prot_F-serratus_M_contig1408.2937.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig1408.2937.1
Unique Nameprot_F-serratus_M_contig1408.2937.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length234
Homology
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BLAST of mRNA_F-serratus_M_contig1408.2937.1 vs. uniprot
Match: D8LNJ2_ECTSI (Hlip n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNJ2_ECTSI)

HSP 1 Score: 205 bits (521), Expect = 7.680e-63
Identity = 127/242 (52.48%), Postives = 157/242 (64.88%), Query Frame = 0 
Query:    1 MRLSAGVTVGVGWISVVDVSSFAFAPLQAPPSSANVARVTTHGQALVR-----QRVRPRGLAAISMSAVEDELWRGEPWDEADE-ASSQVMTKPKKR--SELDDIMSEVAGRGN-EPVIVPRSAGIGPLPPGRIKADPIPGMDADDVPGKIQVDIDTLVKQQKDLEKVARVLRRERLVLERDEGRFFGWTITAEKWNGRSAMVGVAAGLFIEAVTGSSFPQQIEGIAQTLGLLPLDYETYFQ 233
            MRLSA V +GVG +SVV VSSFAF PL A PS       T H            RVRP G   +++SA + E       + AD+  SS V TKPK++   ELDD++SE+AGR + EP+++PR AGI P+ PG IK DPIPGMD DD+PGKI +  + L +QQK LEK+A+ LRRERL  E ++   FG+   AE WNGRSAM G+  G+  E  TG S PQQIE  AQ LGLLPLDY+TYFQ
Sbjct:    1 MRLSASVALGVGCVSVVQVSSFAFVPLGATPSGCT--SCTAHSSQATSGSGSSSRVRP-GRLLVALSAADGEGGSDSGEETADDDTSSAVATKPKRKVNPELDDLVSEMAGRSDDEPIVIPRGAGIAPMAPGPIKPDPIPGMDDDDIPGKIVLPPEVLAEQQKGLEKIAQQLRRERLDKEAEDAITFGFCPRAELWNGRSAMFGITVGMLTEYWTGQSIPQQIETFAQLLGLLPLDYDTYFQ 239
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1408.2937.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNJ2_ECTSI7.680e-6352.48Hlip n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNJ2_EC... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 146..166
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..233
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 175..214

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1408contigF-serratus_M_contig1408:37422..43872 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1408.2937.1mRNA_F-serratus_M_contig1408.2937.1Fucus serratus malemRNAF-serratus_M_contig1408 37345..44970 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig1408.2937.1 ID=prot_F-serratus_M_contig1408.2937.1|Name=mRNA_F-serratus_M_contig1408.2937.1|organism=Fucus serratus male|type=polypeptide|length=234bp
MRLSAGVTVGVGWISVVDVSSFAFAPLQAPPSSANVARVTTHGQALVRQR
VRPRGLAAISMSAVEDELWRGEPWDEADEASSQVMTKPKKRSELDDIMSE
VAGRGNEPVIVPRSAGIGPLPPGRIKADPIPGMDADDVPGKIQVDIDTLV
KQQKDLEKVARVLRRERLVLERDEGRFFGWTITAEKWNGRSAMVGVAAGL
FIEAVTGSSFPQQIEGIAQTLGLLPLDYETYFQ*
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