mRNA_F-serratus_M_contig1427.3052.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig1427.3052.1
Unique Name	mRNA_F-serratus_M_contig1427.3052.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

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BLAST of mRNA_F-serratus_M_contig1427.3052.1 vs. uniprot
Match: A0A6H5JT61_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT61_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 7.660e-17
Identity = 42/74 (56.76%), Postives = 54/74 (72.97%), Query Frame = 1

Query:    1 CSVTKSKQQAHPKKSTRKTTRPMQLVYTDLMGPFTPAAKGG--YRLKFTDDYLRMKDIFLLKNKTEAAESLHQY 216
            C+++KS Q AHPKK++R+TT PM LVYTD+MG  TP AKGG  Y   F D Y R+K+I+LLK K+E   +LH Y
Sbjct:  144 CAISKSTQLAHPKKTSRETTAPMLLVYTDIMGKTTPLAKGGFGYVSMFNDAYSRIKEIYLLKAKSETVRALHAY 217

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BLAST of mRNA_F-serratus_M_contig1427.3052.1 vs. uniprot
Match: A0A6H5JYD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD3_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.050e-16
Identity = 43/74 (58.11%), Postives = 54/74 (72.97%), Query Frame = 1

Query:    1 CSVTKSKQQAHPKKSTRKTTRPMQLVYTDLMGPFTPAAKGG--YRLKFTDDYLRMKDIFLLKNKTEAAESLHQY 216
            C+++KS+Q AHP+K+ R+TT PMQLVYTD MG  TP AKGG  Y  KFTD Y  MK+I+LLK  +E   +LH Y
Sbjct:  346 CAISKSRQLAHPEKTNRETTAPMQLVYTDNMGKTTPLAKGGFGYVSKFTDAYSWMKEIYLLKAISETVRALHAY 419

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BLAST of mRNA_F-serratus_M_contig1427.3052.1 vs. uniprot
Match: A0A6H5KZ34_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ34_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 8.530e-15
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = 1

Query:    1 CSVTKSKQQAHPKKSTRKTTRPMQLVYTDLMGPFTPAAK--GG---YRLKFTDDYLRMKDIFLLKNKTEAAESLHQY 216
            C + K KQ  HPK+STR+ +RP QLV  D MGP  P AK  GG   Y  K TDDY +MK+++LL+ K++  E++H Y
Sbjct:   80 CQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTY 156

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BLAST of mRNA_F-serratus_M_contig1427.3052.1 vs. uniprot
Match: A0A6H5KHY1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHY1_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.020e-14
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = 1

Query:    1 CSVTKSKQQAHPKKSTRKTTRPMQLVYTDLMGPFTPAAK--GG---YRLKFTDDYLRMKDIFLLKNKTEAAESLHQY 216
            C + K KQ  HPK+STR+ +RP QLV  D MGP  P AK  GG   Y  K TDDY +MK+++LL+ K++  E++H Y
Sbjct:   28 CQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKNKGGFFPYECKITDDYTKMKEVYLLRKKSDTTEAVHTY 104

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BLAST of mRNA_F-serratus_M_contig1427.3052.1 vs. uniprot
Match: A0A6H5KCM0_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM0_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 3.860e-14
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = 1

Query:    1 CSVTKSKQQAHPKKSTRKTTRPMQLVYTDLMGPFTPAAK--GG---YRLKFTDDYLRMKDIFLLKNKTEAAESLHQY 216
            C + K KQ  HPK+STR+ +RP QLV  D MGP  P AK  GG   Y  K TDDY +MK+++LL+ K++  E++H Y
Sbjct:   80 CQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTY 156

[Close]

BLAST of mRNA_F-serratus_M_contig1427.3052.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 3.900e-14
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = 1

Query:    1 CSVTKSKQQAHPKKSTRKTTRPMQLVYTDLMGPFTPAAK--GG---YRLKFTDDYLRMKDIFLLKNKTEAAESLHQY 216
            C + K KQ  HPK+STR+ +RP QLV  D MGP  P AK  GG   Y  K TDDY +MK+++LL+ K++  E++H Y
Sbjct:  456 CQIAKHKQSPHPKQSTREISRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTY 532

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BLAST of mRNA_F-serratus_M_contig1427.3052.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 3.910e-14
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = 1

Query:    1 CSVTKSKQQAHPKKSTRKTTRPMQLVYTDLMGPFTPAAK--GG---YRLKFTDDYLRMKDIFLLKNKTEAAESLHQY 216
            C + K KQ  HPK+STR+ +RP QLV  D MGP  P AK  GG   Y  K TDDY +MK+++LL+ K++  E++H Y
Sbjct:   80 CQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTY 156

[Close]

BLAST of mRNA_F-serratus_M_contig1427.3052.1 vs. uniprot
Match: A0A6H5K1R7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R7_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 3.920e-14
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = 1

Query:    1 CSVTKSKQQAHPKKSTRKTTRPMQLVYTDLMGPFTPAAK--GG---YRLKFTDDYLRMKDIFLLKNKTEAAESLHQY 216
            C + K KQ  HPK+STR+ +RP QLV  D MGP  P AK  GG   Y  K TDDY +MK+++LL+ K++  E++H Y
Sbjct:   80 CQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTY 156

[Close]

BLAST of mRNA_F-serratus_M_contig1427.3052.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 3.940e-14
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = 1

Query:    1 CSVTKSKQQAHPKKSTRKTTRPMQLVYTDLMGPFTPAAK--GG---YRLKFTDDYLRMKDIFLLKNKTEAAESLHQY 216
            C + K KQ  HPK+STR+ +RP QLV  D MGP  P AK  GG   Y  K TDDY +MK+++LL+ K++  E++H Y
Sbjct:   80 CQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTY 156

[Close]

BLAST of mRNA_F-serratus_M_contig1427.3052.1 vs. uniprot
Match: A0A6H5J8P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8P7_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 3.940e-14
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = 1

Query:    1 CSVTKSKQQAHPKKSTRKTTRPMQLVYTDLMGPFTPAAK--GG---YRLKFTDDYLRMKDIFLLKNKTEAAESLHQY 216
            C + K KQ  HPK+STR+ +RP QLV  D MGP  P AK  GG   Y  K TDDY +MK+++LL+ K++  E++H Y
Sbjct:  421 CQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTY 497

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig1427.3052.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig1427.3052.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JT61_9PHAE	7.660e-17	56.76	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JYD3_9PHAE	1.050e-16	58.11	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KZ34_9PHAE	8.530e-15	49.35	Integrase catalytic domain-containing protein n=2 ...	[more]
A0A6H5KHY1_9PHAE	1.020e-14	49.35	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KCM0_9PHAE	3.860e-14	49.35	Integrase catalytic domain-containing protein n=5 ...	[more]
A0A6H5KT84_9PHAE	3.900e-14	49.35	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K500_9PHAE	3.910e-14	49.35	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5K1R7_9PHAE	3.920e-14	49.35	Integrase catalytic domain-containing protein (Fra...	[more]
A0A6H5JJR8_9PHAE	3.940e-14	49.35	Integrase catalytic domain-containing protein n=11...	[more]
A0A6H5J8P7_9PHAE	3.940e-14	49.35	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig1427	contig	F-serratus_M_contig1427:963..1178 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	216
Cds size	216
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929410.8898516-CDS-F-serratus_M_contig1427:962..1178	1622929410.8898516-CDS-F-serratus_M_contig1427:962..1178	Fucus serratus male	CDS	F-serratus_M_contig1427 963..1178 +
1690962839.2034156-CDS-F-serratus_M_contig1427:962..1178	1690962839.2034156-CDS-F-serratus_M_contig1427:962..1178	Fucus serratus male	CDS	F-serratus_M_contig1427 963..1178 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig1427.3052.1	prot_F-serratus_M_contig1427.3052.1	Fucus serratus male	polypeptide	F-serratus_M_contig1427 963..1178 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig1427:963..1178+
coding sequence from alignment at F-serratus_M_contig1427:963..1178+

protein sequence of mRNA_F-serratus_M_contig1427.3052.1

>prot_F-serratus_M_contig1427.3052.1 ID=prot_F-serratus_M_contig1427.3052.1|Name=mRNA_F-serratus_M_contig1427.3052.1|organism=Fucus serratus male|type=polypeptide|length=72bp
CSVTKSKQQAHPKKSTRKTTRPMQLVYTDLMGPFTPAAKGGYRLKFTDDY
LRMKDIFLLKNKTEAAESLHQY

mRNA from alignment at F-serratus_M_contig1427:963..1178+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig1427.3052.1 ID=mRNA_F-serratus_M_contig1427.3052.1|Name=mRNA_F-serratus_M_contig1427.3052.1|organism=Fucus serratus male|type=mRNA|length=216bp|location=Sequence derived from alignment at F-serratus_M_contig1427:963..1178+ (Fucus serratus male)
TGCTCCGTGACCAAAAGCAAGCAACAAGCGCACCCAAAGAAAAGCACGCG
AAAGACAACCAGACCTATGCAACTCGTCTACACGGACCTCATGGGACCAT
TCACACCGGCAGCGAAAGGAGGATACCGGCTCAAGTTCACAGATGACTAT
TTGCGCATGAAGGATATCTTCTTGCTCAAGAACAAGACCGAGGCCGCCGA
ATCGCTACACCAGTAC

Coding sequence (CDS) from alignment at F-serratus_M_contig1427:963..1178+

>mRNA_F-serratus_M_contig1427.3052.1 ID=mRNA_F-serratus_M_contig1427.3052.1|Name=mRNA_F-serratus_M_contig1427.3052.1|organism=Fucus serratus male|type=CDS|length=432bp|location=Sequence derived from alignment at F-serratus_M_contig1427:963..1178+ (Fucus serratus male)
TGCTCCGTGACCAAAAGCAAGCAACAAGCGCACCCAAAGAAAAGCACGCG
AAAGACAACCAGACCTATGCAACTCGTCTACACGGACCTCATGGGACCAT
TCACACCGGCAGCGAAAGGAGGATACCGGCTCAAGTTCACAGATGACTAT
TTGCGCATGAAGGATATCTTCTTGCTCAAGAACAAGACCGAGGCCGCCGA
ATCGCTACACCAGTACTGCTCCGTGACCAAAAGCAAGCAACAAGCGCACC
CAAAGAAAAGCACGCGAAAGACAACCAGACCTATGCAACTCGTCTACACG
GACCTCATGGGACCATTCACACCGGCAGCGAAAGGAGGATACCGGCTCAA
GTTCACAGATGACTATTTGCGCATGAAGGATATCTTCTTGCTCAAGAACA
AGACCGAGGCCGCCGAATCGCTACACCAGTAC