mRNA_F-serratus_M_contig1411.2977.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1411.2977.1
Unique NamemRNA_F-serratus_M_contig1411.2977.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1411.2977.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1411contigF-serratus_M_contig1411:93001..93669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size287
Cds size144
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1411.2977.1prot_F-serratus_M_contig1411.2977.1Fucus serratus malepolypeptideF-serratus_M_contig1411 93136..93661 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929396.9492967-UTR-F-serratus_M_contig1411:93000..931351622929396.9492967-UTR-F-serratus_M_contig1411:93000..93135Fucus serratus maleUTRF-serratus_M_contig1411 93001..93135 +
1690962833.2856958-UTR-F-serratus_M_contig1411:93000..931351690962833.2856958-UTR-F-serratus_M_contig1411:93000..93135Fucus serratus maleUTRF-serratus_M_contig1411 93001..93135 +
1622929396.9861264-UTR-F-serratus_M_contig1411:93661..936691622929396.9861264-UTR-F-serratus_M_contig1411:93661..93669Fucus serratus maleUTRF-serratus_M_contig1411 93662..93669 +
1690962833.3128958-UTR-F-serratus_M_contig1411:93661..936691690962833.3128958-UTR-F-serratus_M_contig1411:93661..93669Fucus serratus maleUTRF-serratus_M_contig1411 93662..93669 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929396.9644592-CDS-F-serratus_M_contig1411:93135..932441622929396.9644592-CDS-F-serratus_M_contig1411:93135..93244Fucus serratus maleCDSF-serratus_M_contig1411 93136..93244 +
1690962833.294246-CDS-F-serratus_M_contig1411:93135..932441690962833.294246-CDS-F-serratus_M_contig1411:93135..93244Fucus serratus maleCDSF-serratus_M_contig1411 93136..93244 +
1622929396.973256-CDS-F-serratus_M_contig1411:93626..936611622929396.973256-CDS-F-serratus_M_contig1411:93626..93661Fucus serratus maleCDSF-serratus_M_contig1411 93627..93661 +
1690962833.3031447-CDS-F-serratus_M_contig1411:93626..936611690962833.3031447-CDS-F-serratus_M_contig1411:93626..93661Fucus serratus maleCDSF-serratus_M_contig1411 93627..93661 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1411.2977.1

>prot_F-serratus_M_contig1411.2977.1 ID=prot_F-serratus_M_contig1411.2977.1|Name=mRNA_F-serratus_M_contig1411.2977.1|organism=Fucus serratus male|type=polypeptide|length=48bp
MAASPTVNSMNRARSSSPKLHVLGTLLEDDRLLNCEGWCRCKWGFNY*
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mRNA from alignment at F-serratus_M_contig1411:93001..93669+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1411.2977.1 ID=mRNA_F-serratus_M_contig1411.2977.1|Name=mRNA_F-serratus_M_contig1411.2977.1|organism=Fucus serratus male|type=mRNA|length=669bp|location=Sequence derived from alignment at F-serratus_M_contig1411:93001..93669+ (Fucus serratus male)
AAGCTGTGCTGGTGACAAAGATGGTGGACTCCCCAATTATTACTAGTACT
AACAACACGCGATCGACAAGCCACGAACGACAATGATGTGGCGAACCAGC
CTGCTTTTGCGAGCCTAACTGTACTGGTAACAAAGATGGCGGCCTCCCCA
ACTGTTAATAGTATGAATAGAGCAAGATCTTCTTCCCCAAAGCTTCACGT
ACTAGGTACGTTGCTGGAGGACGACAGGTTGCTGAACTGTGAAGGTAGGA
ACTTCCTATTTTTTTGTGCTTGGTTGCGAGACGTAATGTGCGTGATGGTG
TTTTTTTAATCGTCACTTTCCTGTCTTGTCTTTTATCGCGCGTTGAGTTT
GGCACTCCTGCAGCTCGCCGACGTTACTCGCTGACATGAATTGGATTTAT
TTACTCACGCTCTTGTACGGAATAAGGCAGTATAGAATAACTCTACCTTG
GAACCGAACCCAAGATACCCGCAAACCGAGGCGTTGGTACTAGACTATTG
ATCCGGCCACTCGGGCACAAAGATACTTGTGCCATAACGCTCTTCTTCTC
ATTCGTAAAGTACACCTGCGCCTGCTCGATGACTCTAGGCTCACGCTATT
TTTGTTGTCTTTTGCCTCATTCACAGGTTGGTGTCGGTGTAAATGGGGAT
TTAACTATTAATAAAGCGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1411:93001..93669+

>mRNA_F-serratus_M_contig1411.2977.1 ID=mRNA_F-serratus_M_contig1411.2977.1|Name=mRNA_F-serratus_M_contig1411.2977.1|organism=Fucus serratus male|type=CDS|length=288bp|location=Sequence derived from alignment at F-serratus_M_contig1411:93001..93669+ (Fucus serratus male)
ATGGCGGCCTCCCCAACTGTTAATAGTATGAATAGAGCAAGATCTTCTTC
CCCAAAGCTTCACGTACTAGGTACGTTGCTGGAGGACGACAGGTTGCTGA
ACTGTGAAGATGGCGGCCTCCCCAACTGTTAATAGTATGAATAGAGCAAG
ATCTTCTTCCCCAAAGCTTCACGTACTAGGTACGTTGCTGGAGGACGACA
GGTTGCTGAACTGTGAAGGTTGGTGTCGGTGTAAATGGGGATTTAACTAT
TAAGTTGGTGTCGGTGTAAATGGGGATTTAACTATTAA
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