mRNA_F-serratus_M_contig1411.2978.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1411.2978.1
Unique NamemRNA_F-serratus_M_contig1411.2978.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1411.2978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1411contigF-serratus_M_contig1411:94616..96596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.5
Seed ortholog evalue4.3e-07
Seed eggNOG ortholog2880.D7G3Q9
Preferred nameWRN
KEGG koko:K10900,ko:K20777
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113
EggNOG free text desc.3'-5' exonuclease activity
EggNOG OGsKOG4373@1,KOG4373@2759
EC3.1.11.1,3.6.4.12
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03032,ko03400
Exons4
Model size1618
Cds size243
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1411.2978.1prot_F-serratus_M_contig1411.2978.1Fucus serratus malepolypeptideF-serratus_M_contig1411 95212..95602 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929399.1487536-UTR-F-serratus_M_contig1411:94615..949021622929399.1487536-UTR-F-serratus_M_contig1411:94615..94902Fucus serratus maleUTRF-serratus_M_contig1411 94616..94902 +
1690962833.7604067-UTR-F-serratus_M_contig1411:94615..949021690962833.7604067-UTR-F-serratus_M_contig1411:94615..94902Fucus serratus maleUTRF-serratus_M_contig1411 94616..94902 +
1622929399.1602116-UTR-F-serratus_M_contig1411:94936..952111622929399.1602116-UTR-F-serratus_M_contig1411:94936..95211Fucus serratus maleUTRF-serratus_M_contig1411 94937..95211 +
1690962833.771445-UTR-F-serratus_M_contig1411:94936..952111690962833.771445-UTR-F-serratus_M_contig1411:94936..95211Fucus serratus maleUTRF-serratus_M_contig1411 94937..95211 +
1622929399.2273145-UTR-F-serratus_M_contig1411:95602..958441622929399.2273145-UTR-F-serratus_M_contig1411:95602..95844Fucus serratus maleUTRF-serratus_M_contig1411 95603..95844 +
1690962833.8072937-UTR-F-serratus_M_contig1411:95602..958441690962833.8072937-UTR-F-serratus_M_contig1411:95602..95844Fucus serratus maleUTRF-serratus_M_contig1411 95603..95844 +
1622929399.2395768-UTR-F-serratus_M_contig1411:96025..965961622929399.2395768-UTR-F-serratus_M_contig1411:96025..96596Fucus serratus maleUTRF-serratus_M_contig1411 96026..96596 +
1690962833.8196623-UTR-F-serratus_M_contig1411:96025..965961690962833.8196623-UTR-F-serratus_M_contig1411:96025..96596Fucus serratus maleUTRF-serratus_M_contig1411 96026..96596 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929399.1727953-CDS-F-serratus_M_contig1411:95211..953951622929399.1727953-CDS-F-serratus_M_contig1411:95211..95395Fucus serratus maleCDSF-serratus_M_contig1411 95212..95395 +
1690962833.781564-CDS-F-serratus_M_contig1411:95211..953951690962833.781564-CDS-F-serratus_M_contig1411:95211..95395Fucus serratus maleCDSF-serratus_M_contig1411 95212..95395 +
1622929399.190331-CDS-F-serratus_M_contig1411:95543..956021622929399.190331-CDS-F-serratus_M_contig1411:95543..95602Fucus serratus maleCDSF-serratus_M_contig1411 95544..95602 +
1690962833.7965825-CDS-F-serratus_M_contig1411:95543..956021690962833.7965825-CDS-F-serratus_M_contig1411:95543..95602Fucus serratus maleCDSF-serratus_M_contig1411 95544..95602 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1411.2978.1

>prot_F-serratus_M_contig1411.2978.1 ID=prot_F-serratus_M_contig1411.2978.1|Name=mRNA_F-serratus_M_contig1411.2978.1|organism=Fucus serratus male|type=polypeptide|length=81bp
MHVGIGRSRDGLDRTRSFRGTNYVKNFHNVFKDALSSFRTCPSLVHSVML
PFNAQWNLRMAALHLDLDEEMRFFQSVGNR*
back to top

mRNA from alignment at F-serratus_M_contig1411:94616..96596+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1411.2978.1 ID=mRNA_F-serratus_M_contig1411.2978.1|Name=mRNA_F-serratus_M_contig1411.2978.1|organism=Fucus serratus male|type=mRNA|length=1981bp|location=Sequence derived from alignment at F-serratus_M_contig1411:94616..96596+ (Fucus serratus male)
GGCTGGCGACGTAACCTTGTGGGGTGCTGCTGGTGACGCTCAGCCCTGTA
GAGGGAAGCCGCTCATTAAACAAGATCTCTGGCACGTCTTGCATAGAGTG
ATGATTGCTCCGGCGCATGTTGCCCACGGTGGATTCGGGCCATTTTGCCT
TCAGCTTAGCAAATCATTTGCTTTGCCGAACCCAGAGCTTCTCGAGGCAC
TGATGCGGATGGCGCGACTAAGACATCCTGATTAGAGTGAACGAGAAGTA
GCTCAAGCGTTTTACGGGTGATACGCAGCGGCACGGCAGAGATATGTCCC
GACGGTGATTCCACCGCCGGATGAACTTCCCGTGAGGTTCCGACGTGTTG
TGAGGGCGTTCACGGGAGTCAAGGATTAAGCACAGCAAAACCTATCCGAT
TATTGTTCCGCTAGCTCCCTGCATACCCCCTGTTTAGTTTACGTGCGAAG
CCTACCTGCACTTATGTTGTCTGCTTCTCTCCGAAAAATGAACAGACGAA
CCCTTGCTGAATGCACGCGTGGTGGCGGCCATAAGGAAGTTGGTGCCCCA
CATCCGTCGTGGGTGCACCAGCGACCCTAGCCGCAACAGCTGTACCATGC
ACGTTGGTATTGGGCGGAGCAGGGACGGTCTAGACCGGACGCGTTCGTTC
AGAGGGACCAACTACGTGAAGAACTTCCACAATGTTTTCAAGGACGCCTT
GTCAAGCTTCCGCACGTGTCCGAGTTTGGTACATTCGGTCATGTTGCCCT
TCAACGCCCAGTGGAACCTTCGCATGGCAGGTGAGACCTTAGAAATTGGC
GTTTTACAAGCACGTTTTATCCAGGCAGGAGCGCGTATTTTGGTAAGTGC
AGATGGAATAGCTGTTCCACATGTATGTGGATAGTTCAATACATTCACTT
CTGACACCGAACCCTTCGCCGCGTACAGCGCTCCACCTGGATTTGGACGA
GGAAATGCGTTTTTTTCAGTCAGTGGGAAATAGGTGACTTACAGAAGTCG
ACCAAGGACTTTGGGTGAAATCTCTGTCCTTACTCTGGGTGGGTGTTTAC
CAAGGAGTTTGTTGACACCAAGGAGCGCACTGGTCTCTTGACTGCCACCA
GCCAAGGTGGTCTCATTGCGTAGAGCAATATCTAAGATGACGCGCTGTCC
GACGACCTCTTTGACGACGAAGATGCCCCAGACCGCGAAAGCGTGCTGCG
TAGGGTAGTCTTGGGGATGACACAATCCGGCAGGTAGCCTAACACACTGA
TGGGCGCGTGTTTCCTTCAGAAGTATGCGCCGTGTGGTTGTTTACATTTC
TGCTGTCTAAATAGTTGTATTATTTACGACAACGAATTTTCGCATGCTCT
TCCAGCGATTTTCTTTGAAACGAAAAATCTATTTCGTCCCTCTCCTCAAT
ACAAATGCAGGAACCTCTCGCGTATGCAGGGACTACGGTGCGGTGAGCGC
CCCCAAACGCCGGTCGACACTCCGTCGGAAAATACCAGGTTCAAGGCCGA
GGTTTCAAACGGGTTTTGCAGTGGAGGGCGGGGCTCAACAATTGATTGGA
ACGGCTGTGCGGAGAGCTGAAACAACGATGTGAAGAGAATCAAGGGGCAC
TTACGGGACCCCCCCTTCATCCGGCAGCTCCTCTGTACGATTTTATATTC
GCTTGAATATGAAGACTGTTGCTTCTCTGGCGCACTACTGGGTTACATAA
AAGAAAGAACACGAACGTGGCCATGGCCATGGGGCCGCACGCCGACGCTT
TAAAACTCCTTAACAAGCAGAAGAAGATCGAGGTTCGAAAGGTAGATGGC
GGAGCATTCGAGAGCGGTGCCCTTACGTGTTCCACGATGGGCGAGGGGGG
GTGATTAGGTTTCCTACCACCCATCCGACTGCAGATCTTGCTCAACTAAT
GCTTGCGAGTGTCCCGTGCCCCGTGGAGGTTTCAGAGGGTAGGGGACTGA
CAGAGGTCGGAGACAACACAGAAACTTCCGG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1411:94616..96596+

>mRNA_F-serratus_M_contig1411.2978.1 ID=mRNA_F-serratus_M_contig1411.2978.1|Name=mRNA_F-serratus_M_contig1411.2978.1|organism=Fucus serratus male|type=CDS|length=486bp|location=Sequence derived from alignment at F-serratus_M_contig1411:94616..96596+ (Fucus serratus male)
ATGCACGTTGGTATTGGGCGGAGCAGGGACGGTCTAGACCGGACGCGTTC
GTTCAGAGGGACCAACTACGTGAAGAACTTCCACAATGTTTTCAAGGACG
CCTTGTCAAGCTTCCGCACGTGTCCGAGTTTGGTACATTCGGTCATGTTG
CCCTTCAACGCCCAGTGGAACCTTCGCATGGCAGATGCACGTTGGTATTG
GGCGGAGCAGGGACGGTCTAGACCGGACGCGTTCGTTCAGAGGGACCAAC
TACGTGAAGAACTTCCACAATGTTTTCAAGGACGCCTTGTCAAGCTTCCG
CACGTGTCCGAGTTTGGTACATTCGGTCATGTTGCCCTTCAACGCCCAGT
GGAACCTTCGCATGGCAGCGCTCCACCTGGATTTGGACGAGGAAATGCGT
TTTTTTCAGTCAGTGGGAAATAGGTGACGCTCCACCTGGATTTGGACGAG
GAAATGCGTTTTTTTCAGTCAGTGGGAAATAGGTGA
back to top