mRNA_F-serratus_M_contig1415.3008.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1415.3008.1
Unique NamemRNA_F-serratus_M_contig1415.3008.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1415.3008.1 vs. uniprot
Match: A0A6H5KK34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK34_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.520e-10
Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:    1 CNSCTSIADDHKMVLCKGVGCEGK-YHYECLPVPLEGVPAG--PWFCPACIEAQKSNN 165
            CN+C S  DD K++LC G GC    YHY+CLPVPL+G+P G  PWFCP C   +K ++
Sbjct:  961 CNACGSTDDDEKILLCDGPGCNSTPYHYDCLPVPLKGLPLGTDPWFCPRCAHGKKPSS 1018
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BLAST of mRNA_F-serratus_M_contig1415.3008.1 vs. uniprot
Match: A0A7S4W153_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4W153_9DINO)

HSP 1 Score: 55.5 bits (132), Expect = 7.100e-5
Identity = 25/58 (43.10%), Postives = 33/58 (56.90%), Query Frame = 1 
Query:    1 CNSCTSIADDHKMVLCKGVG--CEGKYHYECLPVPLEGVPAGPWFCPACIEAQKSNNA 168
            C  C    D+HK++LC G+G  C   YHY C  V L  VP G WFCP C  ++ + +A
Sbjct:   50 CQVCNKSNDEHKLLLCDGLGGRCNAAYHYYC--VGLSYVPEGDWFCPPCSASRGAISA 105
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1415.3008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KK34_9PHAE1.520e-1053.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4W153_9DINO7.100e-543.10Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1415contigF-serratus_M_contig1415:218570..222307 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue6.7e-07
Seed eggNOG ortholog2903.EOD39433
Hectar predicted targeting categoryother localisation
EggNOG free text desc.peripheral T cell tolerance induction
EggNOG OGsCOG0553@1,KOG0383@2759
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1453
Cds size1449
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1415.3008.1prot_F-serratus_M_contig1415.3008.1Fucus serratus malepolypeptideF-serratus_M_contig1415 218570..222305 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929402.5039356-CDS-F-serratus_M_contig1415:218569..2186361622929402.5039356-CDS-F-serratus_M_contig1415:218569..218636Fucus serratus maleCDSF-serratus_M_contig1415 218570..218636 +
1690962835.2279804-CDS-F-serratus_M_contig1415:218569..2186361690962835.2279804-CDS-F-serratus_M_contig1415:218569..218636Fucus serratus maleCDSF-serratus_M_contig1415 218570..218636 +
1622929402.519131-CDS-F-serratus_M_contig1415:219098..2199611622929402.519131-CDS-F-serratus_M_contig1415:219098..219961Fucus serratus maleCDSF-serratus_M_contig1415 219099..219961 +
1690962835.2472427-CDS-F-serratus_M_contig1415:219098..2199611690962835.2472427-CDS-F-serratus_M_contig1415:219098..219961Fucus serratus maleCDSF-serratus_M_contig1415 219099..219961 +
1622929402.5311987-CDS-F-serratus_M_contig1415:221786..2223051622929402.5311987-CDS-F-serratus_M_contig1415:221786..222305Fucus serratus maleCDSF-serratus_M_contig1415 221787..222305 +
1690962835.2628245-CDS-F-serratus_M_contig1415:221786..2223051690962835.2628245-CDS-F-serratus_M_contig1415:221786..222305Fucus serratus maleCDSF-serratus_M_contig1415 221787..222305 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1415.3008.1

>prot_F-serratus_M_contig1415.3008.1 ID=prot_F-serratus_M_contig1415.3008.1|Name=mRNA_F-serratus_M_contig1415.3008.1|organism=Fucus serratus male|type=polypeptide|length=483bp
CNSCTSIADDHKMVLCKGVGCEGKYHYECLPVPLEGVPAGPWFCPACIEA
QKSNNAGAGFHGRGGGITVGDGLGGARGGRRAGRATGVSAEGVVGEAGGG
AEVAAFEGEEGLRGAGEGAASVGRGGTEVTTVTTESTEAGAGEASGEGVL
AAGDERTESEEVLSVGDGTTSSEGAETGTAPTGSAETPPTTLGEEGGSSG
CANPRDGVTLLKTSARSRRGVPSNYRFVPEDERAELAKKYGRPDPGDGDV
GGGGNASCSESSYVSGGDSSSQGKGGSSDRSRLRGNGMALRSSPGSWQDI
PYRFVDGNKQYEELPVRFKSQRGGPGRIPEESSAPRHDRCSYRGCQASGR
RAVEANVPPSGIASAASTNPVKVALASASERTEKCRELIVEGWPEEQRWA
CGSEACILHRHSFHGRCLVVHIGNSAVAPAAEAITDMDVDPGADTDANAG
VNTTSSVDAPADASANTSVDASANTSAGAPADA
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mRNA from alignment at F-serratus_M_contig1415:218570..222307+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1415.3008.1 ID=mRNA_F-serratus_M_contig1415.3008.1|Name=mRNA_F-serratus_M_contig1415.3008.1|organism=Fucus serratus male|type=mRNA|length=3738bp|location=Sequence derived from alignment at F-serratus_M_contig1415:218570..222307+ (Fucus serratus male)
TGCAACAGCTGCACAAGCATCGCCGACGACCACAAGATGGTGCTGTGCAA
AGGCGTCGGCTGCGAGGGTAAGGAAATAATATGTTGCCGTGGCTTGGGGA
GGCTAGCACTCGTCGAGGGGGGTGGTTGGCAGGGCGAAAAAAGTGCTGCT
GTACCGCTATACTTGGGCGAAGAAGTACTATGTACTATTTATCACATAAA
GGAACTTTGATATGTACGGTAGAGGTGTAGTGACAGAAATTTGATCTCGC
TCTAGAAAAGTGCTGTGCTCGATGCGGGCGGCGACAAAACTCGAGGGTTT
TCTGTTAAGATGCTCTAGATGAATAGAACGTTCCCTCCCTCCCCCCGGCT
TGTCGGCGGTAACAAAGAAGCGAATTTGGTCATTTCGTGTGTAGGTTATA
AGTGTGGGGTGGATGGAGGAGGGGATCGGGGACGTGTAAGCGAGAAAACG
AGAGAGAGAGATGGTGTGTATATGTGTGGTTCATGTGTGTTTTCTTGTGC
CCATTTTTCCGCCGCTGCCGTCAAAATAGGCAAGTATCACTACGAGTGTC
TCCCTGTTCCGCTGGAGGGCGTCCCTGCGGGTCCGTGGTTCTGCCCCGCC
TGCATCGAGGCGCAAAAATCGAACAACGCTGGCGCAGGCTTCCACGGGAG
AGGCGGAGGTATCACCGTAGGTGATGGGCTTGGCGGCGCTAGAGGAGGGA
GGAGAGCAGGACGAGCAACAGGAGTATCCGCTGAAGGAGTAGTAGGAGAG
GCAGGCGGAGGAGCCGAAGTAGCAGCATTCGAAGGGGAGGAAGGACTACG
AGGTGCTGGAGAAGGAGCTGCATCTGTAGGAAGGGGAGGAACAGAAGTAA
CAACGGTAACAACAGAATCGACAGAAGCAGGCGCAGGGGAAGCTTCAGGA
GAAGGAGTGCTGGCAGCAGGCGATGAAAGAACAGAATCAGAAGAAGTTTT
GTCAGTAGGCGATGGAACGACATCATCAGAAGGAGCAGAGACAGGGACAG
CTCCAACAGGATCAGCAGAAACACCACCAACAACCCTAGGGGAAGAAGGG
GGGAGTTCTGGTTGCGCCAACCCTCGCGACGGGGTGACTCTTTTGAAGAC
TTCAGCGCGCTCTCGGCGTGGAGTTCCTTCTAACTACAGGTTCGTGCCGG
AGGATGAGAGGGCGGAGCTCGCCAAGAAATACGGCCGCCCTGACCCTGGA
GATGGTGACGTTGGCGGCGGCGGTAACGCGAGCTGTAGCGAAAGCAGTTA
CGTGAGCGGTGGCGACAGCAGTAGCCAAGGCAAGGGCGGGTCGTCGGATC
GCTCTCGACTTCGCGGTAACGGGATGGCGCTCAGATCGTCGCCTGGATCT
TGGCAAGACATTCCTTACCGTTTCGTGGACGGGAACAAGCAGGTAAGAAT
GAGAATCAAAGAAAAGACGGTACGATTACAGCAGCCACGATTACATAACC
GTAAGCGGGATACACACTTTCGAGTGAAAAGAGTTTATAGAGTAAAAGGT
ATTTTCTCCCGGTGTAGTGGCAATCATCCCCAAGCTCTGTATCCACAATG
CAGTAGTGTGCCAGATTGTTGCTTCCATTTGGCACGAGGAGTTTTGTTGT
AAAAAATTGTTTTGATTTGTTTTCTGGGTTAAGCTTCAGTATGTTTTATG
CTGTTCAATGTGTTATGTTTGTGGGATGAAAACCCGAACAAATCGCAGCG
ACAGCAACGGCAGCACGAGATGGCTCGTGATCGGCAAAGGCAACTCAGAG
AACGTCGTCGCCAAGGAAATCTTGGCGATACGGCTTTAGAAGGGGATTCG
AGCAGAGAGTTCCTTTCCCATAAAATAGACGGCGAGGGCGATATCAACCT
CGAACAAAGGCATCAGCAGGGGGTGGCATGCGAGAGGGATTCGAAAGAGC
TCGTGCGGCCGACCTTGACCGCTAGGTTGCGCAAACCGAAGCTCAGGGAG
CACCGCCGCGAAGAAAACCATGGCGAGGCGGCATGCGAAGGGGATCCCAC
TAAAGAATCTCCTCCCCAGAAGAAAAACGGTGACGGCGATGTTGACCTCG
AACAAGGGCATCGGCCGGGGGTGACATTTGAGAAGGATCCAAAAGAGCTC
GTGCGGCCCACCTGGGTCGCTAGGGTGCACGAGTTGGCTCGCGAGCGGCA
AAAGCGGTTCAGAGAACGTCGTCGCCAGCAAAAAAAAGCGGCCGATGCGG
CCCACGGTATGGATCCAGGCGTAAAGAGTGGTCAGATAGATGTAGAGGAA
TACCGCCGCCTTAGTAGGGAAAGGATTACAGAGACGAGAGACGTTTTTGC
ACGGACGGCTAGCGATCGCGAAGTAGAAAAAATGCGCCGTCGCGACAAAG
AACGGAAGGAAAAGAGGGCAAAAAAGCTTGAAGAGAACCCCGATGCTGCC
GAAGAGAGACGGCGCAAGGAAAGCGGGCGCTCAAGTCGGCGGAGGCAGGA
ATTGATTAAGCAGAACCCCGGTGCTTTGGATGAGATTCGGTGTGGAGCGA
GGGATATCCAAAGACAGAGGAGAGAAACTTTTATTCGAACAAACCCCGGT
GCTTTAGATGAAATACGGCGTAGGGCGAGCGATCGCGAGAGGTACCGAAG
TGAAAGACTGGATCGAGAGAACCCCAGTCCTCTAGATGAAATGTGTCGTA
GACAGAGGGATCAACAAATGCTGAACCTACAGAGACTGGCCCGAGAGAAC
CACAGCGCTGTTGATAATATTGGGCGCGTTGAGAGGGATCGCTACAGGCG
AATGAAAGCGAGACAGACATTGCGCACAGTTTTCACTCAAAGTGCCGACC
CGGTGGGAGACAATCTTCGTTTCGAGGCGGCCCGCCTACTACCTCCGCAC
CCGGACAAAGATCAGGCGCTGCCGAGGGTGTGTTTTGCTTTTTAACATTT
ATTTTCCTCTTCGATCCTCTTGTTCTGGTTTAGTGCAGTAATATTTTTCG
TTTTGCAATTCGACCATTTTGCGTAAGCCTGCGGGGGCGTTTTCTTTAAA
GGTGTGTCCGTATTTGTTCTCCCTTCTACAGCTTTTCAGTTGCGCCCGCC
GCTGCCTTTCTACTTCGCTCCCCTCTTACATTACATGCTCGAGAGGCATA
AATGTATCGCCGCGGCCTACAACCCTTCCTCCCCCCGCCCCCATTCCCCC
TCCCCCCGACCGAACGCCTCTGTAAAAATTGAATCCGGCGCCGACCCCAA
TCCACGCTTGCACGCAGTATGAGGAACTCCCGGTGCGTTTCAAGAGCCAG
CGGGGAGGTCCTGGAAGAATCCCCGAGGAGTCATCTGCGCCAAGACACGA
CAGGTGCTCCTACCGTGGCTGTCAGGCTAGTGGACGCCGCGCGGTGGAAG
CCAATGTGCCCCCCTCGGGGATCGCGTCGGCGGCTTCGACCAACCCGGTC
AAGGTTGCTCTGGCGTCGGCATCCGAAAGGACGGAGAAGTGCCGCGAGTT
GATTGTAGAGGGTTGGCCGGAGGAGCAGCGTTGGGCTTGTGGATCGGAGG
CGTGCATCCTGCACCGCCACTCCTTTCACGGCAGGTGCCTGGTGGTTCAC
ATAGGGAACTCTGCAGTGGCACCGGCAGCGGAAGCAATTACCGATATGGA
TGTCGATCCGGGTGCCGATACCGATGCGAATGCGGGTGTCAATACAACTT
CGTCTGTGGATGCGCCTGCGGATGCTTCTGCGAATACATCTGTGGATGCG
TCTGCGAATACATCTGCCGGTGCACCTGCTGATGCGCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1415:218570..222307+

>mRNA_F-serratus_M_contig1415.3008.1 ID=mRNA_F-serratus_M_contig1415.3008.1|Name=mRNA_F-serratus_M_contig1415.3008.1|organism=Fucus serratus male|type=CDS|length=2898bp|location=Sequence derived from alignment at F-serratus_M_contig1415:218570..222307+ (Fucus serratus male)
TGCAACAGCTGCACAAGCATCGCCGACGACCACAAGATGGTGCTGTGCAA
AGGCGTCGGCTGCGAGGTGCAACAGCTGCACAAGCATCGCCGACGACCAC
AAGATGGTGCTGTGCAAAGGCGTCGGCTGCGAGGGCAAGTATCACTACGA
GTGTCTCCCTGTTCCGCTGGAGGGCGTCCCTGCGGGTCCGTGGTTCTGCC
CCGCCTGCATCGAGGCGCAAAAATCGAACAACGCTGGCGCAGGCTTCCAC
GGGAGAGGCGGAGGTATCACCGTAGGTGATGGGCTTGGCGGCGCTAGAGG
AGGGAGGAGAGCAGGACGAGCAACAGGAGTATCCGCTGAAGGAGTAGTAG
GAGAGGCAGGCGGAGGAGCCGAAGTAGCAGCATTCGAAGGGGAGGAAGGA
CTACGAGGTGCTGGAGAAGGAGCTGCATCTGTAGGAAGGGGAGGAACAGA
AGTAACAACGGTAACAACAGAATCGACAGAAGCAGGCGCAGGGGAAGCTT
CAGGAGAAGGAGTGCTGGCAGCAGGCGATGAAAGAACAGAATCAGAAGAA
GTTTTGTCAGTAGGCGATGGAACGACATCATCAGAAGGAGCAGAGACAGG
GACAGCTCCAACAGGATCAGCAGAAACACCACCAACAACCCTAGGGGAAG
AAGGGGGGAGTTCTGGTTGCGCCAACCCTCGCGACGGGGTGACTCTTTTG
AAGACTTCAGCGCGCTCTCGGCGTGGAGTTCCTTCTAACTACAGGTTCGT
GCCGGAGGATGAGAGGGCGGAGCTCGCCAAGAAATACGGCCGCCCTGACC
CTGGAGATGGTGACGTTGGCGGCGGCGGTAACGCGAGCTGTAGCGAAAGC
AGTTACGTGAGCGGTGGCGACAGCAGTAGCCAAGGCAAGGGCGGGTCGTC
GGATCGCTCTCGACTTCGCGGTAACGGGATGGCGCTCAGATCGTCGCCTG
GATCTTGGCAAGACATTCCTTACCGTTTCGTGGACGGGAACAAGCAGGCA
AGTATCACTACGAGTGTCTCCCTGTTCCGCTGGAGGGCGTCCCTGCGGGT
CCGTGGTTCTGCCCCGCCTGCATCGAGGCGCAAAAATCGAACAACGCTGG
CGCAGGCTTCCACGGGAGAGGCGGAGGTATCACCGTAGGTGATGGGCTTG
GCGGCGCTAGAGGAGGGAGGAGAGCAGGACGAGCAACAGGAGTATCCGCT
GAAGGAGTAGTAGGAGAGGCAGGCGGAGGAGCCGAAGTAGCAGCATTCGA
AGGGGAGGAAGGACTACGAGGTGCTGGAGAAGGAGCTGCATCTGTAGGAA
GGGGAGGAACAGAAGTAACAACGGTAACAACAGAATCGACAGAAGCAGGC
GCAGGGGAAGCTTCAGGAGAAGGAGTGCTGGCAGCAGGCGATGAAAGAAC
AGAATCAGAAGAAGTTTTGTCAGTAGGCGATGGAACGACATCATCAGAAG
GAGCAGAGACAGGGACAGCTCCAACAGGATCAGCAGAAACACCACCAACA
ACCCTAGGGGAAGAAGGGGGGAGTTCTGGTTGCGCCAACCCTCGCGACGG
GGTGACTCTTTTGAAGACTTCAGCGCGCTCTCGGCGTGGAGTTCCTTCTA
ACTACAGGTTCGTGCCGGAGGATGAGAGGGCGGAGCTCGCCAAGAAATAC
GGCCGCCCTGACCCTGGAGATGGTGACGTTGGCGGCGGCGGTAACGCGAG
CTGTAGCGAAAGCAGTTACGTGAGCGGTGGCGACAGCAGTAGCCAAGGCA
AGGGCGGGTCGTCGGATCGCTCTCGACTTCGCGGTAACGGGATGGCGCTC
AGATCGTCGCCTGGATCTTGGCAAGACATTCCTTACCGTTTCGTGGACGG
GAACAAGCAGTATGAGGAACTCCCGGTGCGTTTCAAGAGCCAGCGGGGAG
GTCCTGGAAGAATCCCCGAGGAGTCATCTGCGCCAAGACACGACAGGTGC
TCCTACCGTGGCTGTCAGGCTAGTGGACGCCGCGCGGTGGAAGCCAATGT
GCCCCCCTCGGGGATCGCGTCGGCGGCTTCGACCAACCCGGTCAAGGTTG
CTCTGGCGTCGGCATCCGAAAGGACGGAGAAGTGCCGCGAGTTGATTGTA
GAGGGTTGGCCGGAGGAGCAGCGTTGGGCTTGTGGATCGGAGGCGTGCAT
CCTGCACCGCCACTCCTTTCACGGCAGGTGCCTGGTGGTTCACATAGGGA
ACTCTGCAGTGGCACCGGCAGCGGAAGCAATTACCGATATGGATGTCGAT
CCGGGTGCCGATACCGATGCGAATGCGGGTGTCAATACAACTTCGTCTGT
GGATGCGCCTGCGGATGCTTCTGCGAATACATCTGTGGATGCGTCTGCGA
ATACATCTGCCGGTGCACCTGCTGATGCGTATGAGGAACTCCCGGTGCGT
TTCAAGAGCCAGCGGGGAGGTCCTGGAAGAATCCCCGAGGAGTCATCTGC
GCCAAGACACGACAGGTGCTCCTACCGTGGCTGTCAGGCTAGTGGACGCC
GCGCGGTGGAAGCCAATGTGCCCCCCTCGGGGATCGCGTCGGCGGCTTCG
ACCAACCCGGTCAAGGTTGCTCTGGCGTCGGCATCCGAAAGGACGGAGAA
GTGCCGCGAGTTGATTGTAGAGGGTTGGCCGGAGGAGCAGCGTTGGGCTT
GTGGATCGGAGGCGTGCATCCTGCACCGCCACTCCTTTCACGGCAGGTGC
CTGGTGGTTCACATAGGGAACTCTGCAGTGGCACCGGCAGCGGAAGCAAT
TACCGATATGGATGTCGATCCGGGTGCCGATACCGATGCGAATGCGGGTG
TCAATACAACTTCGTCTGTGGATGCGCCTGCGGATGCTTCTGCGAATACA
TCTGTGGATGCGTCTGCGAATACATCTGCCGGTGCACCTGCTGATGCG
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