mRNA_F-serratus_M_contig143.3069.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig143.3069.1
Unique NamemRNA_F-serratus_M_contig143.3069.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig143.3069.1 vs. uniprot
Match: A0A6H5JEW8_9PHAE (53EXOc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEW8_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 1.240e-49
Identity = 78/106 (73.58%), Postives = 92/106 (86.79%), Query Frame = 3
Query:    3 VICSEDKDMCQLVGDRVHVMYRRSNGYGVLGAEEVQAKFGVKPASLPDLFGLAGDASDNIPGVRGIGPKSGSRLLERFGNLEGIFDGVDGVGSLGIRGSKGLQELL 320
            V+CS DKDMCQLV DRVHVM  R +GY +LG++EV AKFGV+P++LPDLFGL GD +DNIPGV+GIGPK GSRLLE+F  LEG+F G+DGVGS+GIRGSKGLQ LL
Sbjct:  145 VVCSSDKDMCQLVRDRVHVMQPRRDGYTILGSDEVLAKFGVQPSALPDLFGLIGDVADNIPGVKGIGPKGGSRLLEKFETLEGVFAGLDGVGSMGIRGSKGLQTLL 250          
BLAST of mRNA_F-serratus_M_contig143.3069.1 vs. uniprot
Match: A0A523PTW5_9BACT (Exodeoxyribonuclease IX n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A523PTW5_9BACT)

HSP 1 Score: 96.7 bits (239), Expect = 5.170e-22
Identity = 54/106 (50.94%), Postives = 70/106 (66.04%), Query Frame = 3
Query:    3 VICSEDKDMCQLVGDRVHVMYRRSNGYGVLGAEEVQAKFGVKPASLPDLFGLAGDASDNIPGVRGIGPKSGSRLLERFGNLEGIFDGVDGVGSLGIRGSKGLQELL 320
            ++ + DKD+ QLV  RV  M+  S G     A  V+AKFGV P  +PD  GLAGDA DNIPGVRGIGPK+ + LL+ FG+L+ +F  +D V +L IRG+K L   L
Sbjct:  130 LVVTPDKDLAQLVDARV-TMFDYSKGVRY-DAAAVRAKFGVAPRQVPDFLGLAGDAVDNIPGVRGIGPKTAAVLLDAFGDLDALFRRLDEVAALPIRGAKTLGAKL 233          
BLAST of mRNA_F-serratus_M_contig143.3069.1 vs. uniprot
Match: A0A7V4PPR6_9DELT (53EXOc domain-containing protein (Fragment) n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V4PPR6_9DELT)

HSP 1 Score: 94.0 bits (232), Expect = 3.940e-21
Identity = 47/106 (44.34%), Postives = 73/106 (68.87%), Query Frame = 3
Query:    3 VICSEDKDMCQLVGDRVHVMYRRSNGYGVLGAEEVQAKFGVKPASLPDLFGLAGDASDNIPGVRGIGPKSGSRLLERFGNLEGIFDGVDGVGSLGIRGSKGLQELL 320
            VI S DKD+ QLVGD + ++    + +  +G +EV+ KFGV+P  + ++ GL GDASDNIPGV+GIG KS S L++RF  LE +F+ +D +   G++G + +++ L
Sbjct:  142 VIVSGDKDLMQLVGDGIRLLDTAKDKW--IGPDEVREKFGVEPDKVIEVIGLMGDASDNIPGVKGIGEKSASGLIQRFRTLEYLFEHLDDLKQTGLKGVERVRKAL 245          
BLAST of mRNA_F-serratus_M_contig143.3069.1 vs. uniprot
Match: A0A1Y1RZ43_9SPIO (DNA polymerase I n=1 Tax=Marispirochaeta aestuarii TaxID=1963862 RepID=A0A1Y1RZ43_9SPIO)

HSP 1 Score: 96.3 bits (238), Expect = 5.790e-21
Identity = 52/108 (48.15%), Postives = 66/108 (61.11%), Query Frame = 3
Query:    3 VICSEDKDMCQLVGDRVHVMYR-RSNGYGVLGAEEVQAKFGVKPASLPDLFGLAGDASDNIPGVRGIGPKSGSRLLERFGNLEGIFDGVDGVGSLGIRGSKGLQELLR 323
            VI + DKD+ QLVG  V  M   +S GY  +G EEV  KFGV P  + D   L GD SDN+PGV+GIGPK    L+ RFG+LEGI++ +D +       S G QE L+
Sbjct:  131 VIITGDKDLMQLVGKSVSAMIPDKSGGYAEVGPEEVSEKFGVAPEQILDYLSLVGDQSDNVPGVKGIGPKGAVDLIRRFGSLEGIYENLDQL-------SPGQQEKLQ 231          
BLAST of mRNA_F-serratus_M_contig143.3069.1 vs. uniprot
Match: A0A518EZ41_9BACT (DNA polymerase I n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518EZ41_9BACT)

HSP 1 Score: 92.8 bits (229), Expect = 2.000e-20
Identity = 51/105 (48.57%), Postives = 68/105 (64.76%), Query Frame = 3
Query:    6 ICSEDKDMCQLVGDRVHVMYRRSNGYGVLGAEEVQAKFGVKPASLPDLFGLAGDASDNIPGVRGIGPKSGSRLLERFGNLEGIFDGVDGVGSLGIRGSKGLQELL 320
            + + DKD+ QLV DR    Y  + G   LG  EV+AKFGV P  + DL GLAGD+ D+IPGVRG+GPK+ + LLE F NLE I++ +  V  + +RG+K L   L
Sbjct:  146 VVTADKDLTQLVDDRTS-FYDFAKG-ARLGPAEVRAKFGVHPHQIRDLLGLAGDSVDDIPGVRGVGPKTATALLEHFENLEAIYEDLGRVKEVPLRGAKTLGAKL 248          
BLAST of mRNA_F-serratus_M_contig143.3069.1 vs. uniprot
Match: A0A7C4S2F5_9BACT (Flap endonuclease n=1 Tax=Lentisphaerae bacterium TaxID=1932692 RepID=A0A7C4S2F5_9BACT)

HSP 1 Score: 92.4 bits (228), Expect = 2.070e-20
Identity = 50/97 (51.55%), Postives = 65/97 (67.01%), Query Frame = 3
Query:    3 VICSEDKDMCQLVGDRVHVMYRRSNGYGVLGAEEVQAKFGVKPASLPDLFGLAGDASDNIPGVRGIGPKSGSRLLERFGNLEGIFDGVDGVGSLGIR 293
            ++ + DKD+ QLVG+RV V+     G   LG EEV+AK GV PA + D   LAGDASDNIPGV GIGPK+ ++LL  FG+ E +   V+ +GS  IR
Sbjct:  131 LLATGDKDLYQLVGERVRVIPVAGPGTA-LGPEEVRAKTGVAPAQIVDWLALAGDASDNIPGVPGIGPKTAAKLLNEFGSAEELLRRVEEIGSEKIR 226          
BLAST of mRNA_F-serratus_M_contig143.3069.1 vs. uniprot
Match: A0A4D6Y481_BUCMH (53EXOc domain-containing protein n=1 Tax=Buchnera aphidicola subsp. Melaphis rhois TaxID=118103 RepID=A0A4D6Y481_BUCMH)

HSP 1 Score: 92.0 bits (227), Expect = 3.800e-20
Identity = 45/106 (42.45%), Postives = 67/106 (63.21%), Query Frame = 3
Query:    3 VICSEDKDMCQLVGDRVHVMYRRSNGYGVLGAEEVQAKFGVKPASLPDLFGLAGDASDNIPGVRGIGPKSGSRLLERFGNLEGIFDGVDGVGSLGIRGSKGLQELL 320
            +I + DKD+ QLV     ++  +S    +LG EE++ K GV P  +PDLFGL GD SDNIPGV  IG K+   LL++FG+L+ I++  D +     RG+K + ++L
Sbjct:  134 LISTNDKDLGQLVNSHTSILEMKSKK--ILGEEEIKKKHGVIPTLIPDLFGLMGDKSDNIPGVSRIGEKTAICLLKKFGSLKNIYNNTDKISQCSFRGAKNIAKIL 237          
BLAST of mRNA_F-serratus_M_contig143.3069.1 vs. uniprot
Match: A0A7S1MNZ5_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1MNZ5_ALECA)

HSP 1 Score: 92.0 bits (227), Expect = 4.120e-20
Identity = 47/106 (44.34%), Postives = 67/106 (63.21%), Query Frame = 3
Query:    6 ICSEDKDMCQLVGDRVHVM-YRRSNGYGVLGAEEVQAKFGVKPASLPDLFGLAGDASDNIPGVRGIGPKSGSRLLERFGNLEGIFDGVDGVGSLGIRGSKGLQELL 320
            + S DKD+CQ+VG  V +  Y +   Y   G   V+++ GV+P  +PD  GLAGDA DNIPGV+G+GPK+   LL +F ++E IF G+  V  L +RG+ G+   L
Sbjct:  197 VVSSDKDLCQVVGPSVVLHDYAKGERYDAKG---VRSRLGVRPEQVPDFLGLAGDAVDNIPGVKGLGPKTAVALLAKFKDIEAIFSGLKRVEKLPLRGAAGVAARL 299          
BLAST of mRNA_F-serratus_M_contig143.3069.1 vs. uniprot
Match: A0A7X7QY85_9BACT (5'-3' exonuclease n=1 Tax=bacterium TaxID=1869227 RepID=A0A7X7QY85_9BACT)

HSP 1 Score: 90.9 bits (224), Expect = 8.160e-20
Identity = 43/89 (48.31%), Postives = 58/89 (65.17%), Query Frame = 3
Query:    3 VICSEDKDMCQLVGDRVHVMYRRSNGYGVLGAEEVQAKFGVKPASLPDLFGLAGDASDNIPGVRGIGPKSGSRLLERFGNLEGIFDGVD 269
            +I + DKD+CQLV D V ++      + V+ A  V  KFGV PA + D   L GDASDN+PGV+GIGPK+   LL R+G LE +F+ +D
Sbjct:  129 LIATSDKDLCQLVDDHVGILRAGLGEHEVIDASGVVRKFGVAPAQIVDYLTLVGDASDNVPGVQGIGPKTAVDLLTRYGTLESVFEHLD 217          
BLAST of mRNA_F-serratus_M_contig143.3069.1 vs. uniprot
Match: A0A172WDU6_BUCSC (53EXOc domain-containing protein n=1 Tax=Buchnera aphidicola subsp. Schlechtendalia chinensis TaxID=118110 RepID=A0A172WDU6_BUCSC)

HSP 1 Score: 90.9 bits (224), Expect = 9.540e-20
Identity = 43/106 (40.57%), Postives = 70/106 (66.04%), Query Frame = 3
Query:    3 VICSEDKDMCQLVGDRVHVMYRRSNGYGVLGAEEVQAKFGVKPASLPDLFGLAGDASDNIPGVRGIGPKSGSRLLERFGNLEGIFDGVDGVGSLGIRGSKGLQELL 320
            +I + DKD  QLV   + ++  +SN   +LG EE++ ++G+ P  +PDLFGL GD SDNIPG+ GIG K+ + LL+ FG+L+ I+   + + +  +RG+K + + L
Sbjct:  134 LISTNDKDFAQLVSINIKILETKSNK--ILGIEEMKKRYGINPTLIPDLFGLMGDRSDNIPGIPGIGKKTATFLLKTFGSLKNIYINTNEITNHPLRGAKNIVKKL 237          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig143.3069.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JEW8_9PHAE1.240e-4973.5853EXOc domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A523PTW5_9BACT5.170e-2250.94Exodeoxyribonuclease IX n=1 Tax=Planctomycetes bac... [more]
A0A7V4PPR6_9DELT3.940e-2144.3453EXOc domain-containing protein (Fragment) n=1 Ta... [more]
A0A1Y1RZ43_9SPIO5.790e-2148.15DNA polymerase I n=1 Tax=Marispirochaeta aestuarii... [more]
A0A518EZ41_9BACT2.000e-2048.57DNA polymerase I n=1 Tax=Planctomycetes bacterium ... [more]
A0A7C4S2F5_9BACT2.070e-2051.55Flap endonuclease n=1 Tax=Lentisphaerae bacterium ... [more]
A0A4D6Y481_BUCMH3.800e-2042.4553EXOc domain-containing protein n=1 Tax=Buchnera ... [more]
A0A7S1MNZ5_ALECA4.120e-2044.34Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A7X7QY85_9BACT8.160e-2048.315'-3' exonuclease n=1 Tax=bacterium TaxID=1869227 ... [more]
A0A172WDU6_BUCSC9.540e-2040.5753EXOc domain-containing protein n=1 Tax=Buchnera ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig143contigF-serratus_M_contig143:379918..381058 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score83.2
Seed ortholog evalue7.6e-14
Seed eggNOG ortholog1499967.BAYZ01000186_gene3985
Preferred namepolA
KEGG rclassRC02795
KEGG koko:K02335
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008408,GO:0008409,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0030312,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0040007,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0071944,GO:0090304,GO:0090305,GO:0097159,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576
EggNOG free text desc.In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
EggNOG OGs2NNKA@2323,COG0749@1,COG0749@2
EC2.7.7.7
COG Functional cat.L
Best tax levelunclassified Bacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Exons3
Model size323
Cds size297
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig143.3069.1prot_F-serratus_M_contig143.3069.1Fucus serratus malepolypeptideF-serratus_M_contig143 379918..381032 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929414.3598254-CDS-F-serratus_M_contig143:379917..3800541622929414.3598254-CDS-F-serratus_M_contig143:379917..380054Fucus serratus maleCDSF-serratus_M_contig143 379918..380054 -
1690962840.8772666-CDS-F-serratus_M_contig143:379917..3800541690962840.8772666-CDS-F-serratus_M_contig143:379917..380054Fucus serratus maleCDSF-serratus_M_contig143 379918..380054 -
1622929414.3733609-CDS-F-serratus_M_contig143:380536..3806491622929414.3733609-CDS-F-serratus_M_contig143:380536..380649Fucus serratus maleCDSF-serratus_M_contig143 380537..380649 -
1690962840.8967342-CDS-F-serratus_M_contig143:380536..3806491690962840.8967342-CDS-F-serratus_M_contig143:380536..380649Fucus serratus maleCDSF-serratus_M_contig143 380537..380649 -
1622929414.3847697-CDS-F-serratus_M_contig143:380985..3810321622929414.3847697-CDS-F-serratus_M_contig143:380985..381032Fucus serratus maleCDSF-serratus_M_contig143 380986..381032 -
1690962840.9056208-CDS-F-serratus_M_contig143:380985..3810321690962840.9056208-CDS-F-serratus_M_contig143:380985..381032Fucus serratus maleCDSF-serratus_M_contig143 380986..381032 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929414.395708-UTR-F-serratus_M_contig143:381032..3810581622929414.395708-UTR-F-serratus_M_contig143:381032..381058Fucus serratus maleUTRF-serratus_M_contig143 381033..381058 -
1690962840.9143915-UTR-F-serratus_M_contig143:381032..3810581690962840.9143915-UTR-F-serratus_M_contig143:381032..381058Fucus serratus maleUTRF-serratus_M_contig143 381033..381058 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig143.3069.1

>prot_F-serratus_M_contig143.3069.1 ID=prot_F-serratus_M_contig143.3069.1|Name=mRNA_F-serratus_M_contig143.3069.1|organism=Fucus serratus male|type=polypeptide|length=99bp
MCQLVGDRVHVMYRRSNGYGVLGAEEVQAKFGVKPASLPDLFGLAGDASD
NIPGVRGIGPKSGSRLLERFGNLEGIFDGVDGVGSLGIRGSKGLQELLR
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mRNA from alignment at F-serratus_M_contig143:379918..381058-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig143.3069.1 ID=mRNA_F-serratus_M_contig143.3069.1|Name=mRNA_F-serratus_M_contig143.3069.1|organism=Fucus serratus male|type=mRNA|length=1141bp|location=Sequence derived from alignment at F-serratus_M_contig143:379918..381058- (Fucus serratus male)
TGGTGATTTGTTCCGAGGACAAGGATATGTGTCAGCTTGTCGGGGATCGG GTGCACGTCATGTATCGTCGTAGGTGGGCTGACTTCCTCTCCTCCGAGAC GGTATGTTGGGTGCGCCTGCAAGCATCCGTTGCGGATTTGAGTCCTTTGT GACGAGGTTCTGGGGGTGTACCGCGATGAAGAGGCGAGCGGTACAAGATA TACAGAGAGGACGATTTGTCGGGTTGGGGTTGATCTCGAGTGACGGTTTT CGGTTGGAGCGATAGAAGCGATGAGTTGGTGGGGTGATCGTTGCAGCGAA AAGCCTCACGGGTTGATTAAAAGCCCCAGCCGATTCGAGAACCGTGACTT GCGACAAAGATAGATCTCCATTTGAATATTGACTCGAAAAACGCCTCCTC TTTTCGTAGCAACGGTTACGGCGTCCTGGGGGCGGAGGAAGTGCAGGCAA AGTTCGGCGTGAAGCCAGCCTCTCTGCCAGATCTCTTCGGCCTAGCAGGG GATGCTTCAGACAATATACCCGGTGAGTACACGCCGAGAAGTTTTCCACC AATCACCTGGTTTCCCCGCGCACGAGATTCAGCTTACGACTGGTATACGT CCAACATTTTCCTCAGCTACGGTTATACAGCAGATGATAGTTGCTCAGAT CTTTGCTGGGTGGATGGGTGGAGCCTATTATGTCATCACGTCATGAATGA AACACTAAGACGGAGAAAAACTAAAAGGTCTTCTTTTGTTACGATTTTTG TTTTTTGACTCGCTACTGAGAGACGATTCTCGTTCGAATCCGCGTCATAG GTTGCGCCAGGCCGCGATTTTTGTCTATTTTTACAGTAACCGCGATAGAC GCACCGCGATGGCAAAAAAGGGAGTAAGTTTCCTCTTTCGAATAAAAAAG CTCTGGATCGTTTTGAGGTTTCCATGTACATTAGACTCGGGTCGACCACG AGAACCCCCGATCGTGATCGTGCTGATGGATCGACACGACCGATGCCTCT TCAGGGGTGCGAGGCATTGGTCCAAAGAGCGGTTCCCGTCTACTGGAGCG CTTCGGCAATCTGGAAGGCATTTTCGATGGTGTGGATGGCGTCGGCAGCC TGGGAATACGGGGATCGAAAGGCCTCCAAGAATTGCTCAGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig143:379918..381058-

>mRNA_F-serratus_M_contig143.3069.1 ID=mRNA_F-serratus_M_contig143.3069.1|Name=mRNA_F-serratus_M_contig143.3069.1|organism=Fucus serratus male|type=CDS|length=594bp|location=Sequence derived from alignment at F-serratus_M_contig143:379918..381058- (Fucus serratus male)
ATGTGTCAGCTTGTCGGGGATCGGGTGCACGTCATGTATCGTCGTAGATG
TGTCAGCTTGTCGGGGATCGGGTGCACGTCATGTATCGTCGTAGCAACGG
TTACGGCGTCCTGGGGGCGGAGGAAGTGCAGGCAAAGTTCGGCGTGAAGC
CAGCCTCTCTGCCAGATCTCTTCGGCCTAGCAGGGGATGCTTCAGACAAT
ATACCCGCAACGGTTACGGCGTCCTGGGGGCGGAGGAAGTGCAGGCAAAG
TTCGGCGTGAAGCCAGCCTCTCTGCCAGATCTCTTCGGCCTAGCAGGGGA
TGCTTCAGACAATATACCCGGGGTGCGAGGCATTGGTCCAAAGAGCGGTT
CCCGTCTACTGGAGCGCTTCGGCAATCTGGAAGGCATTTTCGATGGTGTG
GATGGCGTCGGCAGCCTGGGAATACGGGGATCGAAAGGCCTCCAAGAATT
GCTCAGGGGGTGCGAGGCATTGGTCCAAAGAGCGGTTCCCGTCTACTGGA
GCGCTTCGGCAATCTGGAAGGCATTTTCGATGGTGTGGATGGCGTCGGCA
GCCTGGGAATACGGGGATCGAAAGGCCTCCAAGAATTGCTCAGG
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