mRNA_F-serratus_M_contig1425.3043.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1425.3043.1 vs. uniprot
Match: D7FVA4_ECTSI (Probable extracellular nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVA4_ECTSI) HSP 1 Score: 251 bits (640), Expect = 2.250e-71 Identity = 191/516 (37.02%), Postives = 267/516 (51.74%), Query Frame = 2
Query: 77 MTSTRKGAGLALLTLELGVWRAWGQDGIVACGILKSSIADGETLELGSDITCSEEISIDEGVEVTIDGAGYTLSIDADLL--YEEEGTNAVIYNKGSLTLTSLTITVADDTADNKFRAIYNEG--------DLTVNSCFFDGLNLGTDPLDYGGVIYSESTGGTVSIESSEFTSNGCSLKGGAIHAAADEQLTITDCEFSDNEAGTTGEENASGGDVYAADGVTLVVQSSNFRGSAAEYGGAAIHCCGATITNSRFIDAESGSVGNEHYGGAILVGLPGV-GCTQELEMTNSTFTSCSVQQTSGGAGGSLAVFDTTATLDDVTIDYSQGSAVLFQSSDADGSHAIIMSSMEFQYNTNPSAEYASNSLEQGSAFVLQNTAAED--ESVMMGSFDAVYCYSNDPYECEMVFDLAGVTYTGDIKCQICNIDSERLWVGLDEN------STADGSGDTEXXXXXXXXXXXXXXXXXXXXXXEGIVISLSLALGLTLIVIGALAVWKIRAHTNTRLTLRNV 1567
M TRK A LAL L L +A +A +I+ T+EL TC I++ +VTI GA YT+++ A + ++ N+G+L L IT A +T D +L F L GGVIYS+S G T+SI S F SN S NE GT + +GGDVYA V L V + F SAAEYGGAAI CCGA I+++ F A++ A+LV P GC +EL+++NSTF+ C+V T+G AGGS+A+FDT+AT+ D T + S G+AVLF SS G H ++M ++F NT P+ YA+++ EQG+A V+ NT D +V MG F+ +YC++N+PYECE V+D + + ++G+ KCQIC+I+ ER G D++ + DG ++ +GIVI LSLALGLTL+VIGALAVWK R N R + ++
Sbjct: 1 MGFTRKSAVLALFFLGLAARQASAVTTCLALITAVEAISGTGTVELEGGFTCEAYITVAASQDVTISGA-YTITLGAPFAGSTNTDAGGSLFENEGTLKLDG--ITFATETTDGXXXXXXXXXXXXXXXXXELYPTGIF----------LSRGGVIYSDSAG-TISISDSTFKSNLASEXXXXXXXXXXXXXXXXXXXXXXNEVGTGVAADGAGGDVYAGTNVDLTVTGTTFSTSAAEYGGAAIECCGAVISDTVFTGADTXXXXXXXXX-ALLVNRPDQDGCPRELDLSNSTFSGCTVGSTTG-AGGSVAIFDTSATITDCTFESSVGTAVLFSSSSDSGEHQLLMDYVQFNLNTFPAEAYATDT-EQGAAIVVTNTGVADGETTVTMGEFNDMYCFANEPYECEFVYDQSDIVHSGEFKCQICDIEGERQQSGTDDDLIDASERSIDGDSSSDN---------------------QGIVIGLSLALGLTLVVIGALAVWKFRVRKNARRLMEDM 478
BLAST of mRNA_F-serratus_M_contig1425.3043.1 vs. uniprot
Match: D7FVA0_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVA0_ECTSI) HSP 1 Score: 212 bits (539), Expect = 2.450e-57 Identity = 153/400 (38.25%), Postives = 223/400 (55.75%), Query Frame = 2
Query: 203 TLELGSDITCSEEISIDEGVEVTIDGAGYTLSIDADLLYEEEGTNA---VIYNKGSLTLTSLTITVADDTADNKFRAIYNEGDLTVNSCFFDGL-NLGTDPLDYGGVIYSESTGGTVSIESSEFTSNGCSLKGGAIHAAADEQLTITDCEFSDNEAGTTGEENASGGDVYAADGVTLVVQSSNFRGSAAEYGGAAIHCCGATITNSRFIDAESGSVGNEHYGGAILVGLPGV-GCTQELEMTNSTFTSCSVQQTSGGAGGSLAVFDTTATLDDVTIDYSQGSAVLFQSSDADGSHAIIMSSMEFQYNTNPSAEYASNSLEQGSAFVLQNTAAED--ESVMMGSFDAVYCYSNDPYECEMVFDLAGVTYTGDIKCQICNIDSERLWVGLDENSTADGSGDT 1381
T+EL S TC I++D +VTI GA YT+++ A L T+A + N+G+L L IT A + D RA++N + + G + L GGVIYS+S G ++I +S F SN S +GGA++A E LTITD F+ NE GT EE +GGDVYA V L V + F SAAEY +LV P C++EL+++++ F+ CSV T+G AGGS+A+FDT+AT+ D T + S G+AVLF SS G H ++M ++F NT P+ YA+++ EQG+A V+ NT E+ +V+MG F+ +YC+ NDPYECE V+D + + ++G+ CQ+C ID R V ++ + +G G T
Sbjct: 6 TVELESGFTCDAHITVDASQDVTISGA-YTITLGA-LFAGSTATDAGGSLFVNEGTLELDG--ITFATEATDGN-RAVWNGXXXXXXXXXXELFPSGGGEFLARGGVIYSDSDG-EIAISASTFKSNIASERGGAVYAIGSETLTITDSLFTVNEVGTGVEEGGAGGDVYAGINVELTVTGTTFSTSAAEYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XLLVNRPDQDACSRELDLSDTIFSGCSVVSTTG-AGGSVAIFDTSATITDCTFESSVGTAVLFSSSSDSGEHQLLMDYVQFNLNTLPAEAYATDT-EQGAAIVVTNTGVEEGNTTVVMGEFNDMYCFGNDPYECEFVYDQSDIVHSGEFNCQLCVIDGVRQEVSGTDDDSVEGIGQT 396
BLAST of mRNA_F-serratus_M_contig1425.3043.1 vs. uniprot
Match: D7FV99_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV99_ECTSI) HSP 1 Score: 209 bits (531), Expect = 1.180e-55 Identity = 158/443 (35.67%), Postives = 224/443 (50.56%), Query Frame = 2
Query: 77 MTSTRKGAGLALLTLELGVWRAWGQDGIVACGILKSS---IADGETLELGSDITCSEEISIDEGVEVTIDGAGYTLSIDADLLYEEEGTNA---VIYNKGSLTLTSLTITVADDTADNKFRAIYNEG------DLTVNSCFFDGLNLGTDPLDYGGVIYSESTGGTVSIESSEFTSNGCSLKGGAIHAAADEQLTITDCEFSDNEAGTTGEENASGGDVYAADGVTLVVQSSNFRGSAAEYGGAAIHCCGATITNSRFIDAESGSVGNEHYGGAILVGLPGVG-CTQELEMTNSTFTSCSVQQTSGGAGGSLAVFDTTATLDDVTIDYSQGSAVLFQSSDADGSHAIIMSSMEFQYNTNPSAEYASNSLEQGSAFVLQNTAAED--ESVMMGSFDAVYCYSNDPYECEMVFDLAGVTYTGDIKCQICNIDSERLWVGLDENST 1360
M +RK AGLAL L L +A + C L ++ I+ T EL TC I++ +VTI GA YT+++ L T+A + N+G+L L +T +L F L GGV+YS+S G T+SI S FTSN S NE GT + + +GGDVY V L V + F S AEYGGAAI CCGA I+N F A+LV P C ++L++++STF+ C+V T+G AGGS+A+FDT+AT+ D T + S G+AVLF SS G H ++M+ ++F NT P+ Y +++ EQG+A V+ NT D +V MG FD +YC++N+PYECE V+D + + + G+ KCQIC+ID + G D + T
Sbjct: 1 MELSRKSAGLALFFLGLAARQA---SAVTTCPALITAVEAISGTGTAELEGSFTCDTHITVAASQDVTISGA-YTITL-GPLFAGSTDTDAGGSLFMNEGTLKLDGITFATXXXXXXXXXXXXXXXXXXXXXXELYPTGAF----------LSRGGVVYSDSAG-TISISDSTFTSNLASEXXXXXXXXXXXXXXXXXXXXRGNEVGTGVDADGAGGDVYVGTNVELTVTGTTFSTSVAEYGGAAIECCGAVISNCTFXXXXXXXXXXXXXX-ALLVNRPDQDPCPRDLDLSDSTFSGCTVVSTTG-AGGSVAIFDTSATITDCTFESSVGTAVLFSSSSDSGEHQLLMNYVQFNLNTLPAEAYVTDT-EQGAAIVVTNTGVADGETTVTMGEFDDIYCFANEPYECEFVYDQSDIVHNGEFKCQICDIDGVQQVSGTDGDLT 424
BLAST of mRNA_F-serratus_M_contig1425.3043.1 vs. uniprot
Match: A0A6H5L8Q9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8Q9_9PHAE) HSP 1 Score: 113 bits (283), Expect = 2.860e-24 Identity = 93/255 (36.47%), Postives = 127/255 (49.80%), Query Frame = 2
Query: 77 MTSTRKGAGLALLTLELGVWRAWGQDGIVACGILKSSIADGETLELGSDITCSEEISIDEGVEVTIDGAGYTLSIDADLLYEEEGTNAVIYNKGSLTLTSLTITVADDTADNKFRAIYNEGDLTVNSCFFDGLNLGTDPLDYGGVIYSESTGGTVSIESSEFTSNGCSLKGGAIHAAADEQLTITDCEFSDNEAGTTGEENASGGDVYAADGVTLVVQSSNFRGSAAEYGGAAIHCCGATITNSRFIDAESGSVG 841
M T K AGLALL L L +A + +I+D T+EL C I++ G +VTI GA YT++I A + ++ N+G L L +T V + T N RA++N G+L+V C F+ G L GGVIYS+S ++I +S F SN S NE GT + + +GGDVYA V L V + F SAAEYGGAAI CCGA I+++ F A++ S G
Sbjct: 1 MGFTSKTAGLALLFLGLAARQASAVTSCLDLITAVEAISDTGTIELEGGFNCDTFITVTAGQDVTISGA-YTITIGAGFAGSTDEDGSLFVNEGILKLDGITF-VTETTNGN--RAVWNAGELSVEGCTFELYPTGAF-LARGGVIYSDSAE-AIAISNSIFKSNLASEXXXXXXXXXXXXXXXXXXXXXXNEVGTGVDADGAGGDVYAGTNVELTVTGTTFSTSAAEYGGAAIECCGAVISDTVFTGADTASDG 249
BLAST of mRNA_F-serratus_M_contig1425.3043.1 vs. uniprot
Match: A0A6H5KAJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAJ9_9PHAE) HSP 1 Score: 114 bits (286), Expect = 1.970e-22 Identity = 117/437 (26.77%), Postives = 193/437 (44.16%), Query Frame = 2
Query: 218 SDITCSEEISIDEGVEVTIDGA---GYTLSIDADLLYEEEGTNAVIYNKGSLTLTSLTITVADDT----ADNKFRAIYNEGDLTVNSCFFDGLNLGTDPLDYGGVIYSESTGGT-----VSIESSEFTSNGCSLKGGAIHAAADEQLTITDCEFSDNEAGTTGEEN--ASGGDVYAADGVTLVVQSSNFRGSAAEYGGAAIHCCGATITNSRFIDAES---------GSVGNEHYGGAILV----GLPGVGCTQELEMTNSTFTSCSVQQTSGGAGGSLAVFDTTATLDDVTIDYSQGSAVLFQSSDADGSHAIIMSSMEFQYNTNPSAEYASNSLEQGSAFVLQNTAAEDE-----------------------------------------SVMMGSFDAVYCYSNDPYECEMVF-DLAG---VTYTGDIKCQIC 1312
+++ C + I++ GVEV+I A + +++ D L + + +++ N L +T A++ + + RA++N G L V+ C F+ L+ + GG IYS + G+ VS+ +S F N GGAI + +L +++C F NEA G +GG VYA+ GV + V +S+F G + YGGAA+ CGA I S F E+ G + +E A L G G L ++ + F S S S G GG++A D++ ++ + ++ S G + F +SD G + + ++F +N AS+ GSA +L+ T S ++G +YC+ NDPY+CE F D G V TG ++C +C
Sbjct: 69 ANLRCVDAITLPTGVEVSIGSAPDENFLVAVAEDFLVPDPTSASLLVNPEGSYLALDRLTFANEAGVLGSPGEVRAVWNAGQLQVDGCVFESLSFSSQ--QDGGGIYSTAEPGSGSSAFVSVRNSTFIGNVAENHGGAISSWGQGELEVSNCSFVGNEAVGAGSYRRAGAGGAVYASPGVFVTVLNSSFEGCLSRYGGAALFACGANIYESTFDSNEATGLFGAIVNGDLSDEERANATLSLGGGGQSGNYTCPPLFVSGTMFESNSA---STGYGGAIASVDSSLSVFNSSVLSSLGGGIYFGTSDDSGRDQLELELLQFNWNGGS----ASSPDLVGSALLLERTGTPASNTTGPLEQLDPSTSSAXXXXXXXXXXXXXXXXXXXXXXTAGSTLVGVATDIYCFQNDPYDCEAYFGDSDGEIAVQLTGTVRCNVC 496
BLAST of mRNA_F-serratus_M_contig1425.3043.1 vs. uniprot
Match: D7G311_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G311_ECTSI) HSP 1 Score: 109 bits (273), Expect = 7.560e-21 Identity = 117/439 (26.65%), Postives = 192/439 (43.74%), Query Frame = 2
Query: 218 SDITCSEEISIDEGVEVTIDGA---GYTLSIDADLLYEEEGTNAVIYNKGSLTLTSLTITVADDT----ADNKFRAIYNEGDLTVNSCFFDGLNLGTDPLDYGGVIYSESTGGT-----VSIESSEFTSNGCSLKGGAIHAAADEQLTITDCEFSDNEAGTTGEEN--ASGGDVYAADGVTLVVQSSNFRGSAAEYGGAAIHCCGATITNSRFIDAES---------GSVGNEHYGGAILV----GLPGVGCTQELEMTNSTFTSCSVQQTSGGAGGSLAVFDTTATLDDVTIDYSQGSAVLFQSSDADGSHAIIMSSMEFQYNTNPSAEYASNSLEQGSAFVLQNTAAEDE-------------------------------------------SVMMGSFDAVYCYSNDPYECEMVF-DLAG---VTYTGDIKCQIC 1312
+++ C + I++ GVEV+I A + +++ D L + + +++ N L +T A++ + + RA++N G L V+ C F+ L+ + GG IYS + G+ VS+ +S F N GGAI + +L +++C F NEA G +GG VYA+ GV + V +S+F G YGGAA+ CGA I S F E+ G + +E A L G G L ++ + F S S S G GG++A D++ ++ + ++ + G + F +SD G + + ++F +N S+ S L GSA +L+ T S ++G +YC+ NDPY+CE F D G V TG ++C C
Sbjct: 90 ANLRCVDAITLPAGVEVSIGSAPDENFLVAVAEDFLVPDPTSASLLVNPEGSYLALDRLTFANEAGVLGSPGEVRAVWNAGQLDVDGCVFESLSFSSQ--QDGGGIYSMAEPGSGSSAFVSVRNSTFIGNVAENHGGAISSWGQGELEVSNCSFVGNEAVGAGSYRRAGAGGAVYASPGVFVTVLNSSFEGCLGRYGGAALFACGANIYESTFDSNEATGLFGAIVNGDLSDEERANATLSLGGGGQSGNYTCPPLFVSGTMFESNSA---STGYGGAIASVDSSLSVFNSSVLSTLGGGIYFGTSDDSGRDQLELELLQFNWNGGSSS---SPDLV-GSALLLERTGTPASNTTGPLEQVDPSTSSXXXXXXXXXXXXXXXXXXXXXXXXXTAGSTLVGVARDIYCFQNDPYDCEAYFGDSDGEIAVQLTGTVRCNAC 519
BLAST of mRNA_F-serratus_M_contig1425.3043.1 vs. uniprot
Match: A0A6H5L0R7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0R7_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 3.650e-18 Identity = 55/110 (50.00%), Postives = 71/110 (64.55%), Query Frame = 2
Query: 512 IYSESTGGTVSIESSEFTSNGCSLKGGAIHAAADEQLTITDCEFSDNEAGTTGEENASGGDVYAADGVTLVVQSSNFRGSAAEYGGAAIHCCGATITNSRFIDAESGSVG 841
IYS+S G ++I +S F SN S +GGA++A E LTITD F NE GT + + +GGDVYA V L V + F SAAEYGGAAI CCGA I+++ F A++ S G
Sbjct: 14 IYSDSAG-IITISNSIFKSNLASERGGAVYAIGSETLTITDSLFRGNEVGTGVDADGAGGDVYAGTNVELTVTGTTFSTSAAEYGGAAIECCGAVISDTVFTGADTASDG 122 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1425.3043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1425.3043.1 >prot_F-serratus_M_contig1425.3043.1 ID=prot_F-serratus_M_contig1425.3043.1|Name=mRNA_F-serratus_M_contig1425.3043.1|organism=Fucus serratus male|type=polypeptide|length=503bp MTSTRKGAGLALLTLELGVWRAWGQDGIVACGILKSSIADGETLELGSDIback to top mRNA from alignment at F-serratus_M_contig1425:150993..159077+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1425.3043.1 ID=mRNA_F-serratus_M_contig1425.3043.1|Name=mRNA_F-serratus_M_contig1425.3043.1|organism=Fucus serratus male|type=mRNA|length=8085bp|location=Sequence derived from alignment at F-serratus_M_contig1425:150993..159077+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1425:150993..159077+ >mRNA_F-serratus_M_contig1425.3043.1 ID=mRNA_F-serratus_M_contig1425.3043.1|Name=mRNA_F-serratus_M_contig1425.3043.1|organism=Fucus serratus male|type=CDS|length=3018bp|location=Sequence derived from alignment at F-serratus_M_contig1425:150993..159077+ (Fucus serratus male)back to top |