mRNA_F-serratus_M_contig143.3060.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig143.3060.1
Unique NamemRNA_F-serratus_M_contig143.3060.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig143.3060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig143contigF-serratus_M_contig143:14165..14805 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size643
Cds size639
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929412.2640314-CDS-F-serratus_M_contig143:14164..148031622929412.2640314-CDS-F-serratus_M_contig143:14164..14803Fucus serratus maleCDSF-serratus_M_contig143 14165..14803 +
1690962839.9714005-CDS-F-serratus_M_contig143:14164..148031690962839.9714005-CDS-F-serratus_M_contig143:14164..14803Fucus serratus maleCDSF-serratus_M_contig143 14165..14803 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig143.3060.1prot_F-serratus_M_contig143.3060.1Fucus serratus malepolypeptideF-serratus_M_contig143 14165..14803 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig143.3060.1

>prot_F-serratus_M_contig143.3060.1 ID=prot_F-serratus_M_contig143.3060.1|Name=mRNA_F-serratus_M_contig143.3060.1|organism=Fucus serratus male|type=polypeptide|length=213bp
SSEFGVGSTFTAAIPVKGEEDVSEAQKGREAAAVEQSQRSKIFSFGRKRS
LKRDEDDSSSDASVTGRAKSTQKIADGIDSPTRKNDYPLPLPSRRPSVFR
LAALRIARRLGKQSSRAQPETTIWENSASLPIEKQRQSPLQAKVKQLLTL
PNDRREVVGGERLRKGEGNHESDRSEVKYSGERDDATHETALHGTPGDSD
KKGVGVKETPAPV
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mRNA from alignment at F-serratus_M_contig143:14165..14805+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig143.3060.1 ID=mRNA_F-serratus_M_contig143.3060.1|Name=mRNA_F-serratus_M_contig143.3060.1|organism=Fucus serratus male|type=mRNA|length=641bp|location=Sequence derived from alignment at F-serratus_M_contig143:14165..14805+ (Fucus serratus male)
TCTTCTGAGTTCGGCGTCGGGTCGACGTTTACCGCGGCAATCCCGGTCAA
GGGGGAGGAGGACGTCTCCGAAGCACAAAAAGGCCGCGAGGCGGCGGCGG
TGGAACAGAGTCAAAGAAGTAAAATATTTTCCTTTGGGAGGAAGCGAAGC
CTCAAACGGGACGAAGACGATAGCAGTTCCGACGCCTCCGTAACGGGAAG
GGCCAAGTCTACTCAGAAAATTGCTGACGGGATTGACTCCCCCACGCGAA
AAAACGATTACCCTCTCCCCCTTCCCTCGAGACGCCCGTCCGTCTTCCGG
TTGGCGGCTCTACGTATTGCGCGAAGACTAGGTAAGCAGTCCTCGAGGGC
TCAGCCGGAGACGACGATCTGGGAAAATTCTGCGTCGCTCCCCATCGAGA
AACAACGACAAAGTCCACTACAGGCGAAGGTCAAACAACTGCTGACCCTT
CCAAACGACCGGCGAGAGGTGGTCGGTGGTGAAAGGTTGAGAAAAGGCGA
GGGAAACCACGAGAGCGACAGAAGCGAGGTAAAATACAGTGGTGAGCGAG
ATGATGCTACGCACGAGACGGCATTGCACGGCACACCGGGAGATAGTGAT
AAGAAGGGTGTGGGAGTCAAAGAAACACCTGCGCCGGTGTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig143:14165..14805+

>mRNA_F-serratus_M_contig143.3060.1 ID=mRNA_F-serratus_M_contig143.3060.1|Name=mRNA_F-serratus_M_contig143.3060.1|organism=Fucus serratus male|type=CDS|length=1278bp|location=Sequence derived from alignment at F-serratus_M_contig143:14165..14805+ (Fucus serratus male)
TCTTCTGAGTTCGGCGTCGGGTCGACGTTTACCGCGGCAATCCCGGTCAA
GGGGGAGGAGGACGTCTCCGAAGCACAAAAAGGCCGCGAGGCGGCGGCGG
TGGAACAGAGTCAAAGAAGTAAAATATTTTCCTTTGGGAGGAAGCGAAGC
CTCAAACGGGACGAAGACGATAGCAGTTCCGACGCCTCCGTAACGGGAAG
GGCCAAGTCTACTCAGAAAATTGCTGACGGGATTGACTCCCCCACGCGAA
AAAACGATTACCCTCTCCCCCTTCCCTCGAGACGCCCGTCCGTCTTCCGG
TTGGCGGCTCTACGTATTGCGCGAAGACTAGGTAAGCAGTCCTCGAGGGC
TCAGCCGGAGACGACGATCTGGGAAAATTCTGCGTCGCTCCCCATCGAGA
AACAACGACAAAGTCCACTACAGGCGAAGGTCAAACAACTGCTGACCCTT
CCAAACGACCGGCGAGAGGTGGTCGGTGGTGAAAGGTTGAGAAAAGGCGA
GGGAAACCACGAGAGCGACAGAAGCGAGGTAAAATACAGTGGTGAGCGAG
ATGATGCTACGCACGAGACGGCATTGCACGGCACACCGGGAGATAGTGAT
AAGAAGGGTGTGGGAGTCAAAGAAACACCTGCGCCGGTGTCTTCTGAGTT
CGGCGTCGGGTCGACGTTTACCGCGGCAATCCCGGTCAAGGGGGAGGAGG
ACGTCTCCGAAGCACAAAAAGGCCGCGAGGCGGCGGCGGTGGAACAGAGT
CAAAGAAGTAAAATATTTTCCTTTGGGAGGAAGCGAAGCCTCAAACGGGA
CGAAGACGATAGCAGTTCCGACGCCTCCGTAACGGGAAGGGCCAAGTCTA
CTCAGAAAATTGCTGACGGGATTGACTCCCCCACGCGAAAAAACGATTAC
CCTCTCCCCCTTCCCTCGAGACGCCCGTCCGTCTTCCGGTTGGCGGCTCT
ACGTATTGCGCGAAGACTAGGTAAGCAGTCCTCGAGGGCTCAGCCGGAGA
CGACGATCTGGGAAAATTCTGCGTCGCTCCCCATCGAGAAACAACGACAA
AGTCCACTACAGGCGAAGGTCAAACAACTGCTGACCCTTCCAAACGACCG
GCGAGAGGTGGTCGGTGGTGAAAGGTTGAGAAAAGGCGAGGGAAACCACG
AGAGCGACAGAAGCGAGGTAAAATACAGTGGTGAGCGAGATGATGCTACG
CACGAGACGGCATTGCACGGCACACCGGGAGATAGTGATAAGAAGGGTGT
GGGAGTCAAAGAAACACCTGCGCCGGTG
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