mRNA_F-serratus_M_contig1416.3011.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1416.3011.1
Unique NamemRNA_F-serratus_M_contig1416.3011.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1416.3011.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 8.150e-13
Identity = 39/85 (45.88%), Postives = 54/85 (63.53%), Query Frame = 1 
Query:    1 QVASYVNATKDIGLRFVRGSGLRQSVYADADYAATSNDRRSVSGVAVVLGDASTSWKSITQKCVATATCGTEYVGSCDAANEAIF 255
            Q+ SY+NAT D+G+ +VRGSGL   VY DA YA     RRSV+G+AV +G    S  S TQ+ V+ +T   EY+ + +   EA+F
Sbjct: 1068 QILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALF 1152
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BLAST of mRNA_F-serratus_M_contig1416.3011.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 8.220e-13
Identity = 39/85 (45.88%), Postives = 54/85 (63.53%), Query Frame = 1 
Query:    1 QVASYVNATKDIGLRFVRGSGLRQSVYADADYAATSNDRRSVSGVAVVLGDASTSWKSITQKCVATATCGTEYVGSCDAANEAIF 255
            Q+ SY+NAT D+G+ +VRGSGL   VY DA YA     RRSV+G+AV +G    S  S TQ+ V+ +T   EY+ + +   EA+F
Sbjct: 1621 QILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALF 1705
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BLAST of mRNA_F-serratus_M_contig1416.3011.1 vs. uniprot
Match: A0A6H5K9K6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K6_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 3.220e-12
Identity = 38/84 (45.24%), Postives = 53/84 (63.10%), Query Frame = 1 
Query:    4 VASYVNATKDIGLRFVRGSGLRQSVYADADYAATSNDRRSVSGVAVVLGDASTSWKSITQKCVATATCGTEYVGSCDAANEAIF 255
            + SY+NAT D+G+ +VRGSGL   VY DA YA     RRSV+G+AV +G    S  S TQ+ V+ +T   EY+ + +   EA+F
Sbjct:  194 ILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALF 277
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BLAST of mRNA_F-serratus_M_contig1416.3011.1 vs. uniprot
Match: A0A6H5L9N7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9N7_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 7.940e-11
Identity = 35/85 (41.18%), Postives = 54/85 (63.53%), Query Frame = 1 
Query:    1 QVASYVNATKDIGLRFVRGSGLRQSVYADADYAATSNDRRSVSGVAVVLGDASTSWKSITQKCVATATCGTEYVGSCDAANEAIF 255
            ++ SY+N TKD+G+ +VRGSGL   V+ D+ YA ++ DRRS +G+AV +G       + TQ   A +T   EY+ + +  NEA+F
Sbjct:   76 RIMSYLNETKDLGITYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIAAGEGVNEALF 160
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BLAST of mRNA_F-serratus_M_contig1416.3011.1 vs. uniprot
Match: A0A6H5KCR8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCR8_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.210e-10
Identity = 34/85 (40.00%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:    1 QVASYVNATKDIGLRFVRGSGLRQSVYADADYAATSNDRRSVSGVAVVLGDASTSWKSITQKCVATATCGTEYVGSCDAANEAIF 255
            ++ SY+N TKD+G+ +VRGSGL   V+ D+ YA ++ DRRS +G+AV +G       + TQ   A +T   EY+ + +   EA+F
Sbjct:    7 RIMSYLNETKDLGITYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIAAGEGVKEALF 91
[Close]
BLAST of mRNA_F-serratus_M_contig1416.3011.1 vs. uniprot
Match: A0A6H5KR64_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR64_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.810e-10
Identity = 34/85 (40.00%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:    1 QVASYVNATKDIGLRFVRGSGLRQSVYADADYAATSNDRRSVSGVAVVLGDASTSWKSITQKCVATATCGTEYVGSCDAANEAIF 255
            ++ SY+N TKD+G+ +VRGSGL   V+ D+ YA ++ DRRS +G+AV +G       + TQ   A +T   EY+ + +   EA+F
Sbjct:   34 RIMSYLNETKDLGIAYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIAAGEGVKEALF 118
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BLAST of mRNA_F-serratus_M_contig1416.3011.1 vs. uniprot
Match: A0A6H5JU54_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU54_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 2.040e-10
Identity = 35/85 (41.18%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:    1 QVASYVNATKDIGLRFVRGSGLRQSVYADADYAATSNDRRSVSGVAVVLGDASTSWKSITQKCVATATCGTEYVGSCDAANEAIF 255
            ++ SY+N TKD+G+ +VRGSGL   V+ D+ YA ++ DRRS +G+AV +G       + TQ   A +T   EY+   +A  EA+F
Sbjct:  193 RIMSYLNETKDLGITYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIAGGEAVKEALF 277
[Close]
BLAST of mRNA_F-serratus_M_contig1416.3011.1 vs. uniprot
Match: A0A6H5K887_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K887_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 2.560e-10
Identity = 34/85 (40.00%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:    1 QVASYVNATKDIGLRFVRGSGLRQSVYADADYAATSNDRRSVSGVAVVLGDASTSWKSITQKCVATATCGTEYVGSCDAANEAIF 255
            ++ SY+N TKD+G+ +VRGSGL   V+ D+ YA ++ DRRS +G+AV +G       + TQ   A +T   EY+ + +   EA+F
Sbjct:   34 RIMSYLNETKDLGITYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIAAGEGVKEALF 118
[Close]
BLAST of mRNA_F-serratus_M_contig1416.3011.1 vs. uniprot
Match: A0A6H5K588_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K588_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 2.580e-10
Identity = 34/85 (40.00%), Postives = 52/85 (61.18%), Query Frame = 1 
Query:    1 QVASYVNATKDIGLRFVRGSGLRQSVYADADYAATSNDRRSVSGVAVVLGDASTSWKSITQKCVATATCGTEYVGSCDAANEAIF 255
            ++ SY+N TKD+G+ +VRGSGL   V+ D+ YA ++ DRRS +G+AV +G       + TQ   A  T   EY+ + +   EA+F
Sbjct:   76 RIMSYLNETKDLGITYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQPTTEAEYIAAGEGVKEALF 160
[Close]
BLAST of mRNA_F-serratus_M_contig1416.3011.1 vs. uniprot
Match: A0A6H5JRV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRV3_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 2.880e-10
Identity = 34/85 (40.00%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:    1 QVASYVNATKDIGLRFVRGSGLRQSVYADADYAATSNDRRSVSGVAVVLGDASTSWKSITQKCVATATCGTEYVGSCDAANEAIF 255
            ++ SY+N TKD+G+ +VRGSGL   V+ D+ YA ++ DRRS +G+AV +G       + TQ   A +T   EY+ + +   EA+F
Sbjct:  102 RILSYLNETKDLGITYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIAAGEGVKEALF 186
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1416.3011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKS3_9PHAE8.150e-1345.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L175_9PHAE8.220e-1345.88Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9K6_9PHAE3.220e-1245.24Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L9N7_9PHAE7.940e-1141.18Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KCR8_9PHAE1.210e-1040.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KR64_9PHAE1.810e-1040.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU54_9PHAE2.040e-1041.18Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K887_9PHAE2.560e-1040.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K588_9PHAE2.580e-1040.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRV3_9PHAE2.880e-1040.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1416contigF-serratus_M_contig1416:91624..91878 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score61.2
Seed ortholog evalue2.6e-07
Seed eggNOG ortholog102107.XP_008237766.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.NB-ARC domain
EggNOG OGs3894G@33090,3GY0K@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size255
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929404.3917887-CDS-F-serratus_M_contig1416:91623..918781622929404.3917887-CDS-F-serratus_M_contig1416:91623..91878Fucus serratus maleCDSF-serratus_M_contig1416 91624..91878 -
1690962836.2104025-CDS-F-serratus_M_contig1416:91623..918781690962836.2104025-CDS-F-serratus_M_contig1416:91623..91878Fucus serratus maleCDSF-serratus_M_contig1416 91624..91878 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1416.3011.1prot_F-serratus_M_contig1416.3011.1Fucus serratus malepolypeptideF-serratus_M_contig1416 91624..91878 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1416.3011.1

>prot_F-serratus_M_contig1416.3011.1 ID=prot_F-serratus_M_contig1416.3011.1|Name=mRNA_F-serratus_M_contig1416.3011.1|organism=Fucus serratus male|type=polypeptide|length=85bp
QVASYVNATKDIGLRFVRGSGLRQSVYADADYAATSNDRRSVSGVAVVLG
DASTSWKSITQKCVATATCGTEYVGSCDAANEAIF
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mRNA from alignment at F-serratus_M_contig1416:91624..91878-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1416.3011.1 ID=mRNA_F-serratus_M_contig1416.3011.1|Name=mRNA_F-serratus_M_contig1416.3011.1|organism=Fucus serratus male|type=mRNA|length=255bp|location=Sequence derived from alignment at F-serratus_M_contig1416:91624..91878- (Fucus serratus male)
CAGGTAGCTTCGTATGTGAATGCGACGAAAGATATCGGTTTGAGGTTCGT
TCGGGGTTCTGGTTTGAGACAATCTGTGTACGCAGATGCTGATTACGCGG
CGACATCCAACGATCGAAGGTCCGTGTCGGGTGTAGCGGTAGTTCTTGGC
GATGCATCAACAAGCTGGAAAAGTATTACGCAGAAATGTGTGGCGACTGC
AACGTGTGGAACTGAGTACGTAGGCTCTTGTGATGCAGCAAATGAAGCGA
TATTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1416:91624..91878-

>mRNA_F-serratus_M_contig1416.3011.1 ID=mRNA_F-serratus_M_contig1416.3011.1|Name=mRNA_F-serratus_M_contig1416.3011.1|organism=Fucus serratus male|type=CDS|length=510bp|location=Sequence derived from alignment at F-serratus_M_contig1416:91624..91878- (Fucus serratus male)
CAGGTAGCTTCGTATGTGAATGCGACGAAAGATATCGGTTTGAGGTTCGT
TCGGGGTTCTGGTTTGAGACAATCTGTGTACGCAGATGCTGATTACGCGG
CGACATCCAACGATCGAAGGTCCGTGTCGGGTGTAGCGGTAGTTCTTGGC
GATGCATCAACAAGCTGGAAAAGTATTACGCAGAAATGTGTGGCGACTGC
AACGTGTGGAACTGAGTACGTAGGCTCTTGTGATGCAGCAAATGAAGCGA
TATTCCAGGTAGCTTCGTATGTGAATGCGACGAAAGATATCGGTTTGAGG
TTCGTTCGGGGTTCTGGTTTGAGACAATCTGTGTACGCAGATGCTGATTA
CGCGGCGACATCCAACGATCGAAGGTCCGTGTCGGGTGTAGCGGTAGTTC
TTGGCGATGCATCAACAAGCTGGAAAAGTATTACGCAGAAATGTGTGGCG
ACTGCAACGTGTGGAACTGAGTACGTAGGCTCTTGTGATGCAGCAAATGA
AGCGATATTC
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