mRNA_F-serratus_M_contig1415.3006.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1415.3006.1
Unique NamemRNA_F-serratus_M_contig1415.3006.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1415.3006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1415contigF-serratus_M_contig1415:206196..207126 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size569
Cds size567
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929402.3532372-CDS-F-serratus_M_contig1415:206195..2064321622929402.3532372-CDS-F-serratus_M_contig1415:206195..206432Fucus serratus maleCDSF-serratus_M_contig1415 206196..206432 +
1690962835.1813385-CDS-F-serratus_M_contig1415:206195..2064321690962835.1813385-CDS-F-serratus_M_contig1415:206195..206432Fucus serratus maleCDSF-serratus_M_contig1415 206196..206432 +
1622929402.371643-CDS-F-serratus_M_contig1415:206794..2071241622929402.371643-CDS-F-serratus_M_contig1415:206794..207124Fucus serratus maleCDSF-serratus_M_contig1415 206795..207124 +
1690962835.1897435-CDS-F-serratus_M_contig1415:206794..2071241690962835.1897435-CDS-F-serratus_M_contig1415:206794..207124Fucus serratus maleCDSF-serratus_M_contig1415 206795..207124 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1415.3006.1prot_F-serratus_M_contig1415.3006.1Fucus serratus malepolypeptideF-serratus_M_contig1415 206196..207124 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1415.3006.1

>prot_F-serratus_M_contig1415.3006.1 ID=prot_F-serratus_M_contig1415.3006.1|Name=mRNA_F-serratus_M_contig1415.3006.1|organism=Fucus serratus male|type=polypeptide|length=189bp
IDPSLGGKGAIPAGPSSQSESAESGVAATSSSDAAKCGLGEEDEEGSNEI
EVEDGGSCDLFDSVQIMTGKEEKESDTFDATATSVAKGVTIDGGSDPSII
TDNREAHSGTPMETDESGVSRVEKAVKAHVADDTVANDAVADDAVADDAV
EAVAVSLPSEGAGNAIENGEKRDLQQEHSGDGVGKGRNE
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mRNA from alignment at F-serratus_M_contig1415:206196..207126+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1415.3006.1 ID=mRNA_F-serratus_M_contig1415.3006.1|Name=mRNA_F-serratus_M_contig1415.3006.1|organism=Fucus serratus male|type=mRNA|length=931bp|location=Sequence derived from alignment at F-serratus_M_contig1415:206196..207126+ (Fucus serratus male)
ATCGATCCTTCCCTTGGGGGAAAGGGTGCGATTCCTGCGGGCCCTTCATC
GCAGAGCGAGAGTGCCGAGAGCGGCGTCGCCGCGACTTCTAGTAGTGATG
CTGCCAAATGCGGTTTGGGGGAGGAAGACGAAGAAGGTTCAAACGAGATC
GAGGTCGAAGATGGAGGGAGCTGCGACCTGTTCGACAGTGTCCAGATTAT
GACAGGGAAAGAAGAGAAAGAGTCGGACACCTTCGATGTGAGGGCCTTAT
GCATTGTTCCACCAGTAGTTACTTTATACAGAGTGCCTGCGGGTGGTTAG
TTGGTGCTGTTATCTATTCAGCGGTCGAAAAGCCGAGGGAAATTGGCTGA
CGCCACTTTGTCGACTGCGTGGGTCTATAAAAGCGCTTCCGCACCGTAGT
AATCCGTCCGTTTTTTCTATTTAGAGGGCTACAAGGACAGCCATATACTA
TTGATACAGTTGGTGGTATTTGCTGAAGCTTCCTCGTTCAACTTAGTAAA
ACTTCGTCACACGCTCGAAAGGGTGTAGTTATTGTATGCCTAGCGCAAAA
TAGACTGTATGAACCCGTAATTCCCGATCTCTGTTCCCCCTTGCCACAGG
CCACAGCCACTTCGGTGGCCAAAGGCGTCACGATCGACGGTGGGAGTGAC
CCCTCCATAATCACGGATAATCGCGAGGCTCACAGCGGCACACCCATGGA
AACGGACGAGTCCGGAGTTAGTAGAGTCGAGAAGGCGGTAAAAGCGCATG
TCGCGGATGATACCGTCGCGAATGATGCCGTCGCGGATGATGCCGTTGCG
GATGATGCCGTGGAGGCTGTTGCAGTTTCGTTGCCCTCAGAAGGTGCAGG
CAACGCGATCGAGAATGGCGAGAAAAGAGATCTCCAACAGGAGCACAGTG
GTGACGGGGTGGGTAAAGGGCGGAATGAGCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1415:206196..207126+

>mRNA_F-serratus_M_contig1415.3006.1 ID=mRNA_F-serratus_M_contig1415.3006.1|Name=mRNA_F-serratus_M_contig1415.3006.1|organism=Fucus serratus male|type=CDS|length=1134bp|location=Sequence derived from alignment at F-serratus_M_contig1415:206196..207126+ (Fucus serratus male)
ATCGATCCTTCCCTTGGGGGAAAGGGTGCGATTCCTGCGGGCCCTTCATC
GCAGAGCGAGAGTGCCGAGAGCGGCGTCGCCGCGACTTCTAGTAGTGATG
CTGCCAAATGCGGTTTGGGGGAGGAAGACGAAGAAGGTTCAAACGAGATC
GAGGTCGAAGATGGAGGGAGCTGCGACCTGTTCGACAGTGTCCAGATTAT
GACAGGGAAAGAAGAGAAAGAGTCGGACACCTTCGATATCGATCCTTCCC
TTGGGGGAAAGGGTGCGATTCCTGCGGGCCCTTCATCGCAGAGCGAGAGT
GCCGAGAGCGGCGTCGCCGCGACTTCTAGTAGTGATGCTGCCAAATGCGG
TTTGGGGGAGGAAGACGAAGAAGGTTCAAACGAGATCGAGGTCGAAGATG
GAGGGAGCTGCGACCTGTTCGACAGTGTCCAGATTATGACAGGGAAAGAA
GAGAAAGAGTCGGACACCTTCGATGCCACAGCCACTTCGGTGGCCAAAGG
CGTCACGATCGACGGTGGGAGTGACCCCTCCATAATCACGGATAATCGCG
AGGCTCACAGCGGCACACCCATGGAAACGGACGAGTCCGGAGTTAGTAGA
GTCGAGAAGGCGGTAAAAGCGCATGTCGCGGATGATACCGTCGCGAATGA
TGCCGTCGCGGATGATGCCGTTGCGGATGATGCCGTGGAGGCTGTTGCAG
TTTCGTTGCCCTCAGAAGGTGCAGGCAACGCGATCGAGAATGGCGAGAAA
AGAGATCTCCAACAGGAGCACAGTGGTGACGGGGTGGGTAAAGGGCGGAA
TGAGGCCACAGCCACTTCGGTGGCCAAAGGCGTCACGATCGACGGTGGGA
GTGACCCCTCCATAATCACGGATAATCGCGAGGCTCACAGCGGCACACCC
ATGGAAACGGACGAGTCCGGAGTTAGTAGAGTCGAGAAGGCGGTAAAAGC
GCATGTCGCGGATGATACCGTCGCGAATGATGCCGTCGCGGATGATGCCG
TTGCGGATGATGCCGTGGAGGCTGTTGCAGTTTCGTTGCCCTCAGAAGGT
GCAGGCAACGCGATCGAGAATGGCGAGAAAAGAGATCTCCAACAGGAGCA
CAGTGGTGACGGGGTGGGTAAAGGGCGGAATGAG
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