mRNA_F-serratus_M_contig143.3083.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig143.3083.1
Unique NamemRNA_F-serratus_M_contig143.3083.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig143.3083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig143contigF-serratus_M_contig143:694496..697276 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size566
Cds size369
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig143.3083.1prot_F-serratus_M_contig143.3083.1Fucus serratus malepolypeptideF-serratus_M_contig143 694633..695780 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929412.1293714-UTR-F-serratus_M_contig143:694495..6946321622929412.1293714-UTR-F-serratus_M_contig143:694495..694632Fucus serratus maleUTRF-serratus_M_contig143 694496..694632 -
1690962839.8763049-UTR-F-serratus_M_contig143:694495..6946321690962839.8763049-UTR-F-serratus_M_contig143:694495..694632Fucus serratus maleUTRF-serratus_M_contig143 694496..694632 -
1622929412.1624427-UTR-F-serratus_M_contig143:695780..6957861622929412.1624427-UTR-F-serratus_M_contig143:695780..695786Fucus serratus maleUTRF-serratus_M_contig143 695781..695786 -
1690962839.9117918-UTR-F-serratus_M_contig143:695780..6957861690962839.9117918-UTR-F-serratus_M_contig143:695780..695786Fucus serratus maleUTRF-serratus_M_contig143 695781..695786 -
1622929412.1765761-UTR-F-serratus_M_contig143:697222..6972761622929412.1765761-UTR-F-serratus_M_contig143:697222..697276Fucus serratus maleUTRF-serratus_M_contig143 697223..697276 -
1690962839.92804-UTR-F-serratus_M_contig143:697222..6972761690962839.92804-UTR-F-serratus_M_contig143:697222..697276Fucus serratus maleUTRF-serratus_M_contig143 697223..697276 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929412.1427603-CDS-F-serratus_M_contig143:694632..6948521622929412.1427603-CDS-F-serratus_M_contig143:694632..694852Fucus serratus maleCDSF-serratus_M_contig143 694633..694852 -
1690962839.8912146-CDS-F-serratus_M_contig143:694632..6948521690962839.8912146-CDS-F-serratus_M_contig143:694632..694852Fucus serratus maleCDSF-serratus_M_contig143 694633..694852 -
1622929412.152665-CDS-F-serratus_M_contig143:695631..6957801622929412.152665-CDS-F-serratus_M_contig143:695631..695780Fucus serratus maleCDSF-serratus_M_contig143 695632..695780 -
1690962839.9015577-CDS-F-serratus_M_contig143:695631..6957801690962839.9015577-CDS-F-serratus_M_contig143:695631..695780Fucus serratus maleCDSF-serratus_M_contig143 695632..695780 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig143.3083.1

>prot_F-serratus_M_contig143.3083.1 ID=prot_F-serratus_M_contig143.3083.1|Name=mRNA_F-serratus_M_contig143.3083.1|organism=Fucus serratus male|type=polypeptide|length=123bp
MVNILTTNYRASREIHRPSSTSENDRWENGSISHTEDAASAAAPPPDLPC
SIAQDSPLPLPLASTVTPSKIVDASPTPAAPGSGTDDDKVGRVNVGGGDS
GTSAGGPLEKGAVSPLPGVSSG*
back to top

mRNA from alignment at F-serratus_M_contig143:694496..697276-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig143.3083.1 ID=mRNA_F-serratus_M_contig143.3083.1|Name=mRNA_F-serratus_M_contig143.3083.1|organism=Fucus serratus male|type=mRNA|length=2781bp|location=Sequence derived from alignment at F-serratus_M_contig143:694496..697276- (Fucus serratus male)
CGACCTACTGCGACGCACACAAAGAGGTACTTCGTAATATTTAAGGTACA
GAAGGTACAGAAGGTATTAATTGGAGTGCCTTAAAACTTGTGAATCGAGG
TGAAATTGACGGCAGTCGCGAAGGTATGGTGATGCGCCTGGTCCCGAGCA
AAGTGGTCCATAGTTAGGCTTTAGGGGAGGGGGGGGCGCGAACAAACACG
TACCAGTACAGTAGACTTTGTCTCTTTAATATCACTTAATTATAAGAAGA
CAAGAGCGTCCTCGTAAATACGTTCACAAACGCCGGTACTTTCAACATGC
CCACTTCATACCAACAGTGAGTGTGGGAGAGAGCGGCGCATATTAATTGG
TCCATGGTGACCTGCCAAGGCAGCACCCGGTTGGGACTACCTTGAGGTTT
ACTGGCTCTGTGCCGGCGGACTCTCGGCAGTGAACGCCATCCGTACGCAA
TTGCGTGACCCGATAAACTCGGGACTGACACGATGGCGTATGTCGGTTTA
AATAAATGAATGGACGCCGCCGCCGCCGCGGAAATCGGGAGGAATCCCGT
AAGCACCAGATTTAGCCCGAGTGTGGAGATGAGCAGGCTGACGCGGGACG
GGACTGCCGAACCCGGCAAGCCAGACCAGATTCTCAGGCGCGGACGGGGA
CATAAAGATATTAATTTTCCCTGTTCAGCTGACCACGAGCAGGATTGGCA
ACCTTACCGGTTGATCCTTGCTCATGCTATATGTAATGACTATACATACA
TACATATTTCCTTCCGGATCATTTCCGCTTTCTCTTTTTATGGAGAGTAC
GTCGTACATTCTTTCCTTCCGAATGGTGTTTTCTACCTTGTGACCACGGG
CTGTTTTTTTTACATCAGCTTATGTGAAAATTCAATAAAAAAAATCAAAA
TACATAGATACATACTTACATACATACCATCCGGCGATGGCTATGAGGAA
TAACATTACTGTTTCTCGGATGTAGCTGTAGAAAGACAGCAAGATCAGCA
TTGTAACGTCTAGTTGTAAGTCTCAAGCGCAGGAAACAAACGGCATAGCT
CTATGCTCCTCTGTGCCGCACTGATCTGCGACATGACCGAAGGGTCGTCT
TACTCCGTGTGGCACAGACGGGACTCCGGAGCTGTCGTTCTGGACGACCG
GAGTAACGCCTGTTCCCTCGGGGAGCGCCCGGCACCTTGCTCAGCATTTA
TGTAACCTACAAAATAACGCCTGCTTGGCGCGTGACGCGACTACCATCAT
TCGCGTGATGTCGATCCAATTCGAAACGCCTCCCCAGGGTTTCCATTTTC
CCTTCTTTGATTCCAAGCACTTCCCTCGAGATCACAGTACGACACCAAGA
TATATACGACATGCTTGGTTTTCGTGATGACATTATAGGCCCTCTGTTGG
TCGTAATACGCGATTTCTGTATTTTTATGTTTCTACTTTCTCTTTCCCGT
ACGCCCAACGTCACTCTCACTTTTTTTTTTTCAAACAAAGCCGAGGATGG
TGAACATTCTTACGACGAACTACCGCGCCTCCCGCGAGATTCACCGCCCT
TCGTCGACCAGTGAGAACGATAGATGGGAGAATGGAAGCATATCCCACAC
CGAAGACGCGGCATCAGCAGCAGCACCACCACCAGACCTTCCGTGGTGAG
TTTGGCGCGAGTGATGTGTGGGAAGGGGGGGGATCAACCTACCGGGGACG
GATTTGGCCAACCGCCTGATGGGTTGATTGAATTGTGGGTTTGACGCACA
ATACCGGCGTATGAAGTTAGGGAATGGGTGGCACTGAGACACCGCCACTT
CTGCTGATAGAGGGGAGGGACAGATTTGACATCCCTCCCCCTTCTCCCTT
CGTACTATAAGTTGTTGGATCGCTTGTTAGATTACTCGCCCGCGGGTTAA
AAAAGACAAAACTGACGATATGTGGGATTTGAAGGAAATATGTTGCGTTT
TGGTGGGGAGAGGGATATTCAGTTTGTACTGTAGTTTGTGTTTTGTATGC
TCGAAATTGCCCGCGTCTCGCGGTCGCCGTTGTTCTTTGGGCCCAGCGAT
TGACGTTTTTTTGACCCGTGTACGACTACCCTTCAGGGGGGTCAGAGGTT
CCCGTAACAAGTATCATTGGTCCCCGCTTGGGAAGACCACTATGGGTAGA
CTAGGATGACAGGTGCCGTAGTGCGTGGTTTTGTGTAATTTAATTAATAT
GTGCTTGTACACACGCACACGCACTTGCAATCAAACTTTCGGTGGTGATA
GCGTTTTTGTGGGTTTTTTCACCCTAAGTTTTGTCACCAAAACGTTTGGC
TACTGAACTAAGTCTCATCATCTTGCCTACACGTTAGGCACTCCGTGAAT
CACAAAAAGCCCCCTCTGGACGACCTAACGCCGCAGCCCCTCTGGGTGTA
CGATCCGCACGTTTTCCACGACAGCTCCATCGCCCAGGACTCCCCTCTTC
CTCTTCCCTTAGCGTCAACGGTCACACCATCGAAGATCGTGGATGCTTCC
CCCACGCCAGCCGCCCCTGGATCTGGGACCGATGACGACAAGGTCGGCAG
GGTTAATGTTGGCGGTGGTGATTCGGGGACGAGTGCTGGCGGTCCCCTGG
AGAAGGGAGCGGTCAGCCCTTTACCGGGGGTTTCCAGCGGTTGAAGCTAC
AACTTCAACCTGCACTGCTACTGACCATACTGTACACATGGATATGTTCA
AGGAAAAAGGTGATATGACAAATTAGGCATGTGGACGTTATTGTGTGCTT
GACTGGACTACCCTTGGGGGACTCTCTGAGA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig143:694496..697276-

>mRNA_F-serratus_M_contig143.3083.1 ID=mRNA_F-serratus_M_contig143.3083.1|Name=mRNA_F-serratus_M_contig143.3083.1|organism=Fucus serratus male|type=CDS|length=738bp|location=Sequence derived from alignment at F-serratus_M_contig143:694496..697276- (Fucus serratus male)
ATGGTGAACATTCTTACGACGAACTACCGCGCCTCCCGCGAGATTCACCG
CCCTTCGTCGACCAGTGAGAACGATAGATGGGAGAATGGAAGCATATCCC
ACACCGAAGACGCGGCATCAGCAGCAGCACCACCACCAGACCTTCCGTGA
TGGTGAACATTCTTACGACGAACTACCGCGCCTCCCGCGAGATTCACCGC
CCTTCGTCGACCAGTGAGAACGATAGATGGGAGAATGGAAGCATATCCCA
CACCGAAGACGCGGCATCAGCAGCAGCACCACCACCAGACCTTCCGTGCT
CCATCGCCCAGGACTCCCCTCTTCCTCTTCCCTTAGCGTCAACGGTCACA
CCATCGAAGATCGTGGATGCTTCCCCCACGCCAGCCGCCCCTGGATCTGG
GACCGATGACGACAAGGTCGGCAGGGTTAATGTTGGCGGTGGTGATTCGG
GGACGAGTGCTGGCGGTCCCCTGGAGAAGGGAGCGGTCAGCCCTTTACCG
GGGGTTTCCAGCGGTTGACTCCATCGCCCAGGACTCCCCTCTTCCTCTTC
CCTTAGCGTCAACGGTCACACCATCGAAGATCGTGGATGCTTCCCCCACG
CCAGCCGCCCCTGGATCTGGGACCGATGACGACAAGGTCGGCAGGGTTAA
TGTTGGCGGTGGTGATTCGGGGACGAGTGCTGGCGGTCCCCTGGAGAAGG
GAGCGGTCAGCCCTTTACCGGGGGTTTCCAGCGGTTGA
back to top