mRNA_F-serratus_M_contig143.3068.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig143.3068.1
Unique NamemRNA_F-serratus_M_contig143.3068.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig143.3068.1 vs. uniprot
Match: A0A835ZAX9_9STRA (5'-3' exonuclease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAX9_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.630e-6
Identity = 23/52 (44.23%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    1 MLYREIATLHDQVPIEGVEDLSSNFLLYRGASPQAEGVMEVLGFTAPLRMIQ 156
            +L + +ATL + VP+EG+  L S+ L Y G S +A  V+++LGF+ PLRM++
Sbjct:   95 LLCKLVATLREDVPLEGLATLKSSHLRYAGPSAEARKVLKILGFSTPLRMLE 146
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig143.3068.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZAX9_9STRA1.630e-644.235'-3' exonuclease n=1 Tax=Tribonema minus TaxID=30... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig143contigF-serratus_M_contig143:370974..378567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size290
Cds size186
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig143.3068.1prot_F-serratus_M_contig143.3068.1Fucus serratus malepolypeptideF-serratus_M_contig143 371078..378567 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929414.2941697-UTR-F-serratus_M_contig143:370973..3710771622929414.2941697-UTR-F-serratus_M_contig143:370973..371077Fucus serratus maleUTRF-serratus_M_contig143 370974..371077 -
1690962840.8391085-UTR-F-serratus_M_contig143:370973..3710771690962840.8391085-UTR-F-serratus_M_contig143:370973..371077Fucus serratus maleUTRF-serratus_M_contig143 370974..371077 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929414.3083298-CDS-F-serratus_M_contig143:371077..3712271622929414.3083298-CDS-F-serratus_M_contig143:371077..371227Fucus serratus maleCDSF-serratus_M_contig143 371078..371227 -
1690962840.850789-CDS-F-serratus_M_contig143:371077..3712271690962840.850789-CDS-F-serratus_M_contig143:371077..371227Fucus serratus maleCDSF-serratus_M_contig143 371078..371227 -
1622929414.3205135-CDS-F-serratus_M_contig143:378531..3785671622929414.3205135-CDS-F-serratus_M_contig143:378531..378567Fucus serratus maleCDSF-serratus_M_contig143 378532..378567 -
1690962840.865317-CDS-F-serratus_M_contig143:378531..3785671690962840.865317-CDS-F-serratus_M_contig143:378531..378567Fucus serratus maleCDSF-serratus_M_contig143 378532..378567 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig143.3068.1

>prot_F-serratus_M_contig143.3068.1 ID=prot_F-serratus_M_contig143.3068.1|Name=mRNA_F-serratus_M_contig143.3068.1|organism=Fucus serratus male|type=polypeptide|length=62bp
MLYREIATLHDQVPIEGVEDLSSNFLLYRGASPQAEGVMEVLGFTAPLRM
IQERTSSPTRP*
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mRNA from alignment at F-serratus_M_contig143:370974..378567-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig143.3068.1 ID=mRNA_F-serratus_M_contig143.3068.1|Name=mRNA_F-serratus_M_contig143.3068.1|organism=Fucus serratus male|type=mRNA|length=7594bp|location=Sequence derived from alignment at F-serratus_M_contig143:370974..378567- (Fucus serratus male)
ATGCTCTACCGCGAGATCGCGACGCTCCATGACCAGGCGAGTGAGCGCCA
TGCACTGCCGCGGGCGAACATATTTTTTATTCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCTATTTACTCACAGTACTTAGTATCCTTTGAAACTAATT
TGGTCTTGATACCGTGAGGCGAGTCTTTGAAGGGGATAGGGGTTGATTGA
CAACCTCGTATTTGCTCGCCAGGCAACAAGAAACATGTTGGAAATAAAGA
AAAAATGTAAATCGATAGACATTCAAAAATGATGTCGACGGTTACAGTAT
TTGGGGCAAATACAGACTAGACTCCGTCACAGTTCCCATGGCGGGAGAAT
GTAAGTTCCCAGGCAGGGGGGGGGCTGCACCGCGTGAACATGCATGCCAT
GCGTCGCGCTCGAGCAATCGCTTCTCGTGGCACTTTCAACGCAGCCTCCG
GCGATCTCCAGAGTTGCCGAGAGAAGTCCCTTCCCTGTTGCTAGTTTCGA
ACCACAGTTATCTTTATTGTGTTGGTTATCGTAATTGTCAAAAGTCTTCG
GCGTCCAATTCTGCACTGGTTTCACCTTGGTAGGGAATCGCAGCATACGC
CCCCGCCTCCCTCCCTCCCTACCCCACACGCCCACAAGATGCGGAAGCTC
TTGGTTTCAAAAATACTTTGTCGTAACAAAACATGAAATGAGATGACGTG
ACGCAGCGGTCACAACTTGCAAGGCACGTAGTCGTGACGGTTCCGAACAG
CAGTCAGCGAGGTTTCTGTAGTCGGCACTGTGTCCCTTCGGTGACCTGTG
GCTTTTTGTGGGAAAATGGAACAACTATAACTGCCGGCAAATGCGCCAAC
TAAATACTACTACTACTACTACTACTACTACTACCTTTGTGTTCTCTTGA
GGACGTTATCTATCCTCTCTATCCTCTCTATCCTCTCCAGACAATGTATT
TGCGTTGTTTACAACTGTATTGTAATGTACTTTTTCTCGGCTCGGATAGT
AGAGCTGTGGCCTTGAAAGCTCAACTCATTGCATCCTTAAAAAGCAACAT
TTTAAAGACGAAGAGGATGAAAAACGTGTTGAAATTATGGCAAAATGTGT
AAACGACGCTGTGTTGCGATTTTTTTATTTATTAAAAAGGAAGATACAAT
TGCTGGTCGTGTTAAGCCTGGATCAAAAAGAAATATCAATTTTCGAGCGT
AGCTGCTCCCCCAAGGGGTGAGAAGATTGCTATCTCTTCAGTGGGTCATA
TCTCGATCTTGGGTTCATTTCTGTCCGATTGAGTCGATCTGATGGTAGGG
ATCACCTCGATGTTGTTGTTGTTGCTGTTGTCGATGTCTTCACACTATCA
ATAAAAAACGTTTTGACCTCTGCCCGGTACATTCTCTTCCTTGCTCTTCA
AGGCAAAGAAACGATTTTCCGTCGTCACAAGCTAACCCAAAATAAGGCGC
AGAAAAAATAAAATAAAGAAAACGAGGAATTCCCAACACTCGCGAAAAAA
TATGTAACAAGTTCCTAAAAATAATAAGTTCAGAAAAACAAATAATAGGT
TAGGACAGGAAAACTCGAAAAAGAAAGTAGAGCCCATCGCTCCAAACTAA
ATCGGAAGCTGAGTCACAAACAAAACATACTATAGGAGTACCACTACAAG
CAAAAAAAAACACTTGAAGAAGAAGTTATCGCCCCCCCCCCCCTACGAAG
CCGGGGAGTGTTCAACGTCGGGTTCCCGCCGACCAGGCCAACCCCACTCA
ACACCTCGGAGCTGTGAGAAGGGCATTTTTTTTAACCACGCTCACATCAT
GCAAGATAGTACCGTCTGTCCTAGACAGTATCTCCACGCGCCCCTACTAT
TATATTAATATTAAGCCGGGGAGCTCTTTGTCGGGTTTCTCACCAACTAG
ATGTACTAGATGTAGTATTTATTAATAGCGATTGCGAAAGACTTAAGAGG
GAAGAATTTGCACTTGCCGCGTAGCTTGGGGGAAAACGTGCGACATCGGG
ACAGGCAGACTGTATTGACGGCTCTATTGTAGTACCAGAGAAAATCGTAG
CCCTGCCAGCAGCAGTGAGCACGAATCTTTGGCGCCGTCGGCTCGGACAT
CTGAATGAAAGTGTACCACGTAACACAAAATACTTATTGACAGTGGGTAC
AGGTGTGAAATAATCCGACTCTGTAATCCTGTAATACTGTAGAAGATAAC
GAGGAAAGTACGCAAGAGTCCACATGCCAAAAGGGCGAGTCATGGTTGGG
TTATTATTGTTGAACCCCTTCGAGTAGTACTATTAATAAGTAGTAACCAT
TGGTTTTAATGGGCCGCTCTAGCCTAGAGTGTATGGTATACTCGGGATTT
TGTTGCGATATGCCTCAAGCACAAGTCTAGCCTCTCTGTATTAGGTAACC
TCCTAGAGTTTGAGAGACATTTCGCGATACCATTTGGCAGGTGAGGGGGT
CAGGGGACGGAACACACATCACACAAGAGAGTACCGTAAGTATCGGAGTC
TTGGCACACCCCCTAGACAGACTTTCCAGGCTCGATCGCCCCACAACCAA
GAGGACGCGAACACCGGCCGATACGTCTACAGAAAGCACTTGGCGAGATC
TTTCGAAAACCGCCCTTTTCGGCATCGGCATCCTCTTGGTTGTGGAGCAA
TCGAGCCTGGAAGATCAGTCTAGGGGGTGTGCCAAGACTCTTCGACCGAT
ACCTACGGTATCGTGATTTCAAAGAATGCTTCAAAAGAGCAAGATTGATT
CAGTATTTCACTGCGCCGTACACACCCCAGAAAAATCGAATATACGAAAG
AGCTCACAAAGACCGTAATGCAAATAACGAGGTGTTTTGTTATTTAGTTG
AAACAGTCCTATTACCATCTTTTCTGGGGTGAAACGGCTTTTTAATTTTA
ATATAATAGCACATCAGTCTTTCTGAAAAATCGTATTCCGCATGGCGCCC
TTGATAACGATACGCCTTACTATCGAATGCTTGGGAAAAATGCTGATGTC
TCCTTTTTTTTTTTTGCGAGCTAGATAGGATCACGAGCGTTTCAGTTGTT
CACGAGGAGAGCAGAGGCATCGTGAAATACTTGATCAGAGAGCCTGGGAA
TGTGTTTTAGCGAGGCACTAATGATAATTTATGATGGCACTAATGACAAA
CACTGAATGGCCCCACATCAGTTCGGCCAGCCGCAATGATCGAAGCTAGT
CTCAAGTACTCTCCTAAGTAGCACGCTCCTTACGTGGCGATCAGACACCG
AAACTCCCCGCGCTGTCAACGGTAAACGCAACGAAGTGCCACTCATGCGT
ACGGACTCGGGCCTTAATCTCGATGCGCCTGTAGAACGGATGTCCCTGCT
GAGCGGCCACACATCACGCCATGCTCTGTGCGTGTATGCCTGAAGTCGAC
GAACGCCAAACCTATCCACAGTCCGACGCGTCTTGATCCTGCAGATGGTG
CCTTACACCCACCTGTGCCATCCATGGAGCCTATTAAGAGACTCTTGGAG
GATGTGATTTGTGGGCCTTCCATGCTGGAAAGTGCGTTGTGTGTTGTAGG
ACCGACAGGCTATGTACTGTCGAAAAGGATGTTGCTTCAATTGAGGGTAG
GGTAATACTTGCAGGGACAGGGTCAGGCATTGTACGGTAGTGTCTTGCAG
GTAAGATTGGTGATAGGTGTTGGGCGAGCAGGAGGAGGGGCTCCTAACTT
TTTATCGTATCTATTATGACTGTGTAGTATAACTTCAAACATGTTGTACT
ACTCTTTAAATAAAACATTACAAACCCATCTGATCATTTCAGAACGTCGC
CGGTACTTTCAACATGCCCACTTCATACCAAAAGTGGGCGTGGGAAAGAG
AGGCGTATATTATTTGGTCCATGGTGGCCTGCCAAGGCAGCACTCGTTCG
GAACTACCTTGAGGTTTACTGGCCCTGTGCCGGCGTAGTCTTGGCAGTGA
ACACCATCGGTGCGCATTTGCGTGACCCGATAAACTCGGGACTGACCCGA
TGGCGTATAGCGGTTTAAAACAAATAAATGGAGCTGCGGAACTCGGGAGG
AATCCCATAAATAAGCGCCAGATTCAGCCTGAGTATGGAGATGAGCAGGC
TGACGCGGGACGGGACTGCCGAAACCGTCTCGCGAGACCAAATTCTCAGG
CGCGAACGCGGACAGGGAAATGATCATTTTCCCTGTTCAGCTAACCATGT
GCAGGATTGGCAACCTTACCCGGTTGATCCCTACTCTTGCTATATGTGCA
AGGACTATGACCATATACACATACATACTATCCGTTACATCGAAACGCTA
TAGGAAGATCAACCATCGTTGAGTTAAACTTGAATCTACTGTTCGGCTGC
GTTTCTTCTAGAACAGGTTTATAGCCATTGGTATGATATACAAACGCTGT
GGATGAGTGAAATATTCTTAGTCTATTTATAGCCCGCAAGACTCCGTAAG
CGCAAACCCTTTTTCTTTCGTTGACCATGCATTGGGAGGTGGGACGTACG
AACAACATTCCCCTGGCCTGTGCACCAAATTCCAGGCCCCACTTGGAAAA
CCTTTGACAGCGGACGCTACGATAGCTTGTACCGCGTAGTTGGTGTCCTA
ATTTGCCTTCATAAAGCGGCGAGGCATGATATTATGCTCCCTCTACGAGC
GAAAGGAGTGCTCCCGCCCTGTTAACCACGGAGCCGAGGGAGGCGTGGGA
ACTGAGATAGGTCTTCGACTTTGACTGAGGACTAGATTTCACACTGCTGC
GGTGATGTGGTTGGGTGATTCCAATGCGCTGAGCGTGAGAATCACAAGAT
AAAGATGCACATGCAATGTGTTCGTGACCATCAGGAGTGTGATGTCATGC
GCAAGGTAATCTAACCGACTTTGCGTGGCTAATATATATAAAAAGAATTT
TCACGTACGGTATCAGGTGTCGGCGGGTTTTATTTTGCTCATTTTTGCCA
GAGTTCCTGCTTTATAAAAGCGATGTCGTGCGAGCTATGAGGCCAGCGTT
GTGTACTCGTACGTTCTCAAAGTTACACCTGGTCTGGGGAAAATTTGACG
CCCGATTGCGTCGCATCTCCAAAAATGATTTGGCTCATTTGGCTCAACTA
CATTCTGTCTACCACTTTGGGCCATGTCGATTGCATGCGCACGTTTAAAC
TCCACCATCGGAGGGGTTGTTTATACACGCAGAGTACACGTAAATGCCTT
GAGGCGGTTACATATTTAATCTTGAGCTGTTTTTCTGTGCCAACCGCGGT
ACGTAATAAAAGATCATAACTATCAAATAGTATGGTACCTGGTAGGACTT
TCTCTATTGCTCACCTCGAAAAGAGCGTTCAACGCATCTGGCGACCTCGC
ATCGTGTCCGGCTTCTGTACAGTCGGCCTTTCGGGCACCTCAAGAATCGG
TGTTGCGGTCGCCTTTGTTCAACATCATTTGGTTTATGTGAAGAAATCTT
GCCCCAAAAATGAGATGCAAGGGCTCCTCGTTTTTTCCCACTTGCGGTAC
TTGGCCGAGGGCTTAGTTCCAGCATGCTGTCGCCGGTTGTACCCCTCCCG
AGGCAAAAACAAAGATACAGCACCAGTACAAAGCGTGTCAAAAGAAACGC
ACCAACGAGCGTAGATACTTAAATAGAGACTACCATGCCGGTGACTTTCG
ACCAGACAGTATAACAAGCGCAAGTCGTGACCCAGTTGTCGATCATGACA
CCATTAAGGGTAGGTGCCTGCTGCTGATACAAACCAATCTCGTCAGAGAG
ATAACCGCGCAAGCAATGTATTGGGAGCGTGCTACTGGTGCCCGGTTCTC
GTGCTGCTAGTTCCCTATACCTTTGGGGAGACTGGGAGACTGGGAGACTC
TACAGAACGGTACACCTTAGGATTGACTGAGGATTTCAACCGACACGCCC
ACGGCTGAGCGCTGTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCAAGACCTGTGACGACACCGCAACACCGTCCATGTTGTGTCCTGGAA
TCTGAAAGCTCTCGCCCTTGACGGAAATGACCCGTTTCTGTCTCCTTTTC
CCGTTCCTCACTTCTCCCCCAACTCCCCTCGGGTATACCGAGAGCACCCC
GGAAATTACCCACTTGTTAGATAGCTCTAAATGGTTTTGCGTTCATAGGT
GTGACAAGCTTGTGTCTCCCCAAATGCCCCCTCCCCACCCGCCCCAGTCG
CCTGAACGCCTCTTTTCACCCAGTCGGTGTTGCTTAAACCGTATCTCTTG
AAGGCGAGAGTGCGGTGGCATCGAAACTCTCGACTTTGCACCCTGACGAT
GCTCAAAAGGGAATTGACGAAGCGCGACGCTAGAGCATCGTAGTACACAC
CAGGCGTAAAAACGTCAAGGCTTCCTATTTGCTTTGGAGGGCTTCGATTC
CTACACGCCTCTTAATCCCCAGGCCTTGAGCTTCAGCGGGAAGATCGACC
GGCTCGGCAACAGCCAGGAAAATTGTGTTTGGCTAGGCCTGGTACTCTAG
CGACGGTTCCATCGACCGACTCGTGAAAGACGCCTGGCTTGCGGCTCCAA
TCTCCTGAATGTTGTTGGGAGGATGGAGCAAACGGCGCCTAGTTCACACA
AGACCCCCCCCCCCCATCACTGCGCCCGCGGCTGTGAAACGAAGCCACGT
GGGGTTGCCTGTTGTGTTACGGCCGGGTCGGGCGATGTTGGAACGAGGCC
GATATGCTTCTACTGAGCTCGTTCGCCGCCCCGCGAGGTAGCGGCCCAGG
CGGTGATGCCGCCCGGAGTTTTTTTTTTTTTCCGGCCGGGGGGGGGGGGG
GGGGGGGGGGGGGGTCCTGCATTACCCTTTCTCTCGTGCACCCTTTAAAA
CGAAGGTGTCGTTCGTTTTCGTCGCTGTCTCATGGATCGTAACGATGTCG
ATTATTCCGGTGCAGTACTGGTACCTCTTGACAGCGCAATGTGTCGTTGT
ATCGCTTTTGCTGTTTTGTTTTGTTTTTTGCAGCTTTGGCAAGAAGAGCC
ACAGTATGCTTCTTCTCTCGATACAGTTTCGTGCAGAGCTACGGGGACAG
GGAAAAATGAATTTCATTTTTTCTTGTTCAGCTGACGGCAAGCAGAATTG
GCGACCCCACCCGTTTGGTGCGCCCAAGCTGTTGAGCATGATGACCGCAA
CACACACACACACACACCCGGAGCAAGCACAAAAAGCTTCAAATGATTAT
CGTAGCACAACAGGGTTGTGGATTGCGCGTGTATGAGCTATTGTATAATA
TAGTTAATACATAACACATTCGAACTGTTTTGTCAAAAGTCTAAGCGTTG
TCCCTTTTCTTCTGTCTCTGTATTTTCTCTCTTTGAGCAGGTTCCAATCG
AGGGTGTGGAAGACCTTAGCTCGAACTTTCTCCTGTACAGAGGAGCTTCT
CCTCAGGCGGAGGGGGTAATGGAAGTCCTTGGGTTTACCGCGCCGCTTCG
GATGATACAGGAACGGACCTCCTCACCAACAAGGCCGTAACCCAGGGCGT
GTCAACCACACGTAGATAAAGTCCTCTTAGCGTTTCTCAATTCGAGGAAG
TAGTCTTTTAAGCGCGCGTCCCCCTTTTTTTTGCCATTTCGTTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig143:370974..378567-

>mRNA_F-serratus_M_contig143.3068.1 ID=mRNA_F-serratus_M_contig143.3068.1|Name=mRNA_F-serratus_M_contig143.3068.1|organism=Fucus serratus male|type=CDS|length=372bp|location=Sequence derived from alignment at F-serratus_M_contig143:370974..378567- (Fucus serratus male)
ATGCTCTACCGCGAGATCGCGACGCTCCATGACCAGATGCTCTACCGCGA
GATCGCGACGCTCCATGACCAGGTTCCAATCGAGGGTGTGGAAGACCTTA
GCTCGAACTTTCTCCTGTACAGAGGAGCTTCTCCTCAGGCGGAGGGGGTA
ATGGAAGTCCTTGGGTTTACCGCGCCGCTTCGGATGATACAGGAACGGAC
CTCCTCACCAACAAGGCCGTAAGTTCCAATCGAGGGTGTGGAAGACCTTA
GCTCGAACTTTCTCCTGTACAGAGGAGCTTCTCCTCAGGCGGAGGGGGTA
ATGGAAGTCCTTGGGTTTACCGCGCCGCTTCGGATGATACAGGAACGGAC
CTCCTCACCAACAAGGCCGTAA
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