mRNA_F-serratus_M_contig1411.2974.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1411.2974.1 vs. uniprot
Match: D8LE56_ECTSI (TFIIS-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE56_ECTSI) HSP 1 Score: 235 bits (600), Expect = 8.160e-75 Identity = 122/172 (70.93%), Postives = 133/172 (77.33%), Query Frame = 3
Query: 147 STRDTRQPCSSTPCHEFPLPFPLLTNVLGHRVRLRGCAGLGNTVWQQWQWQN--MADTMRFCSECNNIMYPKENKAERKLMYACSRCSYQEAAESGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRGCGHKWVS 656
+T TRQ S P P P T+ R+ L A V W+ + MADTMRFCSECNNIM+PKENK +RKLMY+C+RC Y+E A+SGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNR CGHKWVS
Sbjct: 76 TTHTTRQVPHSPP------PRPAGTS----RIALLQRASHLYAVLSLWRHRGIKMADTMRFCSECNNIMHPKENKTDRKLMYSCNRCKYEEDAQSGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWVS 237
BLAST of mRNA_F-serratus_M_contig1411.2974.1 vs. uniprot
Match: A0A835YYP5_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYP5_9STRA) HSP 1 Score: 163 bits (413), Expect = 3.060e-48 Identity = 77/113 (68.14%), Postives = 91/113 (80.53%), Query Frame = 3
Query: 315 MRFCSECNNIMYPKENKAERKLMYACSRCSYQEAAESGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRGCGHKWV 653
MRFC ECNNI++PKEN+ R L YAC+RC+Y+E A SCVY NNL+ T KLDIV DVV+DPTLQRSK+ IC++CNY+EAVFFQAD+ AKS SLSLIFVCT+ CG KWV
Sbjct: 1 MRFCKECNNILHPKENRTTRTLFYACNRCAYREEAGQ-SCVYENNLVKTTELKLDIVHEDVVNDPTLQRSKHQICDRCNYSEAVFFQADDSAKSSSLSLIFVCTH--CGKKWV 110
BLAST of mRNA_F-serratus_M_contig1411.2974.1 vs. uniprot
Match: A0A2I4F1N3_JUGRE (DNA-directed RNA polymerase subunit n=38 Tax=Magnoliopsida TaxID=3398 RepID=A0A2I4F1N3_JUGRE) HSP 1 Score: 127 bits (318), Expect = 7.330e-34 Identity = 57/113 (50.44%), Postives = 81/113 (71.68%), Query Frame = 3
Query: 312 TMRFCSECNNIMYPKENKAERKLMYACSRCSYQEAAESGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRGCGHKW 650
TM+FC ECNNI+YPKE+K ++ L+YAC C +QEAA++ +CVYRN + + G + ++Q DV DPTL R+K+ C +CN+ EAVFFQA + + ++L FVC N CGH+W
Sbjct: 3 TMKFCRECNNILYPKEDKEQKILLYACRNCDHQEAADN-NCVYRNEIHHSVGERTQVLQ-DVAADPTLPRTKSVRCAECNHGEAVFFQATARGE-EGMTLFFVCCNPNCGHRW 112
BLAST of mRNA_F-serratus_M_contig1411.2974.1 vs. uniprot
Match: A0A6P5Z8D8_DURZI (DNA-directed RNA polymerase subunit n=2 Tax=Malvaceae TaxID=3629 RepID=A0A6P5Z8D8_DURZI) HSP 1 Score: 126 bits (317), Expect = 1.040e-33 Identity = 58/113 (51.33%), Postives = 79/113 (69.91%), Query Frame = 3
Query: 312 TMRFCSECNNIMYPKENKAERKLMYACSRCSYQEAAESGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRGCGHKW 650
TM+FC ECNNI+YPKE++ ++ L+YAC C +QE AE +CVYRN + +AG + I+Q DV DPTL R+K+ IC C + EAVFFQA + + ++L FVC N CGH+W
Sbjct: 3 TMKFCRECNNILYPKEDREQKILLYACRNCDHQEVAED-NCVYRNEVHHSAGERTQILQ-DVAADPTLPRTKSVICANCKHGEAVFFQATARGE-EGMTLFFVCCNPNCGHRW 112
BLAST of mRNA_F-serratus_M_contig1411.2974.1 vs. uniprot
Match: A0A1Y1IMB2_KLENI (DNA-directed RNA polymerase subunit n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IMB2_KLENI) HSP 1 Score: 126 bits (316), Expect = 1.510e-33 Identity = 60/113 (53.10%), Postives = 76/113 (67.26%), Query Frame = 3
Query: 312 TMRFCSECNNIMYPKENKAERKLMYACSRCSYQEAAESGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRGCGHKW 650
TM+FC ECNNI+YP+ENKAE++L YAC RC + E AE SCVYRN + TA + ++Q DV DPTL RSK C C + EAVFFQA + + ++L FVC N C H+W
Sbjct: 3 TMKFCRECNNILYPRENKAEKRLEYACGRCDFSEDAEQ-SCVYRNEIHHTADERTQVLQ-DVTSDPTLPRSKALRCPVCKHGEAVFFQATSRGE-EGMTLFFVCCNPNCQHRW 112
BLAST of mRNA_F-serratus_M_contig1411.2974.1 vs. uniprot
Match: A0A6P4PU27_GOSAR (DNA-directed RNA polymerase subunit n=7 Tax=Gossypium TaxID=3633 RepID=A0A6P4PU27_GOSAR) HSP 1 Score: 125 bits (315), Expect = 2.070e-33 Identity = 58/113 (51.33%), Postives = 79/113 (69.91%), Query Frame = 3
Query: 312 TMRFCSECNNIMYPKENKAERKLMYACSRCSYQEAAESGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRGCGHKW 650
TM+FC ECNNI+YPKE++ ++ L+YAC C +QE AE+ +CVYRN + +AG + I+Q DV DPTL R+K IC C + EAVFFQA + + ++L FVC N CGH+W
Sbjct: 3 TMKFCRECNNILYPKEDREQKILLYACRNCDHQEVAEN-NCVYRNEVHHSAGERTQILQ-DVAADPTLPRTKAVICANCKHGEAVFFQATARGE-EGMTLFFVCCNPNCGHRW 112
BLAST of mRNA_F-serratus_M_contig1411.2974.1 vs. uniprot
Match: A0A6J1AX74_9ROSI (DNA-directed RNA polymerase subunit n=2 Tax=Malvaceae TaxID=3629 RepID=A0A6J1AX74_9ROSI) HSP 1 Score: 125 bits (315), Expect = 2.070e-33 Identity = 57/113 (50.44%), Postives = 80/113 (70.80%), Query Frame = 3
Query: 312 TMRFCSECNNIMYPKENKAERKLMYACSRCSYQEAAESGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRGCGHKW 650
TM+FC ECNNI+YPKE++ ++ L+YAC C +QE A++ +CVYRN + +AG + I+Q DV DPTL R+K+ IC C + EAVFFQA + + ++L FVC N CGH+W
Sbjct: 3 TMKFCRECNNILYPKEDREQKILLYACRNCDHQEVADN-NCVYRNEVHHSAGERTQILQ-DVAADPTLPRTKSVICANCKHGEAVFFQATARGE-EGMTLFFVCCNPNCGHRW 112
BLAST of mRNA_F-serratus_M_contig1411.2974.1 vs. uniprot
Match: A0A5D2M575_GOSTO (DNA-directed RNA polymerase subunit n=2 Tax=Gossypium TaxID=3633 RepID=A0A5D2M575_GOSTO) HSP 1 Score: 127 bits (319), Expect = 2.090e-33 Identity = 59/117 (50.43%), Postives = 80/117 (68.38%), Query Frame = 3
Query: 300 NMADTMRFCSECNNIMYPKENKAERKLMYACSRCSYQEAAESGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRGCGHKW 650
N TM+FC ECNNI+YPKE++ ++ L+YAC C +QE AE+ +CVYRN + +AG + I+Q DV DPTL R+K IC C + EAVFFQA + + ++L FVC N CGH+W
Sbjct: 46 NKMSTMKFCRECNNILYPKEDREQKILLYACRNCDHQEVAEN-NCVYRNEVHHSAGERTQILQ-DVAADPTLPRTKAVICANCKHGEAVFFQATARGE-EGMTLFFVCCNPNCGHRW 159
BLAST of mRNA_F-serratus_M_contig1411.2974.1 vs. uniprot
Match: A0A5J5WUC6_GOSBA (TFIIS-type domain-containing protein n=3 Tax=Gossypium TaxID=3633 RepID=A0A5J5WUC6_GOSBA) HSP 1 Score: 127 bits (319), Expect = 2.950e-33 Identity = 59/117 (50.43%), Postives = 80/117 (68.38%), Query Frame = 3
Query: 300 NMADTMRFCSECNNIMYPKENKAERKLMYACSRCSYQEAAESGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRGCGHKW 650
N TM+FC ECNNI+YPKE++ ++ L+YAC C +QE AE+ +CVYRN + +AG + I+Q DV DPTL R+K IC C + EAVFFQA + + ++L FVC N CGH+W
Sbjct: 58 NKMSTMKFCRECNNILYPKEDREQKILLYACRNCDHQEVAEN-NCVYRNEVHHSAGERTQILQ-DVAADPTLPRTKAVICANCKHGEAVFFQATARGE-EGMTLFFVCCNPNCGHRW 171
BLAST of mRNA_F-serratus_M_contig1411.2974.1 vs. uniprot
Match: A0A816P1Y2_BRANA (DNA-directed RNA polymerase subunit n=4 Tax=Brassica TaxID=3705 RepID=A0A816P1Y2_BRANA) HSP 1 Score: 125 bits (315), Expect = 3.440e-33 Identity = 59/126 (46.83%), Postives = 85/126 (67.46%), Query Frame = 3
Query: 273 TVWQQWQWQNMADTMRFCSECNNIMYPKENKAERKLMYACSRCSYQEAAESGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRGCGHKW 650
T++ +++ +++ TM+FC ECNNI+YPKE+K ++ L YAC C YQE A++ CV+RN + + K I+ TDV DPTL R+K C KC + EAVFFQA ++ ++L FVC NR CGH+W
Sbjct: 7 TIFNRFRRHDISYTMKFCRECNNILYPKEDKEQKILRYACRNCDYQEIADN-YCVHRNEVHHSVSEKTQIL-TDVASDPTLPRTKAVRCAKCQHREAVFFQATTRSED-GMALFFVCCNRNCGHRW 129 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1411.2974.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1411.2974.1 >prot_F-serratus_M_contig1411.2974.1 ID=prot_F-serratus_M_contig1411.2974.1|Name=mRNA_F-serratus_M_contig1411.2974.1|organism=Fucus serratus male|type=polypeptide|length=119bp MADTMRFCSECNNIMYPKENKAERKLMYACSRCSYQEAAESGSCVYRNNLback to top mRNA from alignment at F-serratus_M_contig1411:46554..48615- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1411.2974.1 ID=mRNA_F-serratus_M_contig1411.2974.1|Name=mRNA_F-serratus_M_contig1411.2974.1|organism=Fucus serratus male|type=mRNA|length=2062bp|location=Sequence derived from alignment at F-serratus_M_contig1411:46554..48615- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1411:46554..48615- >mRNA_F-serratus_M_contig1411.2974.1 ID=mRNA_F-serratus_M_contig1411.2974.1|Name=mRNA_F-serratus_M_contig1411.2974.1|organism=Fucus serratus male|type=CDS|length=714bp|location=Sequence derived from alignment at F-serratus_M_contig1411:46554..48615- (Fucus serratus male)back to top |