mRNA_F-serratus_M_contig143.3062.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig143.3062.1
Unique NamemRNA_F-serratus_M_contig143.3062.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig143.3062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig143contigF-serratus_M_contig143:173159..173453 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size286
Cds size273
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig143.3062.1prot_F-serratus_M_contig143.3062.1Fucus serratus malepolypeptideF-serratus_M_contig143 173170..173453 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929412.0711555-UTR-F-serratus_M_contig143:173158..1731691622929412.0711555-UTR-F-serratus_M_contig143:173158..173169Fucus serratus maleUTRF-serratus_M_contig143 173159..173169 +
1690962839.8448436-UTR-F-serratus_M_contig143:173158..1731691690962839.8448436-UTR-F-serratus_M_contig143:173158..173169Fucus serratus maleUTRF-serratus_M_contig143 173159..173169 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929412.0885515-CDS-F-serratus_M_contig143:173169..1732691622929412.0885515-CDS-F-serratus_M_contig143:173169..173269Fucus serratus maleCDSF-serratus_M_contig143 173170..173269 +
1690962839.853696-CDS-F-serratus_M_contig143:173169..1732691690962839.853696-CDS-F-serratus_M_contig143:173169..173269Fucus serratus maleCDSF-serratus_M_contig143 173170..173269 +
1622929412.0993552-CDS-F-serratus_M_contig143:173280..1734531622929412.0993552-CDS-F-serratus_M_contig143:173280..173453Fucus serratus maleCDSF-serratus_M_contig143 173281..173453 +
1690962839.861589-CDS-F-serratus_M_contig143:173280..1734531690962839.861589-CDS-F-serratus_M_contig143:173280..173453Fucus serratus maleCDSF-serratus_M_contig143 173281..173453 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig143.3062.1

>prot_F-serratus_M_contig143.3062.1 ID=prot_F-serratus_M_contig143.3062.1|Name=mRNA_F-serratus_M_contig143.3062.1|organism=Fucus serratus male|type=polypeptide|length=91bp
MFKENLTLIPALQYTESNRCKNKIDGTKPNQTKPERGRRKITKESRQKKK
TDEKVASKGHRRQAGTQKRQTPHDVCPRCKIALPGACSPSY
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mRNA from alignment at F-serratus_M_contig143:173159..173453+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig143.3062.1 ID=mRNA_F-serratus_M_contig143.3062.1|Name=mRNA_F-serratus_M_contig143.3062.1|organism=Fucus serratus male|type=mRNA|length=295bp|location=Sequence derived from alignment at F-serratus_M_contig143:173159..173453+ (Fucus serratus male)
CGGGCGGTTGCATGTTTAAAGAAAATCTCACATTGATCCCCGCGCTACAA
TATACGGAATCAAACCGTTGCAAAAACAAAATAGACGGAACCAAACCGAA
TCAAACCAAACCGAAAAATAGACGGAACGCGGCCGGAGAAAAATTACTAA
GGAAAGCAGACAGAAGAAGAAAACGGACGAAAAAGTCGCCAGCAAAGGAC
ATCGTCGCCAGGCAGGGACACAGAAGAGACAAACACCACATGATGTGTGC
CCGCGGTGTAAGATCGCCTTACCGGGGGCATGCAGCCCATCTTAT
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Coding sequence (CDS) from alignment at F-serratus_M_contig143:173159..173453+

>mRNA_F-serratus_M_contig143.3062.1 ID=mRNA_F-serratus_M_contig143.3062.1|Name=mRNA_F-serratus_M_contig143.3062.1|organism=Fucus serratus male|type=CDS|length=546bp|location=Sequence derived from alignment at F-serratus_M_contig143:173159..173453+ (Fucus serratus male)
ATGTTTAAAGAAAATCTCACATTGATCCCCGCGCTACAATATACGGAATC
AAACCGTTGCAAAAACAAAATAGACGGAACCAAACCGAATCAAACCAAAC
ATGTTTAAAGAAAATCTCACATTGATCCCCGCGCTACAATATACGGAATC
AAACCGTTGCAAAAACAAAATAGACGGAACCAAACCGAATCAAACCAAAC
CGGAACGCGGCCGGAGAAAAATTACTAAGGAAAGCAGACAGAAGAAGAAA
ACGGACGAAAAAGTCGCCAGCAAAGGACATCGTCGCCAGGCAGGGACACA
GAAGAGACAAACACCACATGATGTGTGCCCGCGGTGTAAGATCGCCTTAC
CGGGGGCATGCAGCCCATCTTATCGGAACGCGGCCGGAGAAAAATTACTA
AGGAAAGCAGACAGAAGAAGAAAACGGACGAAAAAGTCGCCAGCAAAGGA
CATCGTCGCCAGGCAGGGACACAGAAGAGACAAACACCACATGATGTGTG
CCCGCGGTGTAAGATCGCCTTACCGGGGGCATGCAGCCCATCTTAT
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