mRNA_F-serratus_M_contig1424.3038.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1424.3038.1
Unique NamemRNA_F-serratus_M_contig1424.3038.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1424.3038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1424contigF-serratus_M_contig1424:7284..8286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size504
Cds size489
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1424.3038.1prot_F-serratus_M_contig1424.3038.1Fucus serratus malepolypeptideF-serratus_M_contig1424 7298..8286 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929408.473117-UTR-F-serratus_M_contig1424:7283..72971622929408.473117-UTR-F-serratus_M_contig1424:7283..7297Fucus serratus maleUTRF-serratus_M_contig1424 7284..7297 +
1690962838.1768413-UTR-F-serratus_M_contig1424:7283..72971690962838.1768413-UTR-F-serratus_M_contig1424:7283..7297Fucus serratus maleUTRF-serratus_M_contig1424 7284..7297 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929408.4902072-CDS-F-serratus_M_contig1424:7297..76111622929408.4902072-CDS-F-serratus_M_contig1424:7297..7611Fucus serratus maleCDSF-serratus_M_contig1424 7298..7611 +
1690962838.1850362-CDS-F-serratus_M_contig1424:7297..76111690962838.1850362-CDS-F-serratus_M_contig1424:7297..7611Fucus serratus maleCDSF-serratus_M_contig1424 7298..7611 +
1622929408.5105062-CDS-F-serratus_M_contig1424:8111..82861622929408.5105062-CDS-F-serratus_M_contig1424:8111..8286Fucus serratus maleCDSF-serratus_M_contig1424 8112..8286 +
1690962838.1923187-CDS-F-serratus_M_contig1424:8111..82861690962838.1923187-CDS-F-serratus_M_contig1424:8111..8286Fucus serratus maleCDSF-serratus_M_contig1424 8112..8286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1424.3038.1

>prot_F-serratus_M_contig1424.3038.1 ID=prot_F-serratus_M_contig1424.3038.1|Name=mRNA_F-serratus_M_contig1424.3038.1|organism=Fucus serratus male|type=polypeptide|length=163bp
MFVTGGVFTTQWSKTIPARRHAILLEPNLVVSHHGFPPEIPSLVPRIAEE
RAVPMPGMPSHHRVRKALRRIHPPRSCLQMSLRTFNGRRTRPLRQRSKQE
GRLRSVVWSPARDHSDHRTRVEYPRIKPSAARSERVCFALSTPALASSSR
GASSGLLVNAAVQ
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mRNA from alignment at F-serratus_M_contig1424:7284..8286+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1424.3038.1 ID=mRNA_F-serratus_M_contig1424.3038.1|Name=mRNA_F-serratus_M_contig1424.3038.1|organism=Fucus serratus male|type=mRNA|length=1003bp|location=Sequence derived from alignment at F-serratus_M_contig1424:7284..8286+ (Fucus serratus male)
ACATCAGCATTGGCATGTTCGTCACGGGGGGTGTCTTCACAACGCAGTGG
TCCAAAACAATTCCTGCCAGAAGACACGCCATTCTGCTAGAGCCCAACCT
CGTCGTCAGTCATCACGGCTTTCCGCCGGAGATCCCTTCTCTTGTCCCGC
GTATCGCCGAAGAGCGAGCGGTTCCGATGCCGGGTATGCCGTCGCATCAT
CGGGTCCGAAAGGCACTCCGAAGGATCCACCCGCCACGGAGCTGTCTCCA
GATGTCGTTGCGCACGTTCAACGGTCGGCGGACAAGGCCACTACGCCAGC
GCTCGAAGCAGGAAGGCAGACTACGCAGGTGCTAACGCAATTAGTAAAGT
TTAACGTTGATCCCCTTCTACGTATCGAACTCAGGATTCCGTTCTCTGCT
GCTGTAAATCGTTAGGGGCCGCTTCTAGTTGTGTGTGCTCACCAAAGTAA
TTGCCGGCCGCTTTCCTATTTTCTACGGTCTGGTAGAAGCTGATAGACGC
CCATTTGGGGACCTTTTCGTTGGAGATCATTTCAAGCACTTTTGTTGGTG
CCCACCGGTGACGATATCTGTGTTCTGAGATTGTTCTGACAACTAGCACG
GACGAATAACAGAACCCGCGAAATGCACTATTCCATCGGTTCGCGGCGTG
GATAGTGTATTGTCTTTCTGGACTAGGGCATGGGGGGCACTATGACGCGC
AAGCGAATCGAGCGGGGTCAATGCAAGCCCTCTACGGTATGTCGGAAGTC
CCCTCCTTCCCTTATACCCTCCGCCTTCGTATCCTCCGCCCCTCTCCCCC
CCGGCATTTCCACACGGCCCTGGTGTAGCGTTGTCTGGTCACCTGCCCGT
GACCACTCCGACCACAGAACGCGAGTCGAGTATCCGAGGATAAAGCCATC
CGCAGCACGGTCGGAGAGGGTGTGCTTCGCTCTTTCTACACCAGCATTGG
CATCCTCGTCACGGGGGGCGTCTTCTGGATTGCTTGTCAACGCAGCAGTG
CAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1424:7284..8286+

>mRNA_F-serratus_M_contig1424.3038.1 ID=mRNA_F-serratus_M_contig1424.3038.1|Name=mRNA_F-serratus_M_contig1424.3038.1|organism=Fucus serratus male|type=CDS|length=978bp|location=Sequence derived from alignment at F-serratus_M_contig1424:7284..8286+ (Fucus serratus male)
ATGTTCGTCACGGGGGGTGTCTTCACAACGCAGTGGTCCAAAACAATTCC
TGCCAGAAGACACGCCATTCTGCTAGAGCCCAACCTCGTCGTCAGTCATC
ACGGCTTTCCGCCGGAGATCCCTTCTCTTGTCCCGCGTATCGCCGAAGAG
CGAGCGGTTCCGATGCCGGGTATGCCGTCGCATCATCGGGTCCGAAAGGC
ACTCCGAAGGATCCACCCGCCACGGAGCTGTCTCCAGATGTCGTTGCGCA
CGTTCAACGGTCGGCGGACAAGGCCACTACGCCAGCGCTCGAAGCAGGAA
GGCAGACTACGCAGATGTTCGTCACGGGGGGTGTCTTCACAACGCAGTGG
TCCAAAACAATTCCTGCCAGAAGACACGCCATTCTGCTAGAGCCCAACCT
CGTCGTCAGTCATCACGGCTTTCCGCCGGAGATCCCTTCTCTTGTCCCGC
GTATCGCCGAAGAGCGAGCGGTTCCGATGCCGGGTATGCCGTCGCATCAT
CGGGTCCGAAAGGCACTCCGAAGGATCCACCCGCCACGGAGCTGTCTCCA
GATGTCGTTGCGCACGTTCAACGGTCGGCGGACAAGGCCACTACGCCAGC
GCTCGAAGCAGGAAGGCAGACTACGCAGCGTTGTCTGGTCACCTGCCCGT
GACCACTCCGACCACAGAACGCGAGTCGAGTATCCGAGGATAAAGCCATC
CGCAGCACGGTCGGAGAGGGTGTGCTTCGCTCTTTCTACACCAGCATTGG
CATCCTCGTCACGGGGGGCGTCTTCTGGATTGCTTGTCAACGCAGCAGTG
CAACGTTGTCTGGTCACCTGCCCGTGACCACTCCGACCACAGAACGCGAG
TCGAGTATCCGAGGATAAAGCCATCCGCAGCACGGTCGGAGAGGGTGTGC
TTCGCTCTTTCTACACCAGCATTGGCATCCTCGTCACGGGGGGCGTCTTC
TGGATTGCTTGTCAACGCAGCAGTGCAA
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