mRNA_F-serratus_M_contig1414.2996.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1414.2996.1
Unique NamemRNA_F-serratus_M_contig1414.2996.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1414.2996.1 vs. uniprot
Match: D8LT08_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT08_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 2.270e-18
Identity = 80/204 (39.22%), Postives = 98/204 (48.04%), Query Frame = 3 
Query:  579 LQCEVGEFAVFPTPSGSTAPFRVGKILEKRLVAQRHLNLSLPSPSTGGGEWTEILVHWFMPKRKTSTRATKTTAAQAGSRSDGDISCGVGGKGRGGTSATTA-AEAASSYAIGGWSPVHL-------LCPTSKRLVRDTGLEDVASAVVVFPRLL-SSDALPPSVRDAVIAGV-------PKK*KGR----GGCGG*TNKAERG 1130
            L C+VGEF VFPTP  S  PF +GK+L KR +A         S   G    TE+ VHW+ PK +         A     R +GD +         GT A    AEA   Y +GGWS   +           ++RL  DTG ED+ASA+VVFP LL S+DA+P  VRDAVI+ V         K  GR    GG G   NK   G
Sbjct:  564 LNCDVGEFVVFPTPRTSPVPFLLGKVLRKRALA---------SGKAGVPSRTEVTVHWYTPKTRPPXXXXXXVA-----RGNGDDA---------GTRARALEAEAVVRYTLGGWSGDFVPAGGXXXXXGATRRLKSDTGEEDLASAMVVFPGLLRSNDAIPAGVRDAVISAVLAATAAEDAKESGRKQPVGGVGHGENKGREG 744
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BLAST of mRNA_F-serratus_M_contig1414.2996.1 vs. uniprot
Match: A0A6H5KIL3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIL3_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.340e-17
Identity = 73/176 (41.48%), Postives = 90/176 (51.14%), Query Frame = 3 
Query:  579 LQCEVGEFAVFPTPSGSTAPFRVGKILEKRLVAQRHLNLSLPSPSTGGGEWTEILVHWFMPKRKTSTRATKTTAAQAGSRSDGDISCGVGGKGRGGTSATTA-AEAASSYAIGGWSPVHLLCPTS----------KRLVRDTGLEDVASAVVVFPRLL-SSDALPPSVRDAVIAGV 1070
            L C+VGEF VFPTP  S  PF +GKIL KR++A         S   G    TE+ VHW+ PK +         A     R +GD +         GT A    AEA + Y  GGWS   +  PT            RL  DTG ED+A+A+VVFP LL S+DA+P  VRDAVI+ V
Sbjct:  653 LNCDVGEFVVFPTPRSSPVPFLLGKILRKRVLA---------SGKAGVPSRTEVTVHWYTPKTRPPXXXXXXVA-----RGNGDDA---------GTRAQALEAEAVARYTSGGWSGDFV--PTCGXXXXXXXXXXRLKSDTGEEDLAAAMVVFPGLLRSNDAMPAGVRDAVISAV 803
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1414.2996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LT08_ECTSI2.270e-1839.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KIL3_9PHAE1.340e-1741.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1414contigF-serratus_M_contig1414:208068..210098 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1656
Cds size1053
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1414.2996.1prot_F-serratus_M_contig1414.2996.1Fucus serratus malepolypeptideF-serratus_M_contig1414 208097..209524 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929402.088243-UTR-F-serratus_M_contig1414:208067..2080961622929402.088243-UTR-F-serratus_M_contig1414:208067..208096Fucus serratus maleUTRF-serratus_M_contig1414 208068..208096 +
1690962835.0316193-UTR-F-serratus_M_contig1414:208067..2080961690962835.0316193-UTR-F-serratus_M_contig1414:208067..208096Fucus serratus maleUTRF-serratus_M_contig1414 208068..208096 +
1622929402.1257193-UTR-F-serratus_M_contig1414:209524..2100981622929402.1257193-UTR-F-serratus_M_contig1414:209524..210098Fucus serratus maleUTRF-serratus_M_contig1414 209525..210098 +
1690962835.064415-UTR-F-serratus_M_contig1414:209524..2100981690962835.064415-UTR-F-serratus_M_contig1414:209524..210098Fucus serratus maleUTRF-serratus_M_contig1414 209525..210098 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929402.1000574-CDS-F-serratus_M_contig1414:208096..2081241622929402.1000574-CDS-F-serratus_M_contig1414:208096..208124Fucus serratus maleCDSF-serratus_M_contig1414 208097..208124 +
1690962835.0420613-CDS-F-serratus_M_contig1414:208096..2081241690962835.0420613-CDS-F-serratus_M_contig1414:208096..208124Fucus serratus maleCDSF-serratus_M_contig1414 208097..208124 +
1622929402.1129467-CDS-F-serratus_M_contig1414:208499..2095241622929402.1129467-CDS-F-serratus_M_contig1414:208499..209524Fucus serratus maleCDSF-serratus_M_contig1414 208500..209524 +
1690962835.054296-CDS-F-serratus_M_contig1414:208499..2095241690962835.054296-CDS-F-serratus_M_contig1414:208499..209524Fucus serratus maleCDSF-serratus_M_contig1414 208500..209524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1414.2996.1

>prot_F-serratus_M_contig1414.2996.1 ID=prot_F-serratus_M_contig1414.2996.1|Name=mRNA_F-serratus_M_contig1414.2996.1|organism=Fucus serratus male|type=polypeptide|length=351bp
MLCPAQNVGDPNGNVAPARQLLGPRDAPKGWSRLVGASSEPTSISGDQEY
GVHDTNRSMPLPGLEVEGAYHDEFSTCSSQWNGRCGIGLEGDEVGGSDSD
ARSLWRSSTESIDENGQEHVIVSRVDPAAVVNRTSCSSKRVEDGDADNGG
RDGGADSTAATVASYRRSIGTSSTGGVKPSREPLQCEVGEFAVFPTPSGS
TAPFRVGKILEKRLVAQRHLNLSLPSPSTGGGEWTEILVHWFMPKRKTST
RATKTTAAQAGSRSDGDISCGVGGKGRGGTSATTAAEAASSYAIGGWSPV
HLLCPTSKRLVRDTGLEDVASAVVVFPRLLSSDALPPSVRDAVIAGVPKK
*
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mRNA from alignment at F-serratus_M_contig1414:208068..210098+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1414.2996.1 ID=mRNA_F-serratus_M_contig1414.2996.1|Name=mRNA_F-serratus_M_contig1414.2996.1|organism=Fucus serratus male|type=mRNA|length=2031bp|location=Sequence derived from alignment at F-serratus_M_contig1414:208068..210098+ (Fucus serratus male)
AAAGCTGGGGGGCGGGAAAGACGGCACTGATGCTGTGCCCCGCGCAAAAT
GTCGGAGGTGATGACCGGGGACGATACCGAAGTTGGTGTGTTTCCCCCCC
CCCCCCCCTTCCCCCTTCCTGCGGCTGGCGCGTAGCTCGTTCTCCTCTTC
ATTTCTGCCCGCGAGACCGATTTTTTTTTTTTTTTTTCACTTGGCAAAAA
AACCCCTGCTTATTCTCAGTTCTTGGTTTCTGTACTGTCATGTCCCGTAA
GTCACAGCGCGCTCTTCGGTGCTGTATATATGTAGTAGTTGTTGAGCAGC
ACACACATCATACTCGTCTCTGGTGCTGTTTGCTTTCTCCCACAACGCAC
GTTATCCCCCCCcaCCCCCCCCCCAACATACTTATTTTTGCGCTGCCCGT
TTTACGACTTTGCAATTCCCGCCACGTGCCAGATCCGAACGGTAACGTTG
CACCGGCGCGACAACTGCTGGGGCCTCGCGACGCGCCGAAGGGGTGGTCG
CGGCTGGTAGGCGCCAGCTCAGAGCCCACCTCTATCTCCGGCGACCAGGA
ATACGGTGTCCACGATACGAATCGTTCAATGCCTCTTCCAGGGCTCGAAG
TCGAAGGGGCCTACCACGACGAATTCTCTACGTGCTCATCACAATGGAAC
GGTCGTTGCGGCATTGGTCTAGAAGGCGACGAAGTCGGCGGAAGTGACAG
CGATGCTCGTTCTCTTTGGCGCTCGAGTACCGAATCGATCGACGAGAACG
GGCAGGAGCACGTCATCGTGTCGAGAGTGGACCCCGCTGCAGTCGTCAAT
CGAACCAGTTGTAGTAGTAAACGCGTCGAAGACGGCGACGCGGACAACGG
CGGCAGGGACGGTGGTGCAGACAGCACCGCCGCCACCGTCGCGAGTTACC
GAAGGAGCATTGGCACCAGCTCCACCGGTGGAGTCAAGCCGTCCCGCGAG
CCGCTGCAGTGCGAGGTGGGCGAGTTTGCCGTGTTCCCAACCCCGTCCGG
CTCGACCGCGCCGTTCCGCGTGGGAAAGATCTTGGAAAAACGCCTCGTTG
CCCAGCGTCACCTCAATCTCAGCCTTCCCTCCCCATCGACGGGCGGTGGT
GAGTGGACGGAGATCCTGGTGCACTGGTTCATGCCCAAGAGAAAGACTTC
TACGAGAGCGACGAAGACGACGGCTGCGCAGGCGGGCAGCAGGAGCGACG
GTGATATTTCCTGCGGGGTTGGCGGGAAAGGTAGAGGTGGAACGTCGGCG
ACAACGGCGGCCGAGGCGGCGTCGAGCTATGCGATCGGCGGCTGGTCCCC
GGTGCACTTGCTGTGTCCAACGAGCAAGCGTTTAGTAAGAGACACAGGAT
TGGAAGACGTGGCGTCGGCGGTGGTGGTGTTCCCGAGGCTGCTCTCCAGC
GACGCCCTGCCGCCAAGCGTCCGCGACGCCGTGATAGCCGGAGTCCCGAA
GAAGTAGAAAGGAAGAGGAGGGTGCGGAGGCTAAACAAACAAGGCGGAAC
GAGGCAGGGATGTTTGCGGATGCTTAGAAGCAGTACAGTAACTCTTTTGT
ACATAGAGCCTATCGACACCTTAATGGTTCAAGCGGCATGTGAATAATAA
GTCTACATCGTAATGGGATCGCCGCCGTCGCTTGAGTCCGTCCGTATATC
TGAATAGGACGGGGCGCGGCAGATTGCCGCACGACAAAGGTTGGATCCCG
TCGGAGTAGCGGGATAGCGTGGACGTTGTCCGGCAGGTTGACACCCGAAC
CTTTTGGCGTCAAGACGGATGGTTTTCCTTTCGAGTGCGTACCGGGTACA
TTAGCTCCTAGGTTTGAAGGTTTTCGGTAAAATCGAGCGCTTCACGTAGA
TTTTCGTACAGTGTTCATAATATTTCGAGGAAGCTGTACGGTATAGAGTT
ATAAGCCGATTCGGTGTTTCCAGTTATATGCATGTATAAACTATACGTTC
GGTCGCTCCGGTAGCTCAGAGGTACCTCGTAACCCTCTGACACGCAGGGA
CGGGAGTTCGATCCCGGCAAACGGGATTTTT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1414:208068..210098+

>mRNA_F-serratus_M_contig1414.2996.1 ID=mRNA_F-serratus_M_contig1414.2996.1|Name=mRNA_F-serratus_M_contig1414.2996.1|organism=Fucus serratus male|type=CDS|length=2106bp|location=Sequence derived from alignment at F-serratus_M_contig1414:208068..210098+ (Fucus serratus male)
ATGCTGTGCCCCGCGCAAAATGTCGGAGATGCTGTGCCCCGCGCAAAATG
TCGGAGATCCGAACGGTAACGTTGCACCGGCGCGACAACTGCTGGGGCCT
CGCGACGCGCCGAAGGGGTGGTCGCGGCTGGTAGGCGCCAGCTCAGAGCC
CACCTCTATCTCCGGCGACCAGGAATACGGTGTCCACGATACGAATCGTT
CAATGCCTCTTCCAGGGCTCGAAGTCGAAGGGGCCTACCACGACGAATTC
TCTACGTGCTCATCACAATGGAACGGTCGTTGCGGCATTGGTCTAGAAGG
CGACGAAGTCGGCGGAAGTGACAGCGATGCTCGTTCTCTTTGGCGCTCGA
GTACCGAATCGATCGACGAGAACGGGCAGGAGCACGTCATCGTGTCGAGA
GTGGACCCCGCTGCAGTCGTCAATCGAACCAGTTGTAGTAGTAAACGCGT
CGAAGACGGCGACGCGGACAACGGCGGCAGGGACGGTGGTGCAGACAGCA
CCGCCGCCACCGTCGCGAGTTACCGAAGGAGCATTGGCACCAGCTCCACC
GGTGGAGTCAAGCCGTCCCGCGAGCCGCTGCAGTGCGAGGTGGGCGAGTT
TGCCGTGTTCCCAACCCCGTCCGGCTCGACCGCGCCGTTCCGCGTGGGAA
AGATCTTGGAAAAACGCCTCGTTGCCCAGCGTCACCTCAATCTCAGCCTT
CCCTCCCCATCGACGGGCGGTGGTGAGTGGACGGAGATCCTGGTGCACTG
GTTCATGCCCAAGAGAAAGACTTCTACGAGAGCGACGAAGACGACGGCTG
CGCAGGCGGGCAGCAGGAGCGACGGTGATATTTCCTGCGGGGTTGGCGGG
AAAGGTAGAGGTGGAACGTCGGCGACAACGGCGGCCGAGGCGGCGTCGAG
CTATGCGATCGGCGGCTGGTCCCCGGTGCACTTGCTGTGTCCAACGAGCA
AGCGTTTAGTAAGAGACACAGGATTGGAAGACGTGGCGTCGGCGGTGGTG
GTGTTCCCGAGGCTGCTCTCCAGCGACGCCCTGCCGCCAAGCGTCCGCGA
CGCCGTGATAGCCGGAGTCCCGAAGAAGTAGATCCGAACGGTAACGTTGC
ACCGGCGCGACAACTGCTGGGGCCTCGCGACGCGCCGAAGGGGTGGTCGC
GGCTGGTAGGCGCCAGCTCAGAGCCCACCTCTATCTCCGGCGACCAGGAA
TACGGTGTCCACGATACGAATCGTTCAATGCCTCTTCCAGGGCTCGAAGT
CGAAGGGGCCTACCACGACGAATTCTCTACGTGCTCATCACAATGGAACG
GTCGTTGCGGCATTGGTCTAGAAGGCGACGAAGTCGGCGGAAGTGACAGC
GATGCTCGTTCTCTTTGGCGCTCGAGTACCGAATCGATCGACGAGAACGG
GCAGGAGCACGTCATCGTGTCGAGAGTGGACCCCGCTGCAGTCGTCAATC
GAACCAGTTGTAGTAGTAAACGCGTCGAAGACGGCGACGCGGACAACGGC
GGCAGGGACGGTGGTGCAGACAGCACCGCCGCCACCGTCGCGAGTTACCG
AAGGAGCATTGGCACCAGCTCCACCGGTGGAGTCAAGCCGTCCCGCGAGC
CGCTGCAGTGCGAGGTGGGCGAGTTTGCCGTGTTCCCAACCCCGTCCGGC
TCGACCGCGCCGTTCCGCGTGGGAAAGATCTTGGAAAAACGCCTCGTTGC
CCAGCGTCACCTCAATCTCAGCCTTCCCTCCCCATCGACGGGCGGTGGTG
AGTGGACGGAGATCCTGGTGCACTGGTTCATGCCCAAGAGAAAGACTTCT
ACGAGAGCGACGAAGACGACGGCTGCGCAGGCGGGCAGCAGGAGCGACGG
TGATATTTCCTGCGGGGTTGGCGGGAAAGGTAGAGGTGGAACGTCGGCGA
CAACGGCGGCCGAGGCGGCGTCGAGCTATGCGATCGGCGGCTGGTCCCCG
GTGCACTTGCTGTGTCCAACGAGCAAGCGTTTAGTAAGAGACACAGGATT
GGAAGACGTGGCGTCGGCGGTGGTGGTGTTCCCGAGGCTGCTCTCCAGCG
ACGCCCTGCCGCCAAGCGTCCGCGACGCCGTGATAGCCGGAGTCCCGAAG
AAGTAG
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