mRNA_F-serratus_M_contig141.2966.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig141.2966.1
Unique NamemRNA_F-serratus_M_contig141.2966.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig141.2966.1 vs. uniprot
Match: A0A6H5JBZ5_9PHAE (DOMON domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBZ5_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 3.420e-27
Identity = 56/106 (52.83%), Postives = 67/106 (63.21%), Query Frame = 1 
Query:    4 LDALTGALAEGSNMSSSSILGDLLQEVWKDQLYRSMVGDRLYHVHTVQTTDVENHTLHDLINRTVNVTDLPLSVFTTPEITVCYSDCSTTESSTVFLSDEFKLAWD 321
            LDA TGALAEG++ S+  +LGDLL   W DQL RS+ GDR YH+H     +V N TL D+I R  N TDLPLSVF  P ITVC   C+        LSD F+L W+
Sbjct:   97 LDAFTGALAEGTDSSTGGVLGDLLVAAWSDQLTRSIAGDRFYHLHVRNMENVANTTLMDVIGRVTNATDLPLSVFQAPSITVCDGGCAGDGDGVAVLSDNFELEWE 202
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BLAST of mRNA_F-serratus_M_contig141.2966.1 vs. uniprot
Match: D7FQW8_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQW8_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 3.610e-26
Identity = 56/106 (52.83%), Postives = 67/106 (63.21%), Query Frame = 1 
Query:    4 LDALTGALAEGSNMSSSSILGDLLQEVWKDQLYRSMVGDRLYHVHTVQTTDVENHTLHDLINRTVNVTDLPLSVFTTPEITVCYSDCSTTESSTVFLSDEFKLAWD 321
            LDA TGALAEG++ S+  +LGDLL   W DQL RS+ GDR YH+H     +V N TL D+I R  N TDLPLSVF  P ITVC   C+        LSD F+L W+
Sbjct:  364 LDAFTGALAEGTHSSTGGVLGDLLVAAWSDQLTRSIAGDRFYHLHARYMENVANTTLMDVIGRVTNATDLPLSVFQAPSITVCDGGCAGDGDGIAVLSDNFELEWE 469
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig141.2966.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JBZ5_9PHAE3.420e-2752.83DOMON domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FQW8_ECTSI3.610e-2652.83Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig141contigF-serratus_M_contig141:613653..615338 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.7
Seed ortholog evalue2.2e-22
Seed eggNOG ortholog2880.D7FQW8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.peroxidase activity
EggNOG OGsKOG2408@1,KOG2408@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size332
Cds size330
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig141.2966.1prot_F-serratus_M_contig141.2966.1Fucus serratus malepolypeptideF-serratus_M_contig141 613655..615338 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929394.35117-CDS-F-serratus_M_contig141:613654..6136821622929394.35117-CDS-F-serratus_M_contig141:613654..613682Fucus serratus maleCDSF-serratus_M_contig141 613655..613682 -
1690962832.3084295-CDS-F-serratus_M_contig141:613654..6136821690962832.3084295-CDS-F-serratus_M_contig141:613654..613682Fucus serratus maleCDSF-serratus_M_contig141 613655..613682 -
1622929394.3627336-CDS-F-serratus_M_contig141:613940..6139961622929394.3627336-CDS-F-serratus_M_contig141:613940..613996Fucus serratus maleCDSF-serratus_M_contig141 613941..613996 -
1690962832.3202367-CDS-F-serratus_M_contig141:613940..6139961690962832.3202367-CDS-F-serratus_M_contig141:613940..613996Fucus serratus maleCDSF-serratus_M_contig141 613941..613996 -
1622929394.3787007-CDS-F-serratus_M_contig141:614215..6143831622929394.3787007-CDS-F-serratus_M_contig141:614215..614383Fucus serratus maleCDSF-serratus_M_contig141 614216..614383 -
1690962832.3303015-CDS-F-serratus_M_contig141:614215..6143831690962832.3303015-CDS-F-serratus_M_contig141:614215..614383Fucus serratus maleCDSF-serratus_M_contig141 614216..614383 -
1622929394.3924022-CDS-F-serratus_M_contig141:615260..6153381622929394.3924022-CDS-F-serratus_M_contig141:615260..615338Fucus serratus maleCDSF-serratus_M_contig141 615261..615338 -
1690962832.3408859-CDS-F-serratus_M_contig141:615260..6153381690962832.3408859-CDS-F-serratus_M_contig141:615260..615338Fucus serratus maleCDSF-serratus_M_contig141 615261..615338 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig141.2966.1

>prot_F-serratus_M_contig141.2966.1 ID=prot_F-serratus_M_contig141.2966.1|Name=mRNA_F-serratus_M_contig141.2966.1|organism=Fucus serratus male|type=polypeptide|length=110bp
LLDALTGALAEGSNMSSSSILGDLLQEVWKDQLYRSMVGDRLYHVHTVQT
TDVENHTLHDLINRTVNVTDLPLSVFTTPEITVCYSDCSTTESSTVFLSD
EFKLAWDIED
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mRNA from alignment at F-serratus_M_contig141:613653..615338-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig141.2966.1 ID=mRNA_F-serratus_M_contig141.2966.1|Name=mRNA_F-serratus_M_contig141.2966.1|organism=Fucus serratus male|type=mRNA|length=1686bp|location=Sequence derived from alignment at F-serratus_M_contig141:613653..615338- (Fucus serratus male)
CTCCTAGACGCCCTGACCGGCGCCCTTGCGGAAGGGAGCAACATGTCATC
TTCTTCGATACTTGGGGACTTGCTGCAGGTGAGGAGTGAACCCTAGGTGA
CTAGCCAAGACGAGGCTGCGGCGAAGGAGCTTTATTATCAATCCCCTCCC
TCACATGCGGTTAGCCTATCTGCTGTTGGGGTGTGTCCTCGAGGGGCCTT
GGGAGTTTTCCGTGTGAACAGGCCTTGATTGTTTGGGATGTTAACATCAA
ATCGGAAGCGAGAAAACCTTACTCTGCTGCTACCGGTGGCAACTAAATTA
TTTGCCTGTCAGCTGATGACTGTAAAAAGTAGCCCAGTGGTCATAAACTC
GGTAAAAGCTGAAACGGGGGGATCGTACGTCACCGACGTCATATCAAGGT
ACCCATGCCCCGCGCCCTAGTCCGTGCCGGTATCGTCGCTCAGCTTCTTT
ACGTACTGCGTCTCCTGTGCGGCCCACACGTTCGTATGGCGCTCAATTTT
CTTCAGTCATTTTATATCTCTTGAAGCTCACAGGGCGTACGGCCATTGCG
CTGCCTCTCTCGGATAACATTGAAATGTAATCTCGGATTCACTCAGTAAA
GAGGGTCGTAACACTGAGGATCGAACCAAGGTTCAGCTTTTGCAACGTTT
ATAAGCAAACCAGCCAGGTGGTTGTATTTAAATAGTTTGAGCGAAGGGCT
TCACGGAAATCACGCCCCTCCCCTAGCAGGCATCATGGAGGGCGCCAGCT
CACACACGTGGTTCCCGAAGTTCATACCTTGGGCGTTCTTCTACGCTTGT
TCCCTGTCAGTATGAAGGAGATGGCAGCGTGTGTTGCAGTAGGTTTGAGA
AGCGCAGGGGTTTACACGCCGACCAGGAACGCCCCCGAACCCCTCTTTGA
TTCTCCCCCACTGAGCTCCTCGATGTTGCCGCAAACGATCGCACCGCGGT
GACAGGAAGTCTGGAAGGACCAGCTCTACCGTTCCATGGTGGGCGACAGG
CTGTACCACGTGCACACCGTGCAAACCACGGACGTGGAGAATCATACCCT
ACACGATCTCATTAACCGTACCGTGAACGTGACGGATCTGCCCCTCTCCG
TCTTTACGACTCCGGAAATCACGGTACGTTCAGCAGGCGACCCCGAGCAA
TTTGTGGTTCCTTTTGTTTGGCGGAGTTTCATGTTTTCCCGTATGGTAGT
GGGTTGAAGCGCATCGGTATTGAGTTCTGTCTGTTGTCAAAGCTTTTCCT
CTCCTAGTCAACCTACTCTAATCATATTAATAGTACTTCGCGCCTCCGTC
TGCTGGCTTCTTCGTCCACCGCTTCTCACTCGCCACCCGCAGGTGTGCTA
CTCCGACTGCTCGACGACAGAATCCTCCACCGTATTTCTCTCCGACGAGT
GAGCATTCTCCACGCTCGAGCCCAAACAGAGGTCTTTTCTGGCTGATCTC
CTTGACACAAGCCGCGATATGTCGAGCGATGGAGAGTTTCCGGTTTGTGA
AGGATCGGGTAGAGTCGTCGCAACGATTGTGGTGTGAAAAGAAAAAGCGG
GGCAATATTCGTCGGGCTCGCCGCTCGAATCGCTGGGTGGCCCTCATGCC
TCCATCAATGTTCTCCGCCTCTGTACACCACCGACTTTCGTTTTTCGTCG
CTTCAGGTTTAAGCTGGCGTGGGACATCGAGGACGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig141:613653..615338-

>mRNA_F-serratus_M_contig141.2966.1 ID=mRNA_F-serratus_M_contig141.2966.1|Name=mRNA_F-serratus_M_contig141.2966.1|organism=Fucus serratus male|type=CDS|length=660bp|location=Sequence derived from alignment at F-serratus_M_contig141:613653..615338- (Fucus serratus male)
CTCCTAGACGCCCTGACCGGCGCCCTTGCGGAAGGGAGCAACATGTCATC
TTCTTCGATACTTGGGGACTTGCTGCAGCTCCTAGACGCCCTGACCGGCG
CCCTTGCGGAAGGGAGCAACATGTCATCTTCTTCGATACTTGGGGACTTG
CTGCAGGAAGTCTGGAAGGACCAGCTCTACCGTTCCATGGTGGGCGACAG
GCTGTACCACGTGCACACCGTGCAAACCACGGACGTGGAGAATCATACCC
TACACGATCTCATTAACCGTACCGTGAACGTGACGGATCTGCCCCTCTCC
GTCTTTACGACTCCGGAAATCACGGAAGTCTGGAAGGACCAGCTCTACCG
TTCCATGGTGGGCGACAGGCTGTACCACGTGCACACCGTGCAAACCACGG
ACGTGGAGAATCATACCCTACACGATCTCATTAACCGTACCGTGAACGTG
ACGGATCTGCCCCTCTCCGTCTTTACGACTCCGGAAATCACGGTGTGCTA
CTCCGACTGCTCGACGACAGAATCCTCCACCGTATTTCTCTCCGACGAGT
GTGCTACTCCGACTGCTCGACGACAGAATCCTCCACCGTATTTCTCTCCG
ACGAGTTTAAGCTGGCGTGGGACATCGAGGACGTTTAAGCTGGCGTGGGA
CATCGAGGAC
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