mRNA_F-serratus_M_contig143.3069.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig143.3069.1 vs. uniprot
Match: A0A6H5JEW8_9PHAE (53EXOc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEW8_9PHAE) HSP 1 Score: 167 bits (423), Expect = 1.240e-49 Identity = 78/106 (73.58%), Postives = 92/106 (86.79%), Query Frame = 3
Query: 3 VICSEDKDMCQLVGDRVHVMYRRSNGYGVLGAEEVQAKFGVKPASLPDLFGLAGDASDNIPGVRGIGPKSGSRLLERFGNLEGIFDGVDGVGSLGIRGSKGLQELL 320
V+CS DKDMCQLV DRVHVM R +GY +LG++EV AKFGV+P++LPDLFGL GD +DNIPGV+GIGPK GSRLLE+F LEG+F G+DGVGS+GIRGSKGLQ LL
Sbjct: 145 VVCSSDKDMCQLVRDRVHVMQPRRDGYTILGSDEVLAKFGVQPSALPDLFGLIGDVADNIPGVKGIGPKGGSRLLEKFETLEGVFAGLDGVGSMGIRGSKGLQTLL 250
BLAST of mRNA_F-serratus_M_contig143.3069.1 vs. uniprot
Match: A0A523PTW5_9BACT (Exodeoxyribonuclease IX n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A523PTW5_9BACT) HSP 1 Score: 96.7 bits (239), Expect = 5.170e-22 Identity = 54/106 (50.94%), Postives = 70/106 (66.04%), Query Frame = 3
Query: 3 VICSEDKDMCQLVGDRVHVMYRRSNGYGVLGAEEVQAKFGVKPASLPDLFGLAGDASDNIPGVRGIGPKSGSRLLERFGNLEGIFDGVDGVGSLGIRGSKGLQELL 320
++ + DKD+ QLV RV M+ S G A V+AKFGV P +PD GLAGDA DNIPGVRGIGPK+ + LL+ FG+L+ +F +D V +L IRG+K L L
Sbjct: 130 LVVTPDKDLAQLVDARV-TMFDYSKGVRY-DAAAVRAKFGVAPRQVPDFLGLAGDAVDNIPGVRGIGPKTAAVLLDAFGDLDALFRRLDEVAALPIRGAKTLGAKL 233
BLAST of mRNA_F-serratus_M_contig143.3069.1 vs. uniprot
Match: A0A7V4PPR6_9DELT (53EXOc domain-containing protein (Fragment) n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V4PPR6_9DELT) HSP 1 Score: 94.0 bits (232), Expect = 3.940e-21 Identity = 47/106 (44.34%), Postives = 73/106 (68.87%), Query Frame = 3
Query: 3 VICSEDKDMCQLVGDRVHVMYRRSNGYGVLGAEEVQAKFGVKPASLPDLFGLAGDASDNIPGVRGIGPKSGSRLLERFGNLEGIFDGVDGVGSLGIRGSKGLQELL 320
VI S DKD+ QLVGD + ++ + + +G +EV+ KFGV+P + ++ GL GDASDNIPGV+GIG KS S L++RF LE +F+ +D + G++G + +++ L
Sbjct: 142 VIVSGDKDLMQLVGDGIRLLDTAKDKW--IGPDEVREKFGVEPDKVIEVIGLMGDASDNIPGVKGIGEKSASGLIQRFRTLEYLFEHLDDLKQTGLKGVERVRKAL 245
BLAST of mRNA_F-serratus_M_contig143.3069.1 vs. uniprot
Match: A0A1Y1RZ43_9SPIO (DNA polymerase I n=1 Tax=Marispirochaeta aestuarii TaxID=1963862 RepID=A0A1Y1RZ43_9SPIO) HSP 1 Score: 96.3 bits (238), Expect = 5.790e-21 Identity = 52/108 (48.15%), Postives = 66/108 (61.11%), Query Frame = 3
Query: 3 VICSEDKDMCQLVGDRVHVMYR-RSNGYGVLGAEEVQAKFGVKPASLPDLFGLAGDASDNIPGVRGIGPKSGSRLLERFGNLEGIFDGVDGVGSLGIRGSKGLQELLR 323
VI + DKD+ QLVG V M +S GY +G EEV KFGV P + D L GD SDN+PGV+GIGPK L+ RFG+LEGI++ +D + S G QE L+
Sbjct: 131 VIITGDKDLMQLVGKSVSAMIPDKSGGYAEVGPEEVSEKFGVAPEQILDYLSLVGDQSDNVPGVKGIGPKGAVDLIRRFGSLEGIYENLDQL-------SPGQQEKLQ 231
BLAST of mRNA_F-serratus_M_contig143.3069.1 vs. uniprot
Match: A0A518EZ41_9BACT (DNA polymerase I n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518EZ41_9BACT) HSP 1 Score: 92.8 bits (229), Expect = 2.000e-20 Identity = 51/105 (48.57%), Postives = 68/105 (64.76%), Query Frame = 3
Query: 6 ICSEDKDMCQLVGDRVHVMYRRSNGYGVLGAEEVQAKFGVKPASLPDLFGLAGDASDNIPGVRGIGPKSGSRLLERFGNLEGIFDGVDGVGSLGIRGSKGLQELL 320
+ + DKD+ QLV DR Y + G LG EV+AKFGV P + DL GLAGD+ D+IPGVRG+GPK+ + LLE F NLE I++ + V + +RG+K L L
Sbjct: 146 VVTADKDLTQLVDDRTS-FYDFAKG-ARLGPAEVRAKFGVHPHQIRDLLGLAGDSVDDIPGVRGVGPKTATALLEHFENLEAIYEDLGRVKEVPLRGAKTLGAKL 248
BLAST of mRNA_F-serratus_M_contig143.3069.1 vs. uniprot
Match: A0A7C4S2F5_9BACT (Flap endonuclease n=1 Tax=Lentisphaerae bacterium TaxID=1932692 RepID=A0A7C4S2F5_9BACT) HSP 1 Score: 92.4 bits (228), Expect = 2.070e-20 Identity = 50/97 (51.55%), Postives = 65/97 (67.01%), Query Frame = 3
Query: 3 VICSEDKDMCQLVGDRVHVMYRRSNGYGVLGAEEVQAKFGVKPASLPDLFGLAGDASDNIPGVRGIGPKSGSRLLERFGNLEGIFDGVDGVGSLGIR 293
++ + DKD+ QLVG+RV V+ G LG EEV+AK GV PA + D LAGDASDNIPGV GIGPK+ ++LL FG+ E + V+ +GS IR
Sbjct: 131 LLATGDKDLYQLVGERVRVIPVAGPGTA-LGPEEVRAKTGVAPAQIVDWLALAGDASDNIPGVPGIGPKTAAKLLNEFGSAEELLRRVEEIGSEKIR 226
BLAST of mRNA_F-serratus_M_contig143.3069.1 vs. uniprot
Match: A0A4D6Y481_BUCMH (53EXOc domain-containing protein n=1 Tax=Buchnera aphidicola subsp. Melaphis rhois TaxID=118103 RepID=A0A4D6Y481_BUCMH) HSP 1 Score: 92.0 bits (227), Expect = 3.800e-20 Identity = 45/106 (42.45%), Postives = 67/106 (63.21%), Query Frame = 3
Query: 3 VICSEDKDMCQLVGDRVHVMYRRSNGYGVLGAEEVQAKFGVKPASLPDLFGLAGDASDNIPGVRGIGPKSGSRLLERFGNLEGIFDGVDGVGSLGIRGSKGLQELL 320
+I + DKD+ QLV ++ +S +LG EE++ K GV P +PDLFGL GD SDNIPGV IG K+ LL++FG+L+ I++ D + RG+K + ++L
Sbjct: 134 LISTNDKDLGQLVNSHTSILEMKSKK--ILGEEEIKKKHGVIPTLIPDLFGLMGDKSDNIPGVSRIGEKTAICLLKKFGSLKNIYNNTDKISQCSFRGAKNIAKIL 237
BLAST of mRNA_F-serratus_M_contig143.3069.1 vs. uniprot
Match: A0A7S1MNZ5_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1MNZ5_ALECA) HSP 1 Score: 92.0 bits (227), Expect = 4.120e-20 Identity = 47/106 (44.34%), Postives = 67/106 (63.21%), Query Frame = 3
Query: 6 ICSEDKDMCQLVGDRVHVM-YRRSNGYGVLGAEEVQAKFGVKPASLPDLFGLAGDASDNIPGVRGIGPKSGSRLLERFGNLEGIFDGVDGVGSLGIRGSKGLQELL 320
+ S DKD+CQ+VG V + Y + Y G V+++ GV+P +PD GLAGDA DNIPGV+G+GPK+ LL +F ++E IF G+ V L +RG+ G+ L
Sbjct: 197 VVSSDKDLCQVVGPSVVLHDYAKGERYDAKG---VRSRLGVRPEQVPDFLGLAGDAVDNIPGVKGLGPKTAVALLAKFKDIEAIFSGLKRVEKLPLRGAAGVAARL 299
BLAST of mRNA_F-serratus_M_contig143.3069.1 vs. uniprot
Match: A0A7X7QY85_9BACT (5'-3' exonuclease n=1 Tax=bacterium TaxID=1869227 RepID=A0A7X7QY85_9BACT) HSP 1 Score: 90.9 bits (224), Expect = 8.160e-20 Identity = 43/89 (48.31%), Postives = 58/89 (65.17%), Query Frame = 3
Query: 3 VICSEDKDMCQLVGDRVHVMYRRSNGYGVLGAEEVQAKFGVKPASLPDLFGLAGDASDNIPGVRGIGPKSGSRLLERFGNLEGIFDGVD 269
+I + DKD+CQLV D V ++ + V+ A V KFGV PA + D L GDASDN+PGV+GIGPK+ LL R+G LE +F+ +D
Sbjct: 129 LIATSDKDLCQLVDDHVGILRAGLGEHEVIDASGVVRKFGVAPAQIVDYLTLVGDASDNVPGVQGIGPKTAVDLLTRYGTLESVFEHLD 217
BLAST of mRNA_F-serratus_M_contig143.3069.1 vs. uniprot
Match: A0A172WDU6_BUCSC (53EXOc domain-containing protein n=1 Tax=Buchnera aphidicola subsp. Schlechtendalia chinensis TaxID=118110 RepID=A0A172WDU6_BUCSC) HSP 1 Score: 90.9 bits (224), Expect = 9.540e-20 Identity = 43/106 (40.57%), Postives = 70/106 (66.04%), Query Frame = 3
Query: 3 VICSEDKDMCQLVGDRVHVMYRRSNGYGVLGAEEVQAKFGVKPASLPDLFGLAGDASDNIPGVRGIGPKSGSRLLERFGNLEGIFDGVDGVGSLGIRGSKGLQELL 320
+I + DKD QLV + ++ +SN +LG EE++ ++G+ P +PDLFGL GD SDNIPG+ GIG K+ + LL+ FG+L+ I+ + + + +RG+K + + L
Sbjct: 134 LISTNDKDFAQLVSINIKILETKSNK--ILGIEEMKKRYGINPTLIPDLFGLMGDRSDNIPGIPGIGKKTATFLLKTFGSLKNIYINTNEITNHPLRGAKNIVKKL 237 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig143.3069.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig143.3069.1 >prot_F-serratus_M_contig143.3069.1 ID=prot_F-serratus_M_contig143.3069.1|Name=mRNA_F-serratus_M_contig143.3069.1|organism=Fucus serratus male|type=polypeptide|length=99bp MCQLVGDRVHVMYRRSNGYGVLGAEEVQAKFGVKPASLPDLFGLAGDASDback to top mRNA from alignment at F-serratus_M_contig143:379918..381058- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig143.3069.1 ID=mRNA_F-serratus_M_contig143.3069.1|Name=mRNA_F-serratus_M_contig143.3069.1|organism=Fucus serratus male|type=mRNA|length=1141bp|location=Sequence derived from alignment at F-serratus_M_contig143:379918..381058- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig143:379918..381058- >mRNA_F-serratus_M_contig143.3069.1 ID=mRNA_F-serratus_M_contig143.3069.1|Name=mRNA_F-serratus_M_contig143.3069.1|organism=Fucus serratus male|type=CDS|length=594bp|location=Sequence derived from alignment at F-serratus_M_contig143:379918..381058- (Fucus serratus male)back to top |