mRNA_F-serratus_M_contig1418.3016.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1418.3016.1
Unique NamemRNA_F-serratus_M_contig1418.3016.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1418.3016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1418contigF-serratus_M_contig1418:75200..76089 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size890
Cds size885
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929404.8476758-UTR-F-serratus_M_contig1418:75199..752041622929404.8476758-UTR-F-serratus_M_contig1418:75199..75204Fucus serratus maleUTRF-serratus_M_contig1418 75200..75204 +
1690962836.3317115-UTR-F-serratus_M_contig1418:75199..752041690962836.3317115-UTR-F-serratus_M_contig1418:75199..75204Fucus serratus maleUTRF-serratus_M_contig1418 75200..75204 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929404.8710184-CDS-F-serratus_M_contig1418:75204..760891622929404.8710184-CDS-F-serratus_M_contig1418:75204..76089Fucus serratus maleCDSF-serratus_M_contig1418 75205..76089 +
1690962836.3484237-CDS-F-serratus_M_contig1418:75204..760891690962836.3484237-CDS-F-serratus_M_contig1418:75204..76089Fucus serratus maleCDSF-serratus_M_contig1418 75205..76089 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1418.3016.1prot_F-serratus_M_contig1418.3016.1Fucus serratus malepolypeptideF-serratus_M_contig1418 75205..76089 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1418.3016.1

>prot_F-serratus_M_contig1418.3016.1 ID=prot_F-serratus_M_contig1418.3016.1|Name=mRNA_F-serratus_M_contig1418.3016.1|organism=Fucus serratus male|type=polypeptide|length=295bp
MKKWPQGDREGDAGGQWDDNAGREEESQNLGWEDVENERDQKLGGVKEGE
DEGGTKAADPGAEGEVFPEGLWRAGGPMREGVGGEGRDEGDKDEGRDDVE
EKGEEGADGVIGAAASSTPGTDKGQWAGNGEEGEGVGGVIGSASSSTPAA
GDGGRKGNAEGVVDGVIGAAASSTPSAGNGGDEGEAEGEGDRVIDAVANL
APRTDKGQGEEGGEQAAEMGGVIGAAASSTPPAGGGGGKDEEGGVTNAVD
RSTPDTGKGQGEGKGEEVGEVDVLGDGRGGGDVEGKGEGNSESAA
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mRNA from alignment at F-serratus_M_contig1418:75200..76089+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1418.3016.1 ID=mRNA_F-serratus_M_contig1418.3016.1|Name=mRNA_F-serratus_M_contig1418.3016.1|organism=Fucus serratus male|type=mRNA|length=890bp|location=Sequence derived from alignment at F-serratus_M_contig1418:75200..76089+ (Fucus serratus male)
GGGAGATGAAGAAATGGCCGCAGGGGGACAGAGAGGGTGACGCCGGAGGT
CAATGGGACGACAACGCGGGCCGCGAAGAGGAATCGCAAAACTTGGGGTG
GGAGGATGTTGAGAACGAGCGAGACCAAAAACTTGGGGGCGTAAAAGAGG
GTGAGGATGAGGGTGGTACCAAGGCAGCAGACCCCGGCGCGGAGGGCGAA
GTATTTCCTGAAGGATTGTGGCGTGCGGGTGGCCCAATGCGGGAAGGTGT
GGGCGGGGAGGGCAGGGATGAAGGCGATAAGGACGAAGGTAGAGACGATG
TAGAGGAAAAGGGAGAAGAGGGTGCAGATGGCGTCATTGGCGCCGCGGCC
AGCTCTACGCCCGGCACAGATAAAGGTCAGTGGGCAGGAAACGGAGAGGA
GGGGGAAGGGGTAGGCGGCGTGATCGGTTCCGCATCTAGCTCGACGCCGG
CAGCTGGTGATGGCGGAAGGAAAGGCAATGCGGAGGGCGTAGTAGATGGC
GTGATTGGCGCCGCGGCTAGCTCAACGCCTTCCGCGGGTAATGGTGGAGA
TGAGGGCGAGGCGGAGGGCGAAGGAGATCGCGTGATCGACGCCGTGGCTA
ACTTGGCGCCCCGCACAGATAAAGGCCAAGGGGAGGAGGGGGGAGAGCAG
GCGGCAGAGATGGGCGGTGTGATAGGTGCCGCAGCTAGCTCGACGCCTCC
AGCGGGTGGTGGTGGAGGTAAGGACGAAGAAGGTGGTGTGACTAACGCCG
TGGACAGGTCTACTCCCGACACAGGTAAAGGTCAAGGGGAAGGGAAAGGA
GAGGAGGTAGGGGAGGTGGACGTCTTGGGTGATGGTAGAGGAGGCGGCGA
TGTGGAGGGAAAGGGCGAGGGGAACAGTGAGTCTGCAGCT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1418:75200..76089+

>mRNA_F-serratus_M_contig1418.3016.1 ID=mRNA_F-serratus_M_contig1418.3016.1|Name=mRNA_F-serratus_M_contig1418.3016.1|organism=Fucus serratus male|type=CDS|length=1770bp|location=Sequence derived from alignment at F-serratus_M_contig1418:75200..76089+ (Fucus serratus male)
ATGAAGAAATGGCCGCAGGGGGACAGAGAGGGTGACGCCGGAGGTCAATG
GGACGACAACGCGGGCCGCGAAGAGGAATCGCAAAACTTGGGGTGGGAGG
ATGTTGAGAACGAGCGAGACCAAAAACTTGGGGGCGTAAAAGAGGGTGAG
GATGAGGGTGGTACCAAGGCAGCAGACCCCGGCGCGGAGGGCGAAGTATT
TCCTGAAGGATTGTGGCGTGCGGGTGGCCCAATGCGGGAAGGTGTGGGCG
GGGAGGGCAGGGATGAAGGCGATAAGGACGAAGGTAGAGACGATGTAGAG
GAAAAGGGAGAAGAGGGTGCAGATGGCGTCATTGGCGCCGCGGCCAGCTC
TACGCCCGGCACAGATAAAGGTCAGTGGGCAGGAAACGGAGAGGAGGGGG
AAGGGGTAGGCGGCGTGATCGGTTCCGCATCTAGCTCGACGCCGGCAGCT
GGTGATGGCGGAAGGAAAGGCAATGCGGAGGGCGTAGTAGATGGCGTGAT
TGGCGCCGCGGCTAGCTCAACGCCTTCCGCGGGTAATGGTGGAGATGAGG
GCGAGGCGGAGGGCGAAGGAGATCGCGTGATCGACGCCGTGGCTAACTTG
GCGCCCCGCACAGATAAAGGCCAAGGGGAGGAGGGGGGAGAGCAGGCGGC
AGAGATGGGCGGTGTGATAGGTGCCGCAGCTAGCTCGACGCCTCCAGCGG
GTGGTGGTGGAGGTAAGGACGAAGAAGGTGGTGTGACTAACGCCGTGGAC
AGGTCTACTCCCGACACAGGTAAAGGTCAAGGGGAAGGGAAAGGAGAGGA
GGTAGGGGAGGTGGACGTCTTGGGTGATGGTAGAGGAGGCGGCGATGTGG
AGGGAAAGGGCGAGGGGAACAGTGAGTCTGCAGCTATGAAGAAATGGCCG
CAGGGGGACAGAGAGGGTGACGCCGGAGGTCAATGGGACGACAACGCGGG
CCGCGAAGAGGAATCGCAAAACTTGGGGTGGGAGGATGTTGAGAACGAGC
GAGACCAAAAACTTGGGGGCGTAAAAGAGGGTGAGGATGAGGGTGGTACC
AAGGCAGCAGACCCCGGCGCGGAGGGCGAAGTATTTCCTGAAGGATTGTG
GCGTGCGGGTGGCCCAATGCGGGAAGGTGTGGGCGGGGAGGGCAGGGATG
AAGGCGATAAGGACGAAGGTAGAGACGATGTAGAGGAAAAGGGAGAAGAG
GGTGCAGATGGCGTCATTGGCGCCGCGGCCAGCTCTACGCCCGGCACAGA
TAAAGGTCAGTGGGCAGGAAACGGAGAGGAGGGGGAAGGGGTAGGCGGCG
TGATCGGTTCCGCATCTAGCTCGACGCCGGCAGCTGGTGATGGCGGAAGG
AAAGGCAATGCGGAGGGCGTAGTAGATGGCGTGATTGGCGCCGCGGCTAG
CTCAACGCCTTCCGCGGGTAATGGTGGAGATGAGGGCGAGGCGGAGGGCG
AAGGAGATCGCGTGATCGACGCCGTGGCTAACTTGGCGCCCCGCACAGAT
AAAGGCCAAGGGGAGGAGGGGGGAGAGCAGGCGGCAGAGATGGGCGGTGT
GATAGGTGCCGCAGCTAGCTCGACGCCTCCAGCGGGTGGTGGTGGAGGTA
AGGACGAAGAAGGTGGTGTGACTAACGCCGTGGACAGGTCTACTCCCGAC
ACAGGTAAAGGTCAAGGGGAAGGGAAAGGAGAGGAGGTAGGGGAGGTGGA
CGTCTTGGGTGATGGTAGAGGAGGCGGCGATGTGGAGGGAAAGGGCGAGG
GGAACAGTGAGTCTGCAGCT
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