mRNA_F-serratus_M_contig1415.3007.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1415.3007.1
Unique NamemRNA_F-serratus_M_contig1415.3007.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1415.3007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1415contigF-serratus_M_contig1415:208526..210257 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPHD-type zinc finger protein
Ec32 orthologEc-25_002640.1
Exons3
Model size383
Cds size381
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1415.3007.1prot_F-serratus_M_contig1415.3007.1Fucus serratus malepolypeptideF-serratus_M_contig1415 208526..210256 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929402.4217932-CDS-F-serratus_M_contig1415:208525..2086291622929402.4217932-CDS-F-serratus_M_contig1415:208525..208629Fucus serratus maleCDSF-serratus_M_contig1415 208526..208629 +
1690962835.1981797-CDS-F-serratus_M_contig1415:208525..2086291690962835.1981797-CDS-F-serratus_M_contig1415:208525..208629Fucus serratus maleCDSF-serratus_M_contig1415 208526..208629 +
1622929402.434633-CDS-F-serratus_M_contig1415:209213..2093391622929402.434633-CDS-F-serratus_M_contig1415:209213..209339Fucus serratus maleCDSF-serratus_M_contig1415 209214..209339 +
1690962835.2091148-CDS-F-serratus_M_contig1415:209213..2093391690962835.2091148-CDS-F-serratus_M_contig1415:209213..209339Fucus serratus maleCDSF-serratus_M_contig1415 209214..209339 +
1622929402.4498992-CDS-F-serratus_M_contig1415:210105..2102561622929402.4498992-CDS-F-serratus_M_contig1415:210105..210256Fucus serratus maleCDSF-serratus_M_contig1415 210106..210256 +
1690962835.218009-CDS-F-serratus_M_contig1415:210105..2102561690962835.218009-CDS-F-serratus_M_contig1415:210105..210256Fucus serratus maleCDSF-serratus_M_contig1415 210106..210256 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1415.3007.1

>prot_F-serratus_M_contig1415.3007.1 ID=prot_F-serratus_M_contig1415.3007.1|Name=mRNA_F-serratus_M_contig1415.3007.1|organism=Fucus serratus male|type=polypeptide|length=127bp
GKGKGKAKLRGGSDQSLLQRPRTKGRPAVIRGVPGESFVCPKKMKGCWRM
EGCGVLNSWDARRCGGCDLRLWEPINGESQLRLGDEITFLEVAFSAKDKG
ETKRERGYISHFSGDGQAAYCTYKFYS
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mRNA from alignment at F-serratus_M_contig1415:208526..210257+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1415.3007.1 ID=mRNA_F-serratus_M_contig1415.3007.1|Name=mRNA_F-serratus_M_contig1415.3007.1|organism=Fucus serratus male|type=mRNA|length=1732bp|location=Sequence derived from alignment at F-serratus_M_contig1415:208526..210257+ (Fucus serratus male)
GGCAAGGGTAAAGGGAAAGCGAAGCTTAGGGGAGGCAGCGATCAGTCGTT
ATTGCAAAGGCCTAGAACCAAGGGAAGGCCGGCCGTCATTCGAGGAGTGC
CGGGGTAAGTCTTGTTATTTCATTTCCTATTCTGAAGAAGTTTTCGGGAG
GGGGAGGGGGGGGAAAGGAGAGAGCGGGGGTGAGTGACTATTATTGAGAG
TGGTACAGTATCTTGTGTGACAAGTGTTGGACGGCCGTTGACCCTGCTGA
TGGTTTCTACGTTTCATTCGGATGTCTTGTCCCGAGTCCCGCTGATGGTT
GTTGTATAACTTTTTTTGACAGGGCAGGCATGGGCGTAGTGTCGCCTTGC
TGAAGGCTTTTTGGGGGAAGGGGGGAGAGGTGCACGAATTTTTTTCGTAC
CGACGATATAAACAACTCCATTATTTGGTGGAGTAAACTATAGTACGTCT
GCTTCTTTTCTGCTCATCAGACACCCATCGCAATCGGAAACTGCAGTTAC
CCCCCCACCAACCCCGCCTTCTCAATGTAGTAAAAAAATCACAAGTAGGA
AATAAACATCTTGATGTTAGAATTATATTTGTCGACGAGGATGTTCTCAA
TACCGCCCTTCAATTTATTATATTTTATATTTCTCTTGAGTTTACTCTTC
TTAATaTAGATCGTCTCTTCCCCCCTGCCCCCACCCAGGGAGTCTTTCGT
GTGCCCCAAGAAGATGAAGGGTTGCTGGAGAATGGAAGGATGCGGGGTGC
TCAATTCATGGGACGCACGGAGGTGTGGAGGCTGCGATTTGAGGCTTTGG
GAGCCGATCAACGGGTGAGCGCGTGAACTGCAGGCATCCCGATGATAAGA
TGCACGCACGTGGACTTATGCCTATCACACACTGTCTGTCGGTGCTCAAG
ATACTGGAGATGAACGGGGACGCCCTCTTCGACTTCTATTTTTTTCTATT
TTTTTTCTCTATACTATTGTACTACCTTTGTACCTTATTGGCCGGCAACT
AGCCACGGGATGCGCGTCCTCGCGGTTCGGACTACTCACTGCTTGTTTGG
GCAGGGGATGTAGAAAAACGTCGGCTATCGTCATGTTGAGAGAGGAATTC
CCTTACTTCGAGTCGTGGCATCGCTGCTGTCGAGAAAGGGTTGGGGTCTC
AGCAGTTGTCCGTCCCCCCATTCCTTTCGCTGATATTAAAATGGAGCTTT
TGGAGTACAAGTTTTTTGTTCCCCGACGTCACTGGTTTAGATTGTGTCGT
GTATGTTTCATATTGCCCCGCCATCAACACGCCTCATCCCCTCCGTAATG
TCCAACTCCCCCGTTTGATTCTCGCCGGAAGTATTTTCTTTACATCATAT
TTTTTTCGTTTTGTTTGTTTTCTAATGGATTGTTGCCGTGCGCGCGGAAG
TTTTCGATTTCGCACGCGGCGGCTATACACCCCTTCGTCGATGTAATGCT
GCATGTCGACGCGATCAGTCAAAAGGCCCACCACAAAAGAGCGTTACAAA
AAACAAAAGACGCTCCGTGAAACGTATGCAATAGAGCATATACAGAACCG
TGCACACGGCGCGCTTGACACCTCGCGCAGAGAGTCTCAGCTACGCCTGG
GCGACGAGATCACCTTCCTGGAGGTGGCGTTCTCGGCGAAGGACAAGGGA
GAAACCAAGCGCGAGAGGGGTTACATTAGCCATTTCAGCGGGGATGGCCA
GGCGGCTTACTGCACTTACAAGTTCTACTCGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1415:208526..210257+

>mRNA_F-serratus_M_contig1415.3007.1 ID=mRNA_F-serratus_M_contig1415.3007.1|Name=mRNA_F-serratus_M_contig1415.3007.1|organism=Fucus serratus male|type=CDS|length=762bp|location=Sequence derived from alignment at F-serratus_M_contig1415:208526..210257+ (Fucus serratus male)
GGCAAGGGTAAAGGGAAAGCGAAGCTTAGGGGAGGCAGCGATCAGTCGTT
ATTGCAAAGGCCTAGAACCAAGGGAAGGCCGGCCGTCATTCGAGGAGTGC
CGGGGGCAAGGGTAAAGGGAAAGCGAAGCTTAGGGGAGGCAGCGATCAGT
CGTTATTGCAAAGGCCTAGAACCAAGGGAAGGCCGGCCGTCATTCGAGGA
GTGCCGGGGGAGTCTTTCGTGTGCCCCAAGAAGATGAAGGGTTGCTGGAG
AATGGAAGGATGCGGGGTGCTCAATTCATGGGACGCACGGAGGTGTGGAG
GCTGCGATTTGAGGCTTTGGGAGCCGATCAACGGGGAGTCTTTCGTGTGC
CCCAAGAAGATGAAGGGTTGCTGGAGAATGGAAGGATGCGGGGTGCTCAA
TTCATGGGACGCACGGAGGTGTGGAGGCTGCGATTTGAGGCTTTGGGAGC
CGATCAACGGAGAGTCTCAGCTACGCCTGGGCGACGAGATCACCTTCCTG
GAGGTGGCGTTCTCGGCGAAGGACAAGGGAGAAACCAAGCGCGAGAGGGG
TTACATTAGCCATTTCAGCGGGGATGGCCAGGCGGCTTACTGCACTTACA
AGTTCTACTCGAGAGTCTCAGCTACGCCTGGGCGACGAGATCACCTTCCT
GGAGGTGGCGTTCTCGGCGAAGGACAAGGGAGAAACCAAGCGCGAGAGGG
GTTACATTAGCCATTTCAGCGGGGATGGCCAGGCGGCTTACTGCACTTAC
AAGTTCTACTCG
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