prot_F-serratus_M_contig1414.2991.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_F-serratus_M_contig1414.2991.1
Unique Name	prot_F-serratus_M_contig1414.2991.1
Type	polypeptide
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length	273

Homology

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BLAST of mRNA_F-serratus_M_contig1414.2991.1 vs. uniprot
Match: D8LT06_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT06_ECTSI)

HSP 1 Score: 241 bits (614), Expect = 9.990e-76
Identity = 129/157 (82.17%), Postives = 134/157 (85.35%), Query Frame = 0

Query:  112 PDVEGIPNETLFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHHVGPRRGEPRGFCFVEYSNVDEATKAIRALHGRKLYGRPLRVRYMAVEGASRMDYSTSDSTEQRSSS-SGATLSAGGKIPPPTSAAGEAGIGAGVTKLSLDKKVALLKLKLREA 267
            PDVEGIPNETLFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYH VGPR GEPRGFCFVEYSNVD+A KAIRALHGRKLYGRPLRVR+M VEG  RMDYST+DS    ++S S  T   G KIPP   A GEAG  AGVTKLSLDKKVALLKLKLREA
Sbjct:  118 PDVEGIPNETLFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHKVGPRLGEPRGFCFVEYSNVDDAAKAIRALHGRKLYGRPLRVRFMTVEGKGRMDYSTTDSKGSTATSGSFGTYGDGAKIPPTPGAGGEAGAAAGVTKLSLDKKVALLKLKLREA 274

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BLAST of mRNA_F-serratus_M_contig1414.2991.1 vs. uniprot
Match: A0A803MKS2_CHEQI (RRM domain-containing protein n=4 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803MKS2_CHEQI)

HSP 1 Score: 97.4 bits (241), Expect = 2.540e-21
Identity = 47/92 (51.09%), Postives = 63/92 (68.48%), Query Frame = 0

Query:  110 SLPDVEGIPNET----LFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHHVGPRRGEPRGFCFVEYSNVDEATKAIRALHGRKLYGRPLRVR 197
            S  D+ G+ NET    ++VGN+ +R+SEA ++K+F+PFGK+  E F  H  GP+RGEPRGF FV+YS  +EA  A   +HGR   GRPL VR
Sbjct:    9 SRKDLNGMSNETSDRRIYVGNIDHRISEATLLKMFSPFGKIESEDFLLHTRGPKRGEPRGFAFVQYSTKEEARLAKEKMHGRLACGRPLVVR 100

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BLAST of mRNA_F-serratus_M_contig1414.2991.1 vs. uniprot
Match: A0A565CPV0_9BRAS (RRM domain-containing protein n=1 Tax=Arabis nemorensis TaxID=586526 RepID=A0A565CPV0_9BRAS)

HSP 1 Score: 97.1 bits (240), Expect = 2.670e-21
Identity = 44/103 (42.72%), Postives = 67/103 (65.05%), Query Frame = 0

Query:  111 LPDVEGIPNET----LFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHHVGPRRGEPRGFCFVEYSNVDEATKAIRALHGRKLYGRPLRVRYMAVEGASRMDY 209
            +PD  G  +E     L+VGNL  R++EA ++K+F+P+GK++ E F +H  GP++GEPRG+ FV+YS  +EA  A+  +HGR   GRPL VR+ + +      Y
Sbjct:    1 MPDTGGFVDEKNESRLYVGNLDLRINEAALLKMFSPYGKIISEDFLWHTRGPKKGEPRGYAFVQYSRKEEAEVAVEKMHGRLACGRPLVVRFASEKHLEESSY 103

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BLAST of mRNA_F-serratus_M_contig1414.2991.1 vs. uniprot
Match: A0A169WBX9_DAUCS (RRM domain-containing protein n=3 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A169WBX9_DAUCS)

HSP 1 Score: 97.4 bits (241), Expect = 3.890e-21
Identity = 45/91 (49.45%), Postives = 64/91 (70.33%), Query Frame = 0

Query:  122 LFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHHVGPRRGEPRGFCFVEYSNVDEATKAIRALHGRKLYGRPLRVRYMA----VEGASRMD 208
            L++GNL +R++EA +IK+F+PFG +V E F +H  GP+RGEPRG+ FV+Y  V+EA  A   +HG+ +YGRPL VR  +    V+GA   D
Sbjct:   45 LYIGNLDFRITEAALIKMFSPFGTIVSEDFLWHTRGPKRGEPRGYAFVQYRTVEEAKLAKEKVHGKLVYGRPLVVRLASEKDLVDGAGSSD 135

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BLAST of mRNA_F-serratus_M_contig1414.2991.1 vs. uniprot
Match: A0A7J6EDI8_CANSA (RRM domain-containing protein n=5 Tax=Cannabis sativa TaxID=3483 RepID=A0A7J6EDI8_CANSA)

HSP 1 Score: 97.1 bits (240), Expect = 4.460e-21
Identity = 50/105 (47.62%), Postives = 67/105 (63.81%), Query Frame = 0

Query:  122 LFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHHVGPRRGEPRGFCFVEYSNVDEATKAIRALHGRKLYGRPLRVRYMA----VEGASRMDYSTSDSTEQRSSSS 222
            L++GNL  R++EA +IK+F+PFGK+V E F +H  GP+RGEPRGF FVEYS  +EA  A   +HGR   GRPL V   +    VE A       S++ + R+S S
Sbjct:   35 LYIGNLDLRITEAALIKMFSPFGKIVSEDFIWHTRGPKRGEPRGFAFVEYSTKEEARLAKEKMHGRLACGRPLIVHLASNKYTVESAEHSSKGVSETNKARTSGS 139

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BLAST of mRNA_F-serratus_M_contig1414.2991.1 vs. uniprot
Match: W7TJX2_9STRA (Polyadenylate-binding protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJX2_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 4.810e-21
Identity = 53/114 (46.49%), Postives = 69/114 (60.53%), Query Frame = 0

Query:  101 GAGAAGTGESLP---DVEGIPNETLFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHHVGPRRGEPRGFCFVEYSNVDEATKAIRALHGRKLYGRPLRVRYMAVEGASRMDYST 211
            GAGA   G+  P    + G P   LF+G+L+  V E  ++ LF P+GKVV   F +H  GPR+GEP+GFCFV Y+  +EAT AIRAL  R+L+GR + VRY        MD  T
Sbjct:    8 GAGARNAGKDDPAEDPLAGRPGPKLFIGSLAKSVQEKDVLNLFLPYGKVVDIAFFWHMHGPRKGEPKGFCFVTYARTEEATSAIRALDRRRLHGRSIAVRYQRDADDMNMDART 121

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BLAST of mRNA_F-serratus_M_contig1414.2991.1 vs. uniprot
Match: A0A7N2MIG0_QUELO (RRM domain-containing protein n=8 Tax=Fagaceae TaxID=3503 RepID=A0A7N2MIG0_QUELO)

HSP 1 Score: 96.7 bits (239), Expect = 5.240e-21
Identity = 50/106 (47.17%), Postives = 68/106 (64.15%), Query Frame = 0

Query:  122 LFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHHVGPRRGEPRGFCFVEYSNVDEATKAIRALHGRKLYGRPLRVRYMA----VEGASRMDYSTSDSTEQRSSSSG 223
            L+VGNL  R++EA +IK+F+PFGK+V E F +H  GP+RGEPRGF F++YS  +EA  A   +HG+   GRPL VR  +    VE A ++     DS +   S SG
Sbjct:   16 LYVGNLDLRITEAALIKMFSPFGKIVAEDFLWHTRGPKRGEPRGFAFIQYSTKEEAKLAKEKMHGKLACGRPLVVRLASEKYLVETAEKLSKGVGDSHKTSLSGSG 121

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BLAST of mRNA_F-serratus_M_contig1414.2991.1 vs. uniprot
Match: K8YWR6_NANGC (RRM domain-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YWR6_NANGC)

HSP 1 Score: 96.3 bits (238), Expect = 7.330e-21
Identity = 48/96 (50.00%), Postives = 62/96 (64.58%), Query Frame = 0

Query:  116 GIPNETLFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHHVGPRRGEPRGFCFVEYSNVDEATKAIRALHGRKLYGRPLRVRYMAVEGASRMDYST 211
            G P   LF+G+L+  V E  ++ LF P+GKVV   F +H  GPR+GEP+GFCFV YS  +EAT AIRAL  R+L+GR + VRY      + MD  T
Sbjct:   10 GRPGPKLFIGSLAKSVQEKDVLNLFLPYGKVVDIAFFWHMHGPRKGEPKGFCFVTYSGTEEATSAIRALDRRRLHGRSIAVRYQRDADDTNMDART 105

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BLAST of mRNA_F-serratus_M_contig1414.2991.1 vs. uniprot
Match: A0A7C9DAW6_OPUST (RRM domain-containing protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9DAW6_OPUST)

HSP 1 Score: 95.9 bits (237), Expect = 7.350e-21
Identity = 55/120 (45.83%), Postives = 72/120 (60.00%), Query Frame = 0

Query:  113 DVEGIPNET----LFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHHVGPRRGEPRGFCFVEYSNVDEATKAIRALHGRKLYGRPLRVRYM-------AVEGASRMDYSTSDSTEQRSSS 221
            D+ G+ +E+    L+VGN+ +R+SEA +IK+F+PFGK+  E F  H  GP+RGEPRGF FV+YS   EA  A   +HGR   GRPL VR         A E  S+    T+ ST   SSS
Sbjct:    2 DLNGLSDESSERRLYVGNIDHRISEATLIKMFSPFGKIESEDFLLHTRGPKRGEPRGFAFVQYSTKWEARLAKEKMHGRLACGRPLVVRLASEKSAVEAAENLSKTSVVTNRSTSSSSSS 121

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BLAST of mRNA_F-serratus_M_contig1414.2991.1 vs. uniprot
Match: UPI000C1D519A (probable RNA-binding protein 18 isoform X1 n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D519A)

HSP 1 Score: 95.9 bits (237), Expect = 9.750e-21
Identity = 57/150 (38.00%), Postives = 86/150 (57.33%), Query Frame = 0

Query:  122 LFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHHVGPRRGEPRGFCFVEYSNVDEATKAIRALHGRKLYGRPLRVRYMAVEGASRMDYSTSDSTEQRSSSSGATLSAGGKIPPPTSAAGEAGIGAGVTKLSLDKKVALLKLKLREATEKS 271
            L++GNL  R++EA +IK+F+PFGK+V E F +H+ GP+RGEPRG+ F+++S  +EA  A   +HGR   GRPL VR  + +  S +  ++S +    S SS   LSA G                   ++S   K+A +K KL+   E+S
Sbjct:   15 LYIGNLDLRITEAALIKMFSPFGKIVSEDFLWHNRGPKRGEPRGYAFIQFSTKEEAELAKEKMHGRMACGRPLVVRLASEKYTSEVAANSSKAVGDASRSS---LSASGS-----------------GQISRSAKIAAIKNKLKAMEEES 144

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig1414.2991.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig1414.2991.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LT06_ECTSI	9.990e-76	82.17	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A803MKS2_CHEQI	2.540e-21	51.09	RRM domain-containing protein n=4 Tax=Chenopodium ...	[more]
A0A565CPV0_9BRAS	2.670e-21	42.72	RRM domain-containing protein n=1 Tax=Arabis nemor...	[more]
A0A169WBX9_DAUCS	3.890e-21	49.45	RRM domain-containing protein n=3 Tax=Daucus carot...	[more]
A0A7J6EDI8_CANSA	4.460e-21	47.62	RRM domain-containing protein n=5 Tax=Cannabis sat...	[more]
W7TJX2_9STRA	4.810e-21	46.49	Polyadenylate-binding protein n=1 Tax=Nannochlorop...	[more]
A0A7N2MIG0_QUELO	5.240e-21	47.17	RRM domain-containing protein n=8 Tax=Fagaceae Tax...	[more]
K8YWR6_NANGC	7.330e-21	50.00	RRM domain-containing protein (Fragment) n=1 Tax=N...	[more]
A0A7C9DAW6_OPUST	7.350e-21	45.83	RRM domain-containing protein n=1 Tax=Opuntia stre...	[more]
UPI000C1D519A	9.750e-21	38.00	probable RNA-binding protein 18 isoform X1 n=1 Tax...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 121..197 e-value: 1.0E-4 score: 31.7
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 121..197 e-value: 2.5E-23 score: 93.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 122..195 e-value: 2.1E-17 score: 62.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 120..201 score: 17.728
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 5..211 e-value: 5.9E-25 score: 90.1
None	No IPR available	PANTHER	PTHR21245	FAMILY NOT NAMED	coord: 78..218
None	No IPR available	PANTHER	PTHR21245:SF2	RNA-BINDING PROTEIN 18-RELATED	coord: 78..218
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 106..201

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig1414	contig	F-serratus_M_contig1414:156182..163816 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Fucus serratus MALE	2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-16
OGS1.0 of Fucus serratus male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig1414.2991.1	mRNA_F-serratus_M_contig1414.2991.1	Fucus serratus male	mRNA	F-serratus_M_contig1414 156182..164632 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_F-serratus_M_contig1414.2991.1 ID=prot_F-serratus_M_contig1414.2991.1|Name=mRNA_F-serratus_M_contig1414.2991.1|organism=Fucus serratus male|type=polypeptide|length=273bp
EVVVNTAEHESDVSGRTSNPASRDEEEAELRRRLLEKVHRDRNDAADLKS
GISGTSRSSELSTADLPPAKSRKTGVEDIDDEDASKLSSAGVPSETPKAT
GAGAAGTGESLPDVEGIPNETLFVGNLSYRVSEAVIIKLFTPFGKVVREQ
FCYHHVGPRRGEPRGFCFVEYSNVDEATKAIRALHGRKLYGRPLRVRYMA
VEGASRMDYSTSDSTEQRSSSSGATLSAGGKIPPPTSAAGEAGIGAGVTK
LSLDKKVALLKLKLREATEKST*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003954	RRM_dom_euk
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf