mRNA_F-serratus_M_contig143.3078.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig143.3078.1
Unique NamemRNA_F-serratus_M_contig143.3078.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig143.3078.1 vs. uniprot
Match: D8LTN9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTN9_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 1.320e-14
Identity = 47/74 (63.51%), Postives = 58/74 (78.38%), Query Frame = 1 
Query:  379 PSPGVIGGAAVVGAGVGALVGGPLIAIGLGATAAGLSLSDNKAGDVARSTGRAGMAVVNKGKELNRRYGFGEKV 600
            P  GV+GGAA+VGA  G L+ GPL+AIGLGA AA   L  ++AGDVARSTG+AG+AVV KGKE+N +YG  +KV
Sbjct:   16 PPAGVVGGAALVGATTGLLLSGPLVAIGLGAGAAACCLRRDQAGDVARSTGQAGLAVVEKGKEINTQYGVADKV 89
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig143.3078.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTN9_ECTSI1.320e-1463.51Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig143contigF-serratus_M_contig143:581087..587748 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.7
Seed ortholog evalue2.7e-14
Seed eggNOG ortholog2880.D8LTN9
Hectar predicted targeting categoryother localisation
EggNOG OGs2E68G@1,2SCZE@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size2086
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig143.3078.1prot_F-serratus_M_contig143.3078.1Fucus serratus malepolypeptideF-serratus_M_contig143 582552..587436 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929415.7616012-UTR-F-serratus_M_contig143:581086..5825511622929415.7616012-UTR-F-serratus_M_contig143:581086..582551Fucus serratus maleUTRF-serratus_M_contig143 581087..582551 -
1690962841.5780973-UTR-F-serratus_M_contig143:581086..5825511690962841.5780973-UTR-F-serratus_M_contig143:581086..582551Fucus serratus maleUTRF-serratus_M_contig143 581087..582551 -
1622929415.9379992-UTR-F-serratus_M_contig143:587436..5877481622929415.9379992-UTR-F-serratus_M_contig143:587436..587748Fucus serratus maleUTRF-serratus_M_contig143 587437..587748 -
1690962841.615845-UTR-F-serratus_M_contig143:587436..5877481690962841.615845-UTR-F-serratus_M_contig143:587436..587748Fucus serratus maleUTRF-serratus_M_contig143 587437..587748 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929415.7757587-CDS-F-serratus_M_contig143:582551..5825751622929415.7757587-CDS-F-serratus_M_contig143:582551..582575Fucus serratus maleCDSF-serratus_M_contig143 582552..582575 -
1690962841.5881026-CDS-F-serratus_M_contig143:582551..5825751690962841.5881026-CDS-F-serratus_M_contig143:582551..582575Fucus serratus maleCDSF-serratus_M_contig143 582552..582575 -
1622929415.9147415-CDS-F-serratus_M_contig143:584348..5844411622929415.9147415-CDS-F-serratus_M_contig143:584348..584441Fucus serratus maleCDSF-serratus_M_contig143 584349..584441 -
1690962841.5977278-CDS-F-serratus_M_contig143:584348..5844411690962841.5977278-CDS-F-serratus_M_contig143:584348..584441Fucus serratus maleCDSF-serratus_M_contig143 584349..584441 -
1622929415.9246223-CDS-F-serratus_M_contig143:587244..5874361622929415.9246223-CDS-F-serratus_M_contig143:587244..587436Fucus serratus maleCDSF-serratus_M_contig143 587245..587436 -
1690962841.6068904-CDS-F-serratus_M_contig143:587244..5874361690962841.6068904-CDS-F-serratus_M_contig143:587244..587436Fucus serratus maleCDSF-serratus_M_contig143 587245..587436 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig143.3078.1

>prot_F-serratus_M_contig143.3078.1 ID=prot_F-serratus_M_contig143.3078.1|Name=mRNA_F-serratus_M_contig143.3078.1|organism=Fucus serratus male|type=polypeptide|length=103bp
MSHNNVNGRHNGGGPGQLGRGKPSPGVIGGAAVVGAGVGALVGGPLIAIG
LGATAAGLSLSDNKAGDVARSTGRAGMAVVNKGKELNRRYGFGEKVDREH
RR*
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mRNA from alignment at F-serratus_M_contig143:581087..587748-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig143.3078.1 ID=mRNA_F-serratus_M_contig143.3078.1|Name=mRNA_F-serratus_M_contig143.3078.1|organism=Fucus serratus male|type=mRNA|length=6662bp|location=Sequence derived from alignment at F-serratus_M_contig143:581087..587748- (Fucus serratus male)
GAAAAAGAAAGTACCGTTGGTCGTAAAACTTCGAATTCTTCAGCAAAATC
ATGCCGTTTCGAACCCCAGAGAAGTACTCGTACGGGTTCAAGGATGCCCA
AACGGTAATAGTACATATCAACGCAGCTCTCTCTTCACAAGGAGCACACG
CCACATGTTCAGTCACTCATTAGTCCATACACAGCAAGCTGTTTTTTGGC
GATAGGACTGAAGATTCGAGCATTTCCAGAGTACAATCGCGTCTCTCTAA
ACCGCCCCATCCTAGGCAATTATCTGCGCTCGTACCCAGCACCATCACCT
ACCCGACGACCCATGTCTCATAACAATGTTAACGGACGACACAATGGAGG
GGGACCAGGACAACTGGGAAGGGGTAAGCCATCGCCCGGAGTTATCGGGG
GTGCGGCAGTTGTCGGTGCTGGTGTAGGCGCCTTGGTCGGCGGGCCTTTG
ATCGCGATAGGTCTGGGGGCGACTGCGGCAGGACTGTCCCTCAGCGACAA
CAAGGTGAGAGAAACAATAACAGAACGAAAGCGCAAAAAGATTCATCCGG
AGAGGGCGCACGTGTTTGACTGAAAATATGTTCTTCTGGCAATTTGAAGC
GTTGTTCGTCGTGAGAAATTGGAAGTCGTTGCATTCGGCACGCCCTCAAG
GTGCTCCAAACTCCTGAAAAAAAGTAGCGTTCCGGCCCTTGCGCATTAGA
CTGCATACTGTCGTACTACTGGTAGCAGCACAATACAGTACCAGTAGTAC
AGCAGTCACCAGAGTAAATGTTTTGTTAAAAGTACAGTACAAACAGTATG
AATAGTCCAAAAAGCAGCTGCATCCACGGGCTCTAGCCGCGCTGAATTCT
ACAGTTCAACCAGGGCTACATTTTTTTTCAGCGTATTGGAATAAGCTAGG
CCGCTGAGCAGACTCTGGCTACGCCTTGTTATGTGTGAGTTTTGCCATTC
CACTGATGCTACTTATAGACCGATGTACCTCAAAAACGTGCTGTACAGGA
AATGCGACACGCAGAACGGGACGGCCGAACCTGTCTCGCGAGTCCAAATT
CTTTGGCGCGGACGGGGACATTTAGATATTTACAACCGCTCAGCAGACTC
TCGCTACGCCGCCGACCGTAGTACTGCCAGCGCCTCTGTGTGTACTTTTG
TAATTTCAAAGATGTTACTGTACCCCAAGAAATTGCTGTACATACGAATT
GCCAAAGGCAGGACGGGACGGCCGAACCTGTCTCGCGAGACCAAATTCTC
AGGCGCGTACAGTTCCTGTTTTGTTTGTATCTATCTCACTTACGGTCGAT
GGTGTTATGGAGTTATCCAACTCCCTGTAGATTCTTTGACGGCAGTATGT
GTCTCTCGCAGGAGACCAGGCGAAGGATGGATGTATCAGGGGGTATCTTC
GTTAACTTTCGTCCCTTGAAGTACCTACCGACTTACTCGTAGAAATGAAA
ACACGAGAAGTCAACACGTTTACCTACAAAATTACACGTTGCAGACTGAA
CAGGTGGGGGTTCACACCACCCTAGAATCACACAATTGCGCCGCATCCTA
CGACCAATCATCTATGATCACTAATATACGTCACGTTCCGAAGAACGCGC
CTGATCAGAAGGTTTAGGCGCGTTCGCATTTTTCTTTAAACACTACTGTA
TCACAATGGGCCTCAACGTGCTAGGTTACCGTCACCAATCCCACCTGCCA
TCCTGCCTGTGGTCACGAAGTATCTTACCATCTCTCCCCAGTTCTCGTCT
TGATGAATCTTTATTTGCGATGTATGGAGACAGGGAAATATTATATTTCT
CCAGTTGACCAGAGGGAGGATTGTCAACTATCCAGGTTGACGTCGAGTCT
GGAATTCAGTTCGGACACAACAAAATGCGGTACAGGCAGCAGTCGACCTT
GTGCGAGTACCCGGTATCCAGCAGTAGTGGTCCTTCTTCCATGCGCCCTA
CGTTGGCAGCCCGTTCAAAGACCGAGAAACGCTGAATACTTCGGCAGTAT
CGTACGAGGCACTGTCAGCTCTATATACTATTAATAGACTAGCTCAACAG
CAGTGTTCGTACGCAGTCCCTTGGATACTCATCCTGGAATATACTTTTGA
GGATTACAGAGGGACCGTATATACAGAGAGTGCTTCTCCTTTGTCGCGTC
TCATGAGAGGCTTTCGGGGCGGTAATAAGAGGCTTTCGGGGCGGTAACCG
CCATTTACCGTGCCCTTTGAGGCGGCCAAGCAAGAATACCTGGTACTACA
GTTGTAGCTTATCAATAAAATTATTATTATTATAACTTACAGATAGTAGC
ACGGCAAGGGCCTGATCGCGCAGTATTTGTAACTTTATGGATACACGGAC
ATACTGTACGCATACGCACCGGAGCATGGAGCAGAGAATGCAAGACGGTA
ATTTTGCAGTGCAGAGGGGATTACGCAATTTTCTTTAAAAAAGAAGGGTA
TCGCGTCTACCTGCAGTTTTCGTTAAAAACAATCAAGACAATCGAAACCA
CCATCGATCCATTGTGGGGATCAACGCGAGTATTATGTATTAGCATAGAA
CTTATGGGCAATGTAATAAATGCACACCCATCTTGTCAGCGGTTTTCGTT
ACGACCACGAGCGATGATCCTCCCAATGGGAGACGAGACCACTACGAGTT
AGCATAGCATACAAAATATCAGAGGTACGACAGGTGTTGAGTGCATTGGG
GGGCCCACCCCTCTTCGGGGGTCCCACCCTACTCTGCGGGTCCCTCCCCC
CTATATACATTTTTTATTTATTTATTTATTTTTTGCTATTAGGGTTAAGG
TTTGGGTTAGGGTTAGGGTTAGGGTTATTTTACTTTTGTGTTTTTAGGTT
TGGGTTAGGGTTAGGGTTTACCTTCGGAAGGCGTTCACAGGGCGGAAATC
TGGGGACCAAACGATACGTACGTTTTTTTATCCCCGCTCCCCCCCCATTC
TATTTTTAATATATATGAGGGTGGGGCCCCCCAATGCAGAAAGAGCCCCC
CAATGCACAACAGACAGGGCCGGATTGCGCCGCAGGTCCGTATTATAGAC
ATACATTCCTCAGTAATCACACTCCTTACGCATAAACACTTTCAAACTGA
GCATCAAACCAGCGTGTCTAGTGTTGGCAGGGTGAGATCTAGGCTGGAAG
GCATGACAGTACAAGACACCATGTGGCGCATCGTCCTCGCTTGTTAATGT
GCAAAGAACCGCATGATGCTATCCAGGTGTTGTCATCGTCGAATGATGCC
TGAGCAGCATATACTCGTATGACACTTATGAAGACCCCCCCCCCCTTTTG
TTTGCAGGCTGGAGACGTGGCTCGATCGACGGGGCGCGCAGGCATGGCGG
TGGTCAACAAAGGAAAAGAACTCAACCGACGTTACGGATTCGGCGAAAAG
GTGGGTGAGCTCGCGATGATCGACGGCAAGAGCTATTTGGCTCAGCTGAA
GCGATATTTATTTTGGGATGTTCCAACATTCTCTCAGAGTCGGAGAAATA
GTCTGCGCACATCGACGGCGTGCACGCGCAAAGATGCATTTTTCTGTAGT
ATGTGAGTACGACATACCAGGTACAGATTATCTGGCCTGGTTTCCCACAG
CGAAATACCAGTATTCCATATTTCCCCGTGGAGAAGTTGTGTTGTGAGAA
TTATACGTGTGGTGTAAGGCAAAACCAAAATTACCTATATATGTATATAT
ATATATATATAATAATTATAAGAAAATCCAGAACGCGCCTATACCTTCTG
AGCATCCTCCAGTCAGAAGAAAAAATGTCAAAACGTTTAGGTGAGTATAA
TCGGGGGGAAGCCCACCGTTATACTGTACTCTTACATTAATCGCCATGCA
GGGACACCATAAAAACTTTCAACAAACAAAAACATTGTATTATAGCATAC
CATAGTACATACCACAACCAAAACCATGCAAAAACAATGTAGTACGTAAT
TAGATAGGTTGTTGTACACAATATATCAGGCTAAAGTACAATACAGTACC
ACGGTAATAATAGTATACGATAATGTATATATGTATGTATGTATGGTCAC
ACATACAGCAAGAGTATGGATCAACCGGGTAAGGTTGCCAATCCTGCTCG
TGGTCAGCTGAACAAGGAAAATAATATTCCCCTGTCCGCGTTCGTGCCTG
ATAATTTGGTCTCGCGAGACGGTTTCGGCAGTTCTGTCCCGCGTCAGCCT
GCTCATCTCCATACTCAGTCTGAATCTGGTGCTTACTTACGGGATTCCTC
CCGAGTTCCGCGGCGGCGTCCATATATTTACATTAAACCGCCATACGCCA
TCGGGTAAGTCCCGAGTTTATCGGGTCACGCAATTGCGTACCGATGGCGT
TCACTGCCGAGAGTCCGCCGGCACAGGGCCAGCAAACCTCAAGGTAGTTC
CGAACGAGTGCTGCCTTAGCAGGTCACCATGGACCAATTAGTATACGCCT
CTCTTCCCCACACCCACTATGGGTATGAAGTGGTTATATCATGTTGAAAG
TAACGGCGGTAACAAATGCCATCGAACAATACCACAATACATTGTGAGCT
AGGGATTTTATACTATGTTGTCTACATGTATTCAGTACGTGTTCAGTATG
TGTTTGTATTCCATTCTCCTGTTAAATTTATTACACCCAGATGGTTAGTA
CAGGACAGTTATCAGTAGTGGTACATACGATTTGGTTAAAGCATTGACAA
GAGGACAGAGGACTATGATGTAGATATCTTCAAAATCCAGAAAGTGCAAG
GCCCCGTCATTCACCTGAAAGTTGACGAAGAGCAATGGAGGATCACACAA
GGAAGTAAGAGGCAAGCCCAGTGGGTATAGAAAACAGCATAGACAGAACA
GTACATCATCAAACAGTAAAGACGAATCCAATACAACATTAAAACGGGAA
CAGAGGACCATATCCAAGTACACGACACGATTCACCTCGAACTAGCCATG
AGTTGTCCTGAACGAACGCAGGTGTCAAAGGGAACAAGATGCCCATCAGT
TTATACTTGAAACCTTTCCCCACCCCCCGCCCCCCAATCATCAGAATTGT
GCTCTTTCGTGCCTCTGTCACTTTTTCGTAACTTGCTAATCACGATAACT
TTATACAGAGTTCCACCTCTGTTGCCGAACCTAACCCCCTGATGCCCCGC
CTTCGACGCTTGGTGTCGGCAAGGTTGACAGGGAGCACCGCCGCTAAAGG
GCGGGCGAGGCTATCGGGAACACCACGGAACGCGTAGCTGATGCGCTGTC
GGAGGAGGATAAGTCGGATGGAAAGGAATCCAAGCCAAAGGGCAACAAAT
AGCTATTAATATTCGATAGCCTATAGTAGCTACAGTGTATAGGCTATTTG
AGCAAGACGTGCAGAATGCGGGGTGCTGTACCTAGAATGTAATAAAATGC
AGATGTTGTCCGAGGAAGCTGCTTTGTGGAGGTCATCCTCGTTTGGTGCT
GCCGTTGAAGGGTATGGGTACAAATGTCGGTTGGGGAAAGAGCTGTGAGC
TTAACCCCGTGAGTCCCCGCGGCTCGTGGGATTTGCGTGTTCGCCCACCC
TTTTATGTTTGCGTGTTCGAGAGAAATCATGTGACCCTCCCCCCCCCACC
CCCTTGATGCGTGGGACTACGTTTGAAATTCTCGGGCGAGAAATGGCCTT
CCGAATCTTTTCCGTGCTTTGACTTTCAAATACACGCCCGAGTGAGGGGT
GTTATGCATTATTATATTAGCATAGAGGGTCCAAGGTGTCCGGAGCGCGC
TGTTCACGAGATAGATATTGATCCTGAAATTGATGAATCCGAGTGGTGTA
CTGCGGGCCTACGGCTGTAAAATTATATTTGGCGCACTCCTGCCGGTATT
TCACAGCACACGCCTTAACTGAGGCTCAGGAGAAAAGTTCGTGTCTTAAT
GGGAGGACATATAGGTATTGGGAGTCCGCACAACTTTGTAGAAAATGTAA
GACGTCCGTGCAACATGTGTTTCAGGAATGAGCGGTTGGTGCGCGGGGTT
TTTGTTTGGTCCCATCAAGTGGTTGACGACATTTGACAAACAAATAAACG
CCAACCGGCGAGGGCTCGTGCATTTGAAGATGCCTCCCGCCAGGCAAGTG
ACTTCCCCACCCAGACGCAAGTAGGGGTGGCGAAACCGTAGACGAGTTTT
GGCCGTTGATTCGAACGTGACTTAAAGCATCTTCAGTCCGTCGGGGCGTT
GACTTGTCGTGTGGATATGCGTATATATGTGTGTTTTCCGTGATTTCTTC
CCATCTATTCTGGACATCAATGGACGTACCAGCCGGGGTCACACAGGATT
TCTCATCCACTTTCCTTCTGCGGTGCGTGCCTTATTTTTTATCGCGAGAA
GGATTGAACGATTCCTTTCCCTCCTCGACCGTGAAGTCGAATTTTGTGTA
CTAACGAATTAATCGTTCTCCACCCGTTGGGCATTTTTATTTTAGTTTTT
TAGTTTTTAGTGAGAAAAATCTCATTTGCCGGAATCGAACTCACGTCCCA
ACGTGTCAGAGGGTTACGAGGTACCTCTGAGCTACCGGGGCGACCGCCCT
ATCTATATATATATTTGGGCATCTTGTTGTTGTTGTTTTCTTCACATTAA
ACGATGTAGTTTGTTGATGATTGGCGGCGTATCTTTTGTTTGGGCGCCAG
CTCTGCTGGTAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig143:581087..587748-

>mRNA_F-serratus_M_contig143.3078.1 ID=mRNA_F-serratus_M_contig143.3078.1|Name=mRNA_F-serratus_M_contig143.3078.1|organism=Fucus serratus male|type=CDS|length=618bp|location=Sequence derived from alignment at F-serratus_M_contig143:581087..587748- (Fucus serratus male)
ATGTCTCATAACAATGTTAACGGACGACACAATGGAGGGGGACCAGGACA
ACTGGGAAGGGGTAAGCCATCGCCCGGAGTTATCGGGGGTGCGGCAGTTG
TCGGTGCTGGTGTAGGCGCCTTGGTCGGCGGGCCTTTGATCGCGATAGGT
CTGGGGGCGACTGCGGCAGGACTGTCCCTCAGCGACAACAAGATGTCTCA
TAACAATGTTAACGGACGACACAATGGAGGGGGACCAGGACAACTGGGAA
GGGGTAAGCCATCGCCCGGAGTTATCGGGGGTGCGGCAGTTGTCGGTGCT
GGTGTAGGCGCCTTGGTCGGCGGGCCTTTGATCGCGATAGGTCTGGGGGC
GACTGCGGCAGGACTGTCCCTCAGCGACAACAAGGCTGGAGACGTGGCTC
GATCGACGGGGCGCGCAGGCATGGCGGTGGTCAACAAAGGAAAAGAACTC
AACCGACGTTACGGATTCGGCGAAAAGGCTGGAGACGTGGCTCGATCGAC
GGGGCGCGCAGGCATGGCGGTGGTCAACAAAGGAAAAGAACTCAACCGAC
GTTACGGATTCGGCGAAAAGGTTGACAGGGAGCACCGCCGCTAAGTTGAC
AGGGAGCACCGCCGCTAA
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