mRNA_F-serratus_M_contig1424.3040.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1424.3040.1
Unique NamemRNA_F-serratus_M_contig1424.3040.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1424.3040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1424contigF-serratus_M_contig1424:44220..44906 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size272
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929408.6241248-CDS-F-serratus_M_contig1424:44220..442441622929408.6241248-CDS-F-serratus_M_contig1424:44220..44244Fucus serratus maleCDSF-serratus_M_contig1424 44221..44244 -
1690962838.2374084-CDS-F-serratus_M_contig1424:44220..442441690962838.2374084-CDS-F-serratus_M_contig1424:44220..44244Fucus serratus maleCDSF-serratus_M_contig1424 44221..44244 -
1622929408.6373138-CDS-F-serratus_M_contig1424:44660..449061622929408.6373138-CDS-F-serratus_M_contig1424:44660..44906Fucus serratus maleCDSF-serratus_M_contig1424 44661..44906 -
1690962838.2455578-CDS-F-serratus_M_contig1424:44660..449061690962838.2455578-CDS-F-serratus_M_contig1424:44660..44906Fucus serratus maleCDSF-serratus_M_contig1424 44661..44906 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1424.3040.1prot_F-serratus_M_contig1424.3040.1Fucus serratus malepolypeptideF-serratus_M_contig1424 44221..44906 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1424.3040.1

>prot_F-serratus_M_contig1424.3040.1 ID=prot_F-serratus_M_contig1424.3040.1|Name=mRNA_F-serratus_M_contig1424.3040.1|organism=Fucus serratus male|type=polypeptide|length=90bp
HYGTSSHVEAIFHPTTLRGQRQDAYSKLLPQSLCIRVKELCRCSAAQLAK
DRNDCATLVRCAGDGNCVTHALLNGLKRGRNQPTSFRHSQ
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mRNA from alignment at F-serratus_M_contig1424:44220..44906-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1424.3040.1 ID=mRNA_F-serratus_M_contig1424.3040.1|Name=mRNA_F-serratus_M_contig1424.3040.1|organism=Fucus serratus male|type=mRNA|length=687bp|location=Sequence derived from alignment at F-serratus_M_contig1424:44220..44906- (Fucus serratus male)
CACTATGGTACTTCATCTCATGTTGAAGCCATCTTCCACCCTACTACGTT
AAGAGGCCAGAGACAGGATGCATATTCAAAGTTACTGCCCCAATCGCTTT
GCATAAGAGTTAAAGAACTGTGCAGATGCTCAGCCGCGCAGCTTGCGAAG
GACCGAAACGACTGCGCGACCCTCGTCAGGTGTGCAGGGGATGGAAACTG
TGTGACTCACGCACTACTCAACGGACTGAAGCGGGGCAGGAACCAGGTGA
GATTAGTCAAGCAAAAGTATAGTACCAACTCAAGCAAAACTTATGATCTA
TTGAGTATAACAGTACTACTTGGTACCAATTCAACCAAAACAGATGTACT
ATTGATGGAATAAGTAGCGCGTGCAACACTCGCGTACATTAGTTTCTCGC
TCGCGCATTAGTTTTTCGCGAAGAGTTATCGCTAAGAACGCATATGGCTC
TTGTGCACGGCTCTCGTGACTGATGCACACACAAAAACATACACCGCACC
TCTTTGAACTTTTACACTTCACACGATATGTCCCTCTGCTTTAGACAGAC
ACCTTTCGTATGCAGTCCCCGATATGTGTATCCAAATATGTACGCTGAAC
CAGGCATGTTTACGATTTTCTTTGCCTCGAACAACGTTTGCTCTTGTGCA
CGTGTGGTGCAGCCCACTTCTTTCCGCCACTCGCAAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1424:44220..44906-

>mRNA_F-serratus_M_contig1424.3040.1 ID=mRNA_F-serratus_M_contig1424.3040.1|Name=mRNA_F-serratus_M_contig1424.3040.1|organism=Fucus serratus male|type=CDS|length=540bp|location=Sequence derived from alignment at F-serratus_M_contig1424:44220..44906- (Fucus serratus male)
CACTATGGTACTTCATCTCATGTTGAAGCCATCTTCCACCCTACTACGTT
AAGAGGCCAGAGACAGGATGCATATTCAAAGTTACTGCCCCAATCGCTTT
GCATAAGAGTTAAAGAACTGTGCAGATGCTCAGCCGCGCAGCTTGCGAAG
GACCGAAACGACTGCGCGACCCTCGTCAGGTGTGCAGGGGATGGAAACTG
TGTGACTCACGCACTACTCAACGGACTGAAGCGGGGCAGGAACCAGCACT
ATGGTACTTCATCTCATGTTGAAGCCATCTTCCACCCTACTACGTTAAGA
GGCCAGAGACAGGATGCATATTCAAAGTTACTGCCCCAATCGCTTTGCAT
AAGAGTTAAAGAACTGTGCAGATGCTCAGCCGCGCAGCTTGCGAAGGACC
GAAACGACTGCGCGACCCTCGTCAGGTGTGCAGGGGATGGAAACTGTGTG
ACTCACGCACTACTCAACGGACTGAAGCGGGGCAGGAACCAGCCCACTTC
TTTCCGCCACTCGCAACCCACTTCTTTCCGCCACTCGCAA
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