mRNA_F-serratus_M_contig1408.2944.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1408.2944.1
Unique NamemRNA_F-serratus_M_contig1408.2944.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1408.2944.1 vs. uniprot
Match: D6MQM8_9PHAE (Cytochrome c oxidase subunit 1 (Fragment) n=28 Tax=Phaeophyceae TaxID=2870 RepID=D6MQM8_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 7.300e-43
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 1 
Query:    1 ILILPGFGIVSHILGTFSRKPIFGYLGMVYAMLSIGILGFIVWAHHMFTVGLDIDTRAYFTAATMIIAVPTGIEFF 228
            ILILPGFGIVSHIL TFSRKP+FGYLGMVYAMLSIGILGFIVWAHHMFTVGLDIDTRAYFTAATMIIAVPTGI+ F
Sbjct:    8 ILILPGFGIVSHILATFSRKPVFGYLGMVYAMLSIGILGFIVWAHHMFTVGLDIDTRAYFTAATMIIAVPTGIKIF 83
[Close]
BLAST of mRNA_F-serratus_M_contig1408.2944.1 vs. uniprot
Match: A0A060DDA6_9RHOD (Cytochrome c oxidase subunit 1 n=1 Tax=Pyropia fucicola TaxID=144551 RepID=A0A060DDA6_9RHOD)

HSP 1 Score: 141 bits (356), Expect = 6.730e-42
Identity = 66/76 (86.84%), Postives = 74/76 (97.37%), Query Frame = 1 
Query:    1 ILILPGFGIVSHILGTFSRKPIFGYLGMVYAMLSIGILGFIVWAHHMFTVGLDIDTRAYFTAATMIIAVPTGIEFF 228
            +LILPGFGIVSHI+ TFSRKP+FGY+GM+YAMLSIGILGFIVWAHHM+TVGLD+DTRAYFTAATMIIAVPTGI+ F
Sbjct:   16 LLILPGFGIVSHIVSTFSRKPVFGYIGMIYAMLSIGILGFIVWAHHMYTVGLDVDTRAYFTAATMIIAVPTGIKIF 91
[Close]
BLAST of mRNA_F-serratus_M_contig1408.2944.1 vs. uniprot
Match: B7XCR5_CHAMQ (Cytochrome c oxidase subunit 1 (Fragment) n=7 Tax=Chattonella marina TaxID=90936 RepID=B7XCR5_CHAMQ)

HSP 1 Score: 141 bits (356), Expect = 1.780e-41
Identity = 67/76 (88.16%), Postives = 74/76 (97.37%), Query Frame = 1 
Query:    1 ILILPGFGIVSHILGTFSRKPIFGYLGMVYAMLSIGILGFIVWAHHMFTVGLDIDTRAYFTAATMIIAVPTGIEFF 228
            ILILPGFGIVSHI+ TFS+KP+FGYLGMVYAM+SIG+LGFIVWAHHM+TVGLDIDTRAYFTAATMIIAVPTGI+ F
Sbjct:   13 ILILPGFGIVSHIVSTFSKKPVFGYLGMVYAMMSIGVLGFIVWAHHMYTVGLDIDTRAYFTAATMIIAVPTGIKIF 88
[Close]
BLAST of mRNA_F-serratus_M_contig1408.2944.1 vs. uniprot
Match: M1EYI5_9PHAE (Cytochrome c oxidase subunit 1 (Fragment) n=7 Tax=Fucales TaxID=3009 RepID=M1EYI5_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 3.070e-41
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 1 
Query:    1 ILILPGFGIVSHILGTFSRKPIFGYLGMVYAMLSIGILGFIVWAHHMFTVGLDIDTRAYFTAATMIIAVPTGIEFF 228
            ILILPGFGIVSHIL TFSRKP+FGYLGMVYAMLSIGILGFIVWAHHMFTVGLDIDTRAYFTAATMIIAVPTGI+ F
Sbjct:  216 ILILPGFGIVSHILATFSRKPVFGYLGMVYAMLSIGILGFIVWAHHMFTVGLDIDTRAYFTAATMIIAVPTGIKIF 291
[Close]
BLAST of mRNA_F-serratus_M_contig1408.2944.1 vs. uniprot
Match: A0A060IEN7_9PHAE (Cytochrome c oxidase subunit 1 (Fragment) n=1 Tax=Halopteris filicina TaxID=117521 RepID=A0A060IEN7_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 4.300e-41
Identity = 69/76 (90.79%), Postives = 73/76 (96.05%), Query Frame = 1 
Query:    1 ILILPGFGIVSHILGTFSRKPIFGYLGMVYAMLSIGILGFIVWAHHMFTVGLDIDTRAYFTAATMIIAVPTGIEFF 228
            ILILPGFGIVSHIL  +S+KP+FGYLGMVYAMLSIGILGFIVWAHHMFTVGLDIDTRAYFTAATMIIAVPTGI+ F
Sbjct:    8 ILILPGFGIVSHILSHYSKKPVFGYLGMVYAMLSIGILGFIVWAHHMFTVGLDIDTRAYFTAATMIIAVPTGIKIF 83
[Close]
BLAST of mRNA_F-serratus_M_contig1408.2944.1 vs. uniprot
Match: A0A8J5WG91_ZIZPA (Uncharacterized protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5WG91_ZIZPA)

HSP 1 Score: 142 bits (358), Expect = 4.480e-41
Identity = 66/76 (86.84%), Postives = 74/76 (97.37%), Query Frame = 1 
Query:    1 ILILPGFGIVSHILGTFSRKPIFGYLGMVYAMLSIGILGFIVWAHHMFTVGLDIDTRAYFTAATMIIAVPTGIEFF 228
            ILILPGFGI+SHI+ TFSRKP+FGYLGMVYAM+SIG+LGF+VWAHHMFTVGLD+DTRAYFTAATMIIAVPTGI+ F
Sbjct:   41 ILILPGFGIISHIVSTFSRKPVFGYLGMVYAMISIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKIF 116
[Close]
BLAST of mRNA_F-serratus_M_contig1408.2944.1 vs. uniprot
Match: A0A6M3TIB1_9FLOR (Cytochrome c oxidase subunit 1 (Fragment) n=1 Tax=Sebdenia monnardiana TaxID=2651872 RepID=A0A6M3TIB1_9FLOR)

HSP 1 Score: 140 bits (352), Expect = 4.870e-41
Identity = 64/76 (84.21%), Postives = 74/76 (97.37%), Query Frame = 1 
Query:    1 ILILPGFGIVSHILGTFSRKPIFGYLGMVYAMLSIGILGFIVWAHHMFTVGLDIDTRAYFTAATMIIAVPTGIEFF 228
            IL+LPGFG++SHI+ TFSRKP+FGY+GMVYAM+SIGILGFIVWAHHM+TVGLD+DTRAYFTAATMIIAVPTGI+ F
Sbjct:    7 ILVLPGFGMISHIVSTFSRKPVFGYIGMVYAMISIGILGFIVWAHHMYTVGLDVDTRAYFTAATMIIAVPTGIKIF 82
[Close]
BLAST of mRNA_F-serratus_M_contig1408.2944.1 vs. uniprot
Match: A0A7G1K7S9_9PHAE (Cytochrome c oxidase subunit 1 (Fragment) n=2 Tax=Mutimo cylindricus TaxID=1948892 RepID=A0A7G1K7S9_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 5.720e-41
Identity = 68/72 (94.44%), Postives = 71/72 (98.61%), Query Frame = 1 
Query:    1 ILILPGFGIVSHILGTFSRKPIFGYLGMVYAMLSIGILGFIVWAHHMFTVGLDIDTRAYFTAATMIIAVPTG 216
            I+ILPGFGIVSHIL TFSRKP+FGYLGMVYAMLSIGILGFIVWAHHMFTVGLDIDTRAYFT+ATMIIAVPTG
Sbjct:   95 IIILPGFGIVSHILSTFSRKPVFGYLGMVYAMLSIGILGFIVWAHHMFTVGLDIDTRAYFTSATMIIAVPTG 166
[Close]
BLAST of mRNA_F-serratus_M_contig1408.2944.1 vs. uniprot
Match: M1F017_SARFS (Cytochrome c oxidase subunit 1 (Fragment) n=4 Tax=Fucales TaxID=3009 RepID=M1F017_SARFS)

HSP 1 Score: 146 bits (368), Expect = 7.570e-41
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 1 
Query:    1 ILILPGFGIVSHILGTFSRKPIFGYLGMVYAMLSIGILGFIVWAHHMFTVGLDIDTRAYFTAATMIIAVPTGIEFF 228
            ILILPGFGIVSHIL TFSRKP+FGYLGMVYAMLSIGILGFIVWAHHMFTVGLDIDTRAYFTAATMIIAVPTGI+ F
Sbjct:  216 ILILPGFGIVSHILATFSRKPVFGYLGMVYAMLSIGILGFIVWAHHMFTVGLDIDTRAYFTAATMIIAVPTGIKIF 291
[Close]
BLAST of mRNA_F-serratus_M_contig1408.2944.1 vs. uniprot
Match: G4Y942_9SOLA (Cytochrome c oxidase subunit 1 (Fragment) n=1 Tax=Mandragora sp. Kew23330 TaxID=1035553 RepID=G4Y942_9SOLA)

HSP 1 Score: 139 bits (351), Expect = 8.040e-41
Identity = 65/76 (85.53%), Postives = 73/76 (96.05%), Query Frame = 1 
Query:    1 ILILPGFGIVSHILGTFSRKPIFGYLGMVYAMLSIGILGFIVWAHHMFTVGLDIDTRAYFTAATMIIAVPTGIEFF 228
            ILILPGFGI+SHI+ TFS KP+FGYLGMVYAM+SIG+LGF+VWAHHMFTVGLD+DTRAYFTAATMIIAVPTGI+ F
Sbjct:    6 ILILPGFGIISHIVSTFSGKPVFGYLGMVYAMISIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKIF 81
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1408.2944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D6MQM8_9PHAE7.300e-4394.74Cytochrome c oxidase subunit 1 (Fragment) n=28 Tax... [more]
A0A060DDA6_9RHOD6.730e-4286.84Cytochrome c oxidase subunit 1 n=1 Tax=Pyropia fuc... [more]
B7XCR5_CHAMQ1.780e-4188.16Cytochrome c oxidase subunit 1 (Fragment) n=7 Tax=... [more]
M1EYI5_9PHAE3.070e-4194.74Cytochrome c oxidase subunit 1 (Fragment) n=7 Tax=... [more]
A0A060IEN7_9PHAE4.300e-4190.79Cytochrome c oxidase subunit 1 (Fragment) n=1 Tax=... [more]
A0A8J5WG91_ZIZPA4.480e-4186.84Uncharacterized protein n=1 Tax=Zizania palustris ... [more]
A0A6M3TIB1_9FLOR4.870e-4184.21Cytochrome c oxidase subunit 1 (Fragment) n=1 Tax=... [more]
A0A7G1K7S9_9PHAE5.720e-4194.44Cytochrome c oxidase subunit 1 (Fragment) n=2 Tax=... [more]
M1F017_SARFS7.570e-4194.74Cytochrome c oxidase subunit 1 (Fragment) n=4 Tax=... [more]
G4Y942_9SOLA8.040e-4185.53Cytochrome c oxidase subunit 1 (Fragment) n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1408contigF-serratus_M_contig1408:194182..194409 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score142.1
Seed ortholog evalue1.1e-31
Seed eggNOG ortholog70448.Q0P3F1
Preferred namecox1
KEGG koko:K02256
KEGG TC3.D.4.11,3.D.4.7,3.D.4.8
KEGG Pathwayko00190,ko01100,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00154
Hectar predicted targeting categorysignal anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005751,GO:0006091,GO:0006119,GO:0006123,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015672,GO:0015980,GO:0015988,GO:0015990,GO:0016020,GO:0016310,GO:0017144,GO:0019637,GO:0019646,GO:0019693,GO:0019866,GO:0022900,GO:0022904,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0034220,GO:0034641,GO:0042773,GO:0042775,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045277,GO:0045333,GO:0046034,GO:0046483,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0055114,GO:0070069,GO:0070469,GO:0071704,GO:0072521,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902600
EggNOG free text desc.Cytochrome C and Quinol oxidase polypeptide I
EggNOG OGs34JUG@3041,37QZZ@33090,COG0843@1,KOG4769@2759
EC1.9.3.1
COG Functional cat.C
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03029
Exons1
Model size228
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929390.345898-CDS-F-serratus_M_contig1408:194181..1944091622929390.345898-CDS-F-serratus_M_contig1408:194181..194409Fucus serratus maleCDSF-serratus_M_contig1408 194182..194409 +
1690962830.5072298-CDS-F-serratus_M_contig1408:194181..1944091690962830.5072298-CDS-F-serratus_M_contig1408:194181..194409Fucus serratus maleCDSF-serratus_M_contig1408 194182..194409 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1408.2944.1prot_F-serratus_M_contig1408.2944.1Fucus serratus malepolypeptideF-serratus_M_contig1408 194182..194409 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1408.2944.1

>prot_F-serratus_M_contig1408.2944.1 ID=prot_F-serratus_M_contig1408.2944.1|Name=mRNA_F-serratus_M_contig1408.2944.1|organism=Fucus serratus male|type=polypeptide|length=76bp
ILILPGFGIVSHILGTFSRKPIFGYLGMVYAMLSIGILGFIVWAHHMFTV
GLDIDTRAYFTAATMIIAVPTGIEFF
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mRNA from alignment at F-serratus_M_contig1408:194182..194409+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1408.2944.1 ID=mRNA_F-serratus_M_contig1408.2944.1|Name=mRNA_F-serratus_M_contig1408.2944.1|organism=Fucus serratus male|type=mRNA|length=228bp|location=Sequence derived from alignment at F-serratus_M_contig1408:194182..194409+ (Fucus serratus male)
ATTTTAATCTTGCCTGGTTTTGGTATCGTTAGTCACATTTTAGGTACTTT
TTCCAGAAAGCCTATTTTTGGTTATTTGGGGATGGTTTATGCAATGCTTT
CTATTGGTATTCTTGGATTTATCGTGTGGGCTCATCACATGTTTACTGTA
GGATTAGACATAGATACTCGTGCTTATTTTACCGCAGCTACTATGATTAT
TGCAGTTCCAACTGGTATTGAATTTTTT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1408:194182..194409+

>mRNA_F-serratus_M_contig1408.2944.1 ID=mRNA_F-serratus_M_contig1408.2944.1|Name=mRNA_F-serratus_M_contig1408.2944.1|organism=Fucus serratus male|type=CDS|length=456bp|location=Sequence derived from alignment at F-serratus_M_contig1408:194182..194409+ (Fucus serratus male)
ATTTTAATCTTGCCTGGTTTTGGTATCGTTAGTCACATTTTAGGTACTTT
TTCCAGAAAGCCTATTTTTGGTTATTTGGGGATGGTTTATGCAATGCTTT
CTATTGGTATTCTTGGATTTATCGTGTGGGCTCATCACATGTTTACTGTA
GGATTAGACATAGATACTCGTGCTTATTTTACCGCAGCTACTATGATTAT
TGCAGTTCCAACTGGTATTGAATTTTTTATTTTAATCTTGCCTGGTTTTG
GTATCGTTAGTCACATTTTAGGTACTTTTTCCAGAAAGCCTATTTTTGGT
TATTTGGGGATGGTTTATGCAATGCTTTCTATTGGTATTCTTGGATTTAT
CGTGTGGGCTCATCACATGTTTACTGTAGGATTAGACATAGATACTCGTG
CTTATTTTACCGCAGCTACTATGATTATTGCAGTTCCAACTGGTATTGAA
TTTTTT
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