mRNA_F-serratus_M_contig141.2960.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig141.2960.1
Unique NamemRNA_F-serratus_M_contig141.2960.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig141.2960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig141contigF-serratus_M_contig141:445326..445770 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size445
Cds size300
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929392.9445593-UTR-F-serratus_M_contig141:445325..4454701622929392.9445593-UTR-F-serratus_M_contig141:445325..445470Fucus serratus maleUTRF-serratus_M_contig141 445326..445470 +
1690962831.527798-UTR-F-serratus_M_contig141:445325..4454701690962831.527798-UTR-F-serratus_M_contig141:445325..445470Fucus serratus maleUTRF-serratus_M_contig141 445326..445470 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929392.9609735-CDS-F-serratus_M_contig141:445470..4457701622929392.9609735-CDS-F-serratus_M_contig141:445470..445770Fucus serratus maleCDSF-serratus_M_contig141 445471..445770 +
1690962831.5368254-CDS-F-serratus_M_contig141:445470..4457701690962831.5368254-CDS-F-serratus_M_contig141:445470..445770Fucus serratus maleCDSF-serratus_M_contig141 445471..445770 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig141.2960.1prot_F-serratus_M_contig141.2960.1Fucus serratus malepolypeptideF-serratus_M_contig141 445471..445770 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig141.2960.1

>prot_F-serratus_M_contig141.2960.1 ID=prot_F-serratus_M_contig141.2960.1|Name=mRNA_F-serratus_M_contig141.2960.1|organism=Fucus serratus male|type=polypeptide|length=100bp
MAHPRQTYRVYNQSIAVVKRSSIHERHYPSRFRHSPQIVASRVKNRAMRR
TTGVLAVKNRLRDYRLLRANYGTVLQYWFLAQLTREKQSGIVQHYNSSV*
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mRNA from alignment at F-serratus_M_contig141:445326..445770+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig141.2960.1 ID=mRNA_F-serratus_M_contig141.2960.1|Name=mRNA_F-serratus_M_contig141.2960.1|organism=Fucus serratus male|type=mRNA|length=445bp|location=Sequence derived from alignment at F-serratus_M_contig141:445326..445770+ (Fucus serratus male)
GTCACAGACAGACTTCGTAAGCAACATAGAGCTATTCAAGTGCTGTAGCG
ACCTTTTGTTCCAGTACAAAACAGTCTAGTGTACTATAGAGCTTTGTGTC
TGCAGTGGAGGTTACAACATTCATGGGCGATATTACGGTAGTCAAATGGC
CCATCCCAGGCAAACCTACAGAGTCTACAATCAGTCTATTGCGGTAGTCA
AGAGGTCGAGCATTCACGAGCGACATTACCCTTCCCGATTCAGACATTCG
CCTCAAATAGTCGCTTCGCGAGTAAAAAACAGGGCTATGCGGCGTACTAC
AGGGGTACTAGCAGTCAAGAACAGGCTTAGAGATTACCGGCTGCTTCGAG
CGAACTATGGTACTGTACTACAGTACTGGTTTTTAGCACAGCTCACGAGA
GAAAAACAATCAGGTATTGTACAGCATTACAACAGTTCAGTTTAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig141:445326..445770+

>mRNA_F-serratus_M_contig141.2960.1 ID=mRNA_F-serratus_M_contig141.2960.1|Name=mRNA_F-serratus_M_contig141.2960.1|organism=Fucus serratus male|type=CDS|length=600bp|location=Sequence derived from alignment at F-serratus_M_contig141:445326..445770+ (Fucus serratus male)
ATGGCCCATCCCAGGCAAACCTACAGAGTCTACAATCAGTCTATTGCGGT
AGTCAAGAGGTCGAGCATTCACGAGCGACATTACCCTTCCCGATTCAGAC
ATTCGCCTCAAATAGTCGCTTCGCGAGTAAAAAACAGGGCTATGCGGCGT
ACTACAGGGGTACTAGCAGTCAAGAACAGGCTTAGAGATTACCGGCTGCT
TCGAGCGAACTATGGTACTGTACTACAGTACTGGTTTTTAGCACAGCTCA
CGAGAGAAAAACAATCAGGTATTGTACAGCATTACAACAGTTCAGTTTAG
ATGGCCCATCCCAGGCAAACCTACAGAGTCTACAATCAGTCTATTGCGGT
AGTCAAGAGGTCGAGCATTCACGAGCGACATTACCCTTCCCGATTCAGAC
ATTCGCCTCAAATAGTCGCTTCGCGAGTAAAAAACAGGGCTATGCGGCGT
ACTACAGGGGTACTAGCAGTCAAGAACAGGCTTAGAGATTACCGGCTGCT
TCGAGCGAACTATGGTACTGTACTACAGTACTGGTTTTTAGCACAGCTCA
CGAGAGAAAAACAATCAGGTATTGTACAGCATTACAACAGTTCAGTTTAG
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