mRNA_F-serratus_M_contig1420.3034.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1420.3034.1
Unique NamemRNA_F-serratus_M_contig1420.3034.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1420.3034.1 vs. uniprot
Match: A0A6H5K953_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K953_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 2.170e-41
Identity = 76/139 (54.68%), Postives = 100/139 (71.94%), Query Frame = 1
Query:    1 LYGPGVAPLKDIVNNYAALTGSHKALLASIQLVVFRGILSSL----HFMKPVALNQMRRDVWGNSNDEDVLKRLKEYLQASSALSFAARGQQFTDEELRQLRIRAEDYVENARLTLGRSGVRTSTHNWIHWTDTILNHG 405
            LYGPG  PLKD + +Y   TGSHK L  S+QL+VFRG+L+S+    H++   AL     +VWG  NDE VL RL++YLQASSAL+FAARGQ F+D +L +L +RA D VEN++LTLGR GV+T+ H W+H  ++I  HG
Sbjct:  446 LYGPGALPLKDPIKDYTGYTGSHKGLFGSVQLIVFRGLLASVGAMRHYLSSNALRAQNIEVWGRLNDEGVLDRLRQYLQASSALTFAARGQVFSDSDLVELHVRAGDMVENSKLTLGREGVKTTMHQWLHVAESIRAHG 584          
BLAST of mRNA_F-serratus_M_contig1420.3034.1 vs. uniprot
Match: D7FZ46_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ46_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 5.770e-38
Identity = 74/139 (53.24%), Postives = 98/139 (70.50%), Query Frame = 1
Query:    1 LYGPGVAPLKDIVNNYAALTGSHKALLASIQLVVFRGILSSL----HFMKPVALNQMRRDVWGNSNDEDVLKRLKEYLQASSALSFAARGQQFTDEELRQLRIRAEDYVENARLTLGRSGVRTSTHNWIHWTDTILNHG 405
            L G GV+PLK+ V +Y   TG+ KAL  S+QL+V RG+L S     H++   AL +   ++WG+ + E+V  R+ EY QASS+LSFAA GQ+FTD +L QL  RA DYVENA+LTLGR+GVRTS H W+H+ D+I  HG
Sbjct:  168 LLGAGVSPLKNPVKDYPGYTGAQKALFGSVQLIVLRGLLLSTAMMKHYLNSTALKKYNGEIWGHVSPEEVRDRVLEYFQASSSLSFAANGQEFTDFDLLQLHTRAGDYVENAKLTLGRAGVRTSNHMWLHFADSIKAHG 306          
BLAST of mRNA_F-serratus_M_contig1420.3034.1 vs. uniprot
Match: A0A6H5KN48_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN48_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 4.430e-20
Identity = 48/97 (49.48%), Postives = 64/97 (65.98%), Query Frame = 1
Query:  142 VALNQMRRDVWGNSNDEDVLKRLKEYLQASSALSFAARGQQFTDEELRQLRIRAEDYV---------ENARLTLGRSGVRTSTHNWIHWTDTILNHG 405
            V  ++   + WG+ + E+V  R+ EY QASS+LSFAA GQ+FTD +L +L  RA DYV         ENA+LTLG +GVRTS H W+H+ D+I  HG
Sbjct:    2 VTRHEPTAEKWGDVSPEEVRDRVLEYFQASSSLSFAANGQEFTDLDLDELHTRAGDYVSVAMTTAFVENAKLTLGLAGVRTSNHMWLHFADSIKPHG 98          
BLAST of mRNA_F-serratus_M_contig1420.3034.1 vs. uniprot
Match: A0A6H5K9M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M0_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.490e-19
Identity = 61/141 (43.26%), Postives = 81/141 (57.45%), Query Frame = 1
Query:    1 LYGPGVAPLKDIVNNYAALTGSHKALLASIQLVVFRGILSSLHFMKPVALNQMRRDV------WGNSNDEDVLKRLKEYLQASSALSFAARGQQFTDEELRQLRIRAEDYVENARLTLGRSGVRTSTHNWIHWTDTILNHG 405
            LY PG   +KDIV NYA+LTGS K  L SI L+VFR +L ++  M+    N   R++      WG    E +L+ L+E +  SS LSFA R   FT+ ELRQL   A D VE     +GR+G R + H+ +H  +TI  HG
Sbjct:  858 LYPPGTGKIKDIVTNYASLTGSDKWTLQSIMLLVFRMVLQNVPAMRR---NMNTREINGLKAEWGTY--EGLLEALRELMIRSSLLSFALRAPSFTEPELRQLDKLARDAVEAFSKIMGRTGSRPTIHSILHTVETIRLHG 993          
BLAST of mRNA_F-serratus_M_contig1420.3034.1 vs. uniprot
Match: A0A6H5JM61_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM61_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.240e-16
Identity = 44/93 (47.31%), Postives = 62/93 (66.67%), Query Frame = 1
Query:  127 HFMKPVALNQMRRDVWGNSNDEDVLKRLKEYLQASSALSFAARGQQFTDEELRQLRIRAEDYVENARLTLGRSGVRTSTHNWIHWTDTILNHG 405
            +++   AL +   ++ G+ + E+V  R+ EY Q SS+LSFAA GQ+FTD +L +L  RA DY     LTLGR+GVRTS H W+H+ D+I  HG
Sbjct:   41 NYLNSTALKKYNEEIRGDVSPEEVRDRVLEYFQPSSSLSFAANGQEFTDLDLDELHTRAGDY-----LTLGRAGVRTSNHMWLHFADSIKAHG 128          
BLAST of mRNA_F-serratus_M_contig1420.3034.1 vs. uniprot
Match: A0A6H5JMI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMI6_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.450e-12
Identity = 49/107 (45.79%), Postives = 64/107 (59.81%), Query Frame = 1
Query:    1 LYGPGVAPLKDIVNNYAALTGSHKALLASIQLVVFRGILSSL----HFMKPVALNQMRRDVWGNSNDEDVLKRLKEYLQASSALSFAARGQQFTDEELRQLRIRAED 309
            LY PG   LKDIV NYA+LTGS K  L SI L+VFR +L  +      MK   +N ++ + WG    E+VL+ ++E L+ +S LSFA R   FT+ EL QL   A D
Sbjct:  169 LYPPGTEKLKDIVTNYASLTGSDKWTLQSIMLLVFRMVLQDVPAMRRNMKTREINDLKAE-WGTY--ENVLEAVRELLKRASLLSFARRAPSFTEPELLQLDKLARD 272          
BLAST of mRNA_F-serratus_M_contig1420.3034.1 vs. uniprot
Match: A0A6H5KFX1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX1_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.410e-8
Identity = 31/61 (50.82%), Postives = 41/61 (67.21%), Query Frame = 1
Query:  169 VWGNSNDEDVLKRLKEYLQASSALSFAARGQQFTDEELRQLRIRAEDYVENARLTLGRSGV 351
            +WG+ + E+V  R+ EY QASS+LSFAA GQ+FTD +L +L  RA DYV  A  T   + V
Sbjct:    1 MWGDVSPEEVRDRVLEYFQASSSLSFAANGQEFTDLDLDELHTRAGDYVSVAMTTAFNANV 61          
BLAST of mRNA_F-serratus_M_contig1420.3034.1 vs. uniprot
Match: D7G6T4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6T4_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 2.550e-5
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 1
Query:    1 LYGPGVAPLKDIVNNYAALTGSHKALLASIQLVVFRGILSS 123
            +Y  G APLKDIV +YA+LTGS+K LLASI L+VFR +L S
Sbjct:  706 IYPVGEAPLKDIVTDYASLTGSNKWLLASIMLLVFRPVLHS 746          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1420.3034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5K953_9PHAE2.170e-4154.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZ46_ECTSI5.770e-3853.24Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5KN48_9PHAE4.430e-2049.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9M0_9PHAE1.490e-1943.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JM61_9PHAE1.240e-1647.31Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JMI6_9PHAE1.450e-1245.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFX1_9PHAE1.410e-850.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6T4_ECTSI2.550e-565.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1420contigF-serratus_M_contig1420:192442..193399 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size405
Cds size405
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1420.3034.1prot_F-serratus_M_contig1420.3034.1Fucus serratus malepolypeptideF-serratus_M_contig1420 192442..193399 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929407.8729358-CDS-F-serratus_M_contig1420:192441..1925641622929407.8729358-CDS-F-serratus_M_contig1420:192441..192564Fucus serratus maleCDSF-serratus_M_contig1420 192442..192564 +
1690962837.8761303-CDS-F-serratus_M_contig1420:192441..1925641690962837.8761303-CDS-F-serratus_M_contig1420:192441..192564Fucus serratus maleCDSF-serratus_M_contig1420 192442..192564 +
1622929407.8915894-CDS-F-serratus_M_contig1420:192843..1930321622929407.8915894-CDS-F-serratus_M_contig1420:192843..193032Fucus serratus maleCDSF-serratus_M_contig1420 192844..193032 +
1690962837.8859637-CDS-F-serratus_M_contig1420:192843..1930321690962837.8859637-CDS-F-serratus_M_contig1420:192843..193032Fucus serratus maleCDSF-serratus_M_contig1420 192844..193032 +
1622929407.9051518-CDS-F-serratus_M_contig1420:193306..1933991622929407.9051518-CDS-F-serratus_M_contig1420:193306..193399Fucus serratus maleCDSF-serratus_M_contig1420 193307..193399 +
1690962837.8951714-CDS-F-serratus_M_contig1420:193306..1933991690962837.8951714-CDS-F-serratus_M_contig1420:193306..193399Fucus serratus maleCDSF-serratus_M_contig1420 193307..193399 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1420.3034.1

>prot_F-serratus_M_contig1420.3034.1 ID=prot_F-serratus_M_contig1420.3034.1|Name=mRNA_F-serratus_M_contig1420.3034.1|organism=Fucus serratus male|type=polypeptide|length=135bp
LYGPGVAPLKDIVNNYAALTGSHKALLASIQLVVFRGILSSLHFMKPVAL
NQMRRDVWGNSNDEDVLKRLKEYLQASSALSFAARGQQFTDEELRQLRIR
AEDYVENARLTLGRSGVRTSTHNWIHWTDTILNHG
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mRNA from alignment at F-serratus_M_contig1420:192442..193399+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1420.3034.1 ID=mRNA_F-serratus_M_contig1420.3034.1|Name=mRNA_F-serratus_M_contig1420.3034.1|organism=Fucus serratus male|type=mRNA|length=958bp|location=Sequence derived from alignment at F-serratus_M_contig1420:192442..193399+ (Fucus serratus male)
CTATACGGCCCAGGAGTTGCACCTTTAAAGGATATCGTCAACAACTACGC AGCTCTTACCGGTTCGCACAAGGCTCTTCTCGCGTCTATTCAGCTCGTCG TGTTTCGAGGAATACTTTCTTCCGTTGGAGCCATGGTGAGGGAGATACGA GCTTTGACTCTATTTACAGCATGATGGGCTCAGACAGTAACAGGAAAAAC AGCTAAAATATTCAGATATTACATGTTTCCAAACTTTCAAGGGATATTTC CTTGCTAAGCGAGACACAGCAGCGACACAGGTAATAATGTGCTTCCTCGC AGAGTGCTGGTGACACGATCTCTATATCGACCGTACGCTAGTTTATAGTC GCACATAGTCTCATGTCTCTGCTCTCGTCTGACCTATTCGTAATCCTCAC AGCTTCATTTCATGAAGCCCGTGGCTCTAAATCAGATGCGTCGGGATGTG TGGGGAAATTCGAACGACGAGGACGTGCTCAAGCGATTGAAGGAGTATCT TCAGGCGTCATCTGCTCTCTCTTTCGCGGCCCGGGGCCAGCAGTTCACGG ATGAAGAACTCCGTCAGCTGCGAATCAGGGCAGAGGACTACGTAAGCCTC TCGTACGTTGCACACCATTTTACTCCCGAGCGCGGCTATCAAGTAGTTTG TAGCAAGGTTTGTGTTGATAGTTCAATACTCGTCTATCTGTCGCGTGTTA AGAGACTTCGTCGTTAAACTCTACCGCCGCGTATATCACCGTCGTCCATT CGGCGAAGTGTATTTCTTCTGAACTAAAAAGAGAGCACCATTTTTTGCTC CCGGAACTCTGGTGCATATGGTTGCCGTACTAACCAATATTCTTCGCGAT CTGGTTCCATTGCAGGTTGAAAATGCGAGACTAACACTCGGCCGGTCGGG CGTGAGAACAAGCACACACAATTGGATACACTGGACGGACACTATCCTCA ATCACGGT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1420:192442..193399+

>mRNA_F-serratus_M_contig1420.3034.1 ID=mRNA_F-serratus_M_contig1420.3034.1|Name=mRNA_F-serratus_M_contig1420.3034.1|organism=Fucus serratus male|type=CDS|length=810bp|location=Sequence derived from alignment at F-serratus_M_contig1420:192442..193399+ (Fucus serratus male)
CTATACGGCCCAGGAGTTGCACCTTTAAAGGATATCGTCAACAACTACGC
AGCTCTTACCGGTTCGCACAAGGCTCTTCTCGCGTCTATTCAGCTCGTCG
TGTTTCGAGGAATACTTTCTTCCCTATACGGCCCAGGAGTTGCACCTTTA
AAGGATATCGTCAACAACTACGCAGCTCTTACCGGTTCGCACAAGGCTCT
TCTCGCGTCTATTCAGCTCGTCGTGTTTCGAGGAATACTTTCTTCCCTTC
ATTTCATGAAGCCCGTGGCTCTAAATCAGATGCGTCGGGATGTGTGGGGA
AATTCGAACGACGAGGACGTGCTCAAGCGATTGAAGGAGTATCTTCAGGC
GTCATCTGCTCTCTCTTTCGCGGCCCGGGGCCAGCAGTTCACGGATGAAG
AACTCCGTCAGCTGCGAATCAGGGCAGAGGACTACCTTCATTTCATGAAG
CCCGTGGCTCTAAATCAGATGCGTCGGGATGTGTGGGGAAATTCGAACGA
CGAGGACGTGCTCAAGCGATTGAAGGAGTATCTTCAGGCGTCATCTGCTC
TCTCTTTCGCGGCCCGGGGCCAGCAGTTCACGGATGAAGAACTCCGTCAG
CTGCGAATCAGGGCAGAGGACTACGTTGAAAATGCGAGACTAACACTCGG
CCGGTCGGGCGTGAGAACAAGCACACACAATTGGATACACTGGACGGACA
CTATCCTCAATCACGGTGTTGAAAATGCGAGACTAACACTCGGCCGGTCG
GGCGTGAGAACAAGCACACACAATTGGATACACTGGACGGACACTATCCT
CAATCACGGT
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