAATGC
AAATGACTATGAATAGCATAGCGGGACCCGATTGGGCGGTTGCGTTGGGG
TTATTGGTCATCACGTTCAGCGGATGCAATCTAGTGTCACACCGAAAAAA
AACACAACGACACATACGCGCGCGCGCCTGTTCTCCCACAGGTCACATTG
TGTTTCGTTCCCTCTTGGCGTCGGTGGGGCTAGGCATCGGAGCGATGGGA
TTGGCCGCCACC
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Coding sequence (CDS) from alignment at F-serratus_M_contig143:631425..638786+

>mRNA_F-serratus_M_contig143.3081.1 ID=mRNA_F-serratus_M_contig143.3081.1|Name=mRNA_F-serratus_M_contig143.3081.1|organism=Fucus serratus male|type=CDS|length=552bp|location=Sequence derived from alignment at F-serratus_M_contig143:631425..638786+ (Fucus serratus male)
ATGGCCGCCGCCATGGCTTGCTTGTCTGCGTCGCCATCTGCATCGGCGGC
AGTCGTCGCACGGCTCGCCGCGGCCTTGATCTCCGTCAGGGGGGGTGGTC
CTACCGGTAATGCCCCGTGGGAAGACCGACCGTATACCTACGAACACCCT
CTTCAGCCGCCGATGGAGGTGGTGGTCGGGGCTGGAGTCGTAGGAGCTGG
GACTGATGGCCGCCGCCATGGCTTGCTTGTCTGCGTCGCCATCTGCATCG
GCGGCAGTCGTCGCACGGCTCGCCGCGGCCTTGATCTCCGTCAGGGGGGG
TGGTCCTACCGGTAATGCCCCGTGGGAAGACCGACCGTATACCTACGAAC
ACCCTCTTCAGCCGCCGATGGAGGTGGTGGTCGGGGCTGGAGTCGTAGGA
GCTGGGACTGGTCACATTGTGTTTCGTTCCCTCTTGGCGTCGGTGGGGCT
AGGCATCGGAGCGATGGGATTGGCCGCCACCGTCACATTGTGTTTCGTTC
CCTCTTGGCGTCGGTGGGGCTAGGCATCGGAGCGATGGGATTGGCCGCCA
CC
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