mRNA_F-serratus_M_contig1414.2995.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1414.2995.1
Unique NamemRNA_F-serratus_M_contig1414.2995.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1414.2995.1 vs. uniprot
Match: D8LT08_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT08_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 1.380e-12
Identity = 42/74 (56.76%), Postives = 48/74 (64.86%), Query Frame = 1 
Query:   58 FPESVLSKVPRLVKDLETFVGQPVSVSEAIERCQQLDHGGEGLTQQELCDACVSLILRSDDHIIDGGVASSGLA 279
             PESV++KVPRL+ DLE FVG  V   +A  RC++LD  GEGL QQELCDA VSL LR      D G   SG A
Sbjct:  102 IPESVIAKVPRLLMDLEKFVGYRVFADDAKARCRELDRCGEGLNQQELCDALVSL-LRLQAPSNDAGSGGSGAA 174
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BLAST of mRNA_F-serratus_M_contig1414.2995.1 vs. uniprot
Match: A0A6H5KIL3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIL3_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 1.800e-7
Identity = 31/67 (46.27%), Postives = 43/67 (64.18%), Query Frame = 1 
Query:   28 KKKPQLETKNFPESVLSKVPRLVKDLETFVGQPVSVSEAIERCQQLDHGGEGLTQQELCDACVSLIL 228
            +K+P+  +  FPESV+SKVPRL  DL   +G  V+  +A   C++LD  G+ LT +EL DACV   L
Sbjct:  321 RKRPRRSSGIFPESVISKVPRLALDLSARLGCGVTTEQAKAACRELDRCGDRLTSEELADACVGHFL 387
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1414.2995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LT08_ECTSI1.380e-1256.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KIL3_9PHAE1.800e-746.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1414contigF-serratus_M_contig1414:204955..208045 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size404
Cds size402
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1414.2995.1prot_F-serratus_M_contig1414.2995.1Fucus serratus malepolypeptideF-serratus_M_contig1414 204955..208045 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929401.0185335-CDS-F-serratus_M_contig1414:204954..2050351622929401.0185335-CDS-F-serratus_M_contig1414:204954..205035Fucus serratus maleCDSF-serratus_M_contig1414 204955..205035 +
1690962834.6418803-CDS-F-serratus_M_contig1414:204954..2050351690962834.6418803-CDS-F-serratus_M_contig1414:204954..205035Fucus serratus maleCDSF-serratus_M_contig1414 204955..205035 +
1622929401.0326219-CDS-F-serratus_M_contig1414:205810..2059041622929401.0326219-CDS-F-serratus_M_contig1414:205810..205904Fucus serratus maleCDSF-serratus_M_contig1414 205811..205904 +
1690962834.6505582-CDS-F-serratus_M_contig1414:205810..2059041690962834.6505582-CDS-F-serratus_M_contig1414:205810..205904Fucus serratus maleCDSF-serratus_M_contig1414 205811..205904 +
1622929401.0438128-CDS-F-serratus_M_contig1414:207818..2080451622929401.0438128-CDS-F-serratus_M_contig1414:207818..208045Fucus serratus maleCDSF-serratus_M_contig1414 207819..208045 +
1690962834.6587396-CDS-F-serratus_M_contig1414:207818..2080451690962834.6587396-CDS-F-serratus_M_contig1414:207818..208045Fucus serratus maleCDSF-serratus_M_contig1414 207819..208045 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1414.2995.1

>prot_F-serratus_M_contig1414.2995.1 ID=prot_F-serratus_M_contig1414.2995.1|Name=mRNA_F-serratus_M_contig1414.2995.1|organism=Fucus serratus male|type=polypeptide|length=134bp
ETETVGVPVKKKPQLETKNFPESVLSKVPRLVKDLETFVGQPVSVSEAIE
RCQQLDHGGEGLTQQELCDACVSLILRSDDHIIDGGVASSGLAHDDPDRS
EQPRPLKGGRVLGNVQDRGEFACLAEGARNFLGL
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mRNA from alignment at F-serratus_M_contig1414:204955..208045+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1414.2995.1 ID=mRNA_F-serratus_M_contig1414.2995.1|Name=mRNA_F-serratus_M_contig1414.2995.1|organism=Fucus serratus male|type=mRNA|length=3091bp|location=Sequence derived from alignment at F-serratus_M_contig1414:204955..208045+ (Fucus serratus male)
GAGACGGAGACGGTGGGCGTGCCTGTGAAAAAGAAACCGCAGCTAGAGAC
GAAGAACTTTCCCGAAAGCGTCCTGTCGAAGGCGAGGATAGGATAGGGAC
GCGCTGCTTTTTGCCGTGGTTGTTGTTTTTGGGGGTTTCGTAAGCGTGAG
ACAAAGCGTGGTCGATGGGGTGGGATGACATCCCTATTGACATCTTTGGG
TTGAGAATTTTCGTGAGGTCACGTCGTGGCGTTGAGTTTATTAGCATACC
AATATATAATTATGTATACGAAATGAAAAGGGAAGCGCTCCCACGCTGTT
GCAGTGTTGTCGGGTCCGATGGGGATCGAGCCTTTTGGGGGTGATGACGG
TATAATGGTAGAATGAAGGAAAAAGGCGTGTGTGCGTGTGTGTGTGCAGT
ATATTGCCCTCTTTGTGTTGGCTCGAAAACGCCCGTTTTATGTTTGGTTC
GTGTACGAGACTTGGGCGTCTGTCGGGCAATCCTTTCATGGCAAGAGGGA
GCGGAAGCAGGATACTCGCCTACGTACACTGTACAACTCTGTGCTTGGAA
GGACACTGGCGTTGGAAGGACGCTGACGTTGCATCTCTGGTGCTGTTTTT
TGCTCACTCACCCTATGTCTCGGTACGTGGTACATTATTTGACTTGTGTC
CATCGCAGTCGCTTGCCGATAAGGGGAAACACAAACATGACCCCTCTCAG
GCGAGGCGCGACGACGTGTTGTTGATCTATCTGACTACGTATTATGTCGC
ACCGCGATTTTGCGTGGTCAGGCGTCATCTAGCGCGCCATGTCCTGCCCC
CCCCGCCCTGCATCACATACACTCTGCGGTCTACTCTCTTGTACTGTTAT
TATTAGGTCCCCCGTCTTGTCAAGGATCTGGAGACGTTCGTCGGGCAACC
CGTGTCCGTTTCGGAGGCGATAGAGCGCTGTCAACAGCTGGACCATGGTG
GTGCGCCAATCCAACCATTTTTGTATTCATTTTTTTAAAACGCCTTTTGC
TGAAAAGACTGCCACGCCCGCCCCTGCTCCCGCCATCCCGTTCCTGCAAT
AGTGTTAATAGGGAGCAAGCGGCATGTAGTGTAGTGTACCCTTGTCCTTG
CGTACGACTTACTCCACTCCACTGCATTTTCAATGCTTCGCCATCGAGAT
ACGAAACGTACATCGTCTGTCTTGGTGTACCTAGAAGAAAAAAAAAATAA
CTGGGTTTTGTTTCCTTTTTTGAAAACGAGACGAATATATACGACAATAT
ATATATCAGACAAAATTAGTCCGCGCTTGATCAGAGCTGCCGAAAGTCTT
CCCCAAACCGGCATTTGTTGTGTAGACGTGTTTTGTTTACGTGCGAGTAA
GAGAAAAGAGTAGGAAAAAGTATAAAACAATATGACATCAAGATAAGAGG
GAATAAGAAGAAGAAAAATGTCGGCGTCTTCCTGTAACGTTTCATCCGTT
CCACGTCCTCTCGGCAGCACTTATCTTCACGCCACGTTATTTTTTTCGAA
AATTCTGAACGCATCGAAAACCTTTCGAAGCATCCGCGCACCGTCAGGAC
TAGGTTGTGAAGTGTGTCGAAACATTGGGTCGGAAACATCGGAGGCTGTT
GGCACAAAAACTCTTACGTAGGTGCATGGAGTTTCAGTCGGGTTTCCCCG
TGATCAAGCGCGTATTGTAGAAAAAAAACACCGTTAGACTGTACACTTGA
CACTTACCGCCGTGTAGGAAACACCACAACAGGTGGGAGCGCAAAAGGAA
AACACAAGCTGCAGCAGTATCGGCCCGATCAGTAATAACCGTTAAAAAAC
AGAAATAATTACACATTCGACACGTCTTCTTTTTAGCACAGTGTAGGTGT
GTATGTATTGGTTGTACACTTGACACTTACCGAACACCACAAAAGGTGGG
AGCGCAAAAGGAAAACACAAGCCGCAGTAGTATCGACCCGATCAGTAATA
ACCGTTAAAAAACAGAAATAATTACACATTCGACACGTCTTCTATTATAG
CACAAGTGGATGTACACATTAGACACGTCTTCTTTTTAGCAGTGTAGGTG
TGTATGTATTGGCTGTACACTTGACACTTACCGAACACCACAAAAGGTGG
GAGCGCAAAAGGAAAACACAAGCCGCAGTAGTATCGACCCGATCAGTAAT
AACCGTTAAAAAACAGAAATAATTACACATTCGACACGTCTTCTAATATA
ACACAAGTGGATGTATTAGTTGTACACTTGACACTTACCGTCATGGGAGG
AAACACCACAACAGGTGGGAACGCAAAAGGAAAACACAAGCTACAGTAAT
ATCGGCCCGATCAGTAATAACCGTTAAAAAACAAACAGAAATAATTACAC
ATTCGATACGTCTTACTCGTATATTATAGCACAGTGTATGTATATGTGTA
CGGTCATCACATGTACCAAGGGTAAGGATCAACCGGGTAAGATTGTCAAT
CCTGCTCGAGGTCAGCTGAACAGGAAAAATGAATGTTTCCCTGTCCGCGT
TCGTGCCTGAGAATTTGGTCTCGCGAGACGGGTTCGGCAATCGCGTCCCG
CGTCAGCCTGCTCATCTCCATACTCAGGCTGAATATGGTGCTTACTTACA
GGACTCCTCCCACGTCCCTCGGCGGCATCCATTTCTTTATTATATCTCAA
TGATGCGAAGAAACTGTGAATGATACCGTACGTGAGTAATTACTTACTGT
TGTATTCGTAGAGGACAGTTTACCAGGCGCATGTTGCTGTAGCGTCCGTC
GTTGGAAAGTTCCGCGACAACACTAGTGCCCGCGGTCAATGGCTTCGTGC
GTGAACTTTTGGACACTCCTGAAAGCCCCGCCATTTGTCTGCGCCGTCCG
CTTCCTTCCCTCAGGTGAAGGCTTGACTCAGCAAGAGCTATGCGACGCCT
GTGTGTCTCTGATCCTACGCAGCGACGATCACATCATCGACGGCGGCGTG
GCGAGCAGCGGCCTGGCGCACGACGATCCCGACAGAAGCGAGCAACCGCG
ACCCCTGAAGGGAGGGCGAGTTCTAGGCAACGTCCAAGACAGGGGCGAGT
TCGCGTGCTTGGCGGAGGGGGCACGCAATTTTCTCGGCCTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1414:204955..208045+

>mRNA_F-serratus_M_contig1414.2995.1 ID=mRNA_F-serratus_M_contig1414.2995.1|Name=mRNA_F-serratus_M_contig1414.2995.1|organism=Fucus serratus male|type=CDS|length=804bp|location=Sequence derived from alignment at F-serratus_M_contig1414:204955..208045+ (Fucus serratus male)
GAGACGGAGACGGTGGGCGTGCCTGTGAAAAAGAAACCGCAGCTAGAGAC
GAAGAACTTTCCCGAAAGCGTCCTGTCGAAGGAGACGGAGACGGTGGGCG
TGCCTGTGAAAAAGAAACCGCAGCTAGAGACGAAGAACTTTCCCGAAAGC
GTCCTGTCGAAGGTCCCCCGTCTTGTCAAGGATCTGGAGACGTTCGTCGG
GCAACCCGTGTCCGTTTCGGAGGCGATAGAGCGCTGTCAACAGCTGGACC
ATGGTGGTCCCCCGTCTTGTCAAGGATCTGGAGACGTTCGTCGGGCAACC
CGTGTCCGTTTCGGAGGCGATAGAGCGCTGTCAACAGCTGGACCATGGTG
GTGAAGGCTTGACTCAGCAAGAGCTATGCGACGCCTGTGTGTCTCTGATC
CTACGCAGCGACGATCACATCATCGACGGCGGCGTGGCGAGCAGCGGCCT
GGCGCACGACGATCCCGACAGAAGCGAGCAACCGCGACCCCTGAAGGGAG
GGCGAGTTCTAGGCAACGTCCAAGACAGGGGCGAGTTCGCGTGCTTGGCG
GAGGGGGCACGCAATTTTCTCGGCCTCGTGAAGGCTTGACTCAGCAAGAG
CTATGCGACGCCTGTGTGTCTCTGATCCTACGCAGCGACGATCACATCAT
CGACGGCGGCGTGGCGAGCAGCGGCCTGGCGCACGACGATCCCGACAGAA
GCGAGCAACCGCGACCCCTGAAGGGAGGGCGAGTTCTAGGCAACGTCCAA
GACAGGGGCGAGTTCGCGTGCTTGGCGGAGGGGGCACGCAATTTTCTCGG
CCTC
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