mRNA_F-serratus_M_contig1408.2938.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1408.2938.1
Unique NamemRNA_F-serratus_M_contig1408.2938.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1408.2938.1 vs. uniprot
Match: A0A6H5JNZ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNZ6_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 4.750e-22
Identity = 76/185 (41.08%), Postives = 98/185 (52.97%), Query Frame = 3 
Query:  531 LHNHDGLTTSSPSSLPAEGISSKPTESVKRSVA-----------------LPPSFESFCGEKGGTDEESVPMGGFTLTRRGTPRLVR---GLSRDGGHIEEVLGNGKQEPFTVPGSMFMGHPVGSKAAEFLERHERRVQDVRAKTEEVAKLMKLVMDHDPASSGSPLPDVDKIFPVNRSDQLRRG 1025
            +  H G+TT S      EG S   +++ K +V                  L    E F GE  G  EE V   G T  RRGT R VR   G+S   G   E     K+ PF VP +M+MGHPVGS AAEFLER + R+ DV+ + EEVA L+KLV+DH+P ++GS  PD+DK+FP  R     +G
Sbjct:  197 MDKHSGMTTFSLMRQDEEGSSLDASDAGKAAVRGEQEDGQYNKGDGAVEILAQEQEGFDGE--GESEEPV---GTTFARRGTRRFVRQGTGISMADGVSPEGKKK-KKAPFHVPPTMYMGHPVGSMAAEFLERQKHRLVDVKNRREEVAGLLKLVVDHNPRNTGSDAPDIDKVFPDKRGRDNSQG 375
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1408.2938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JNZ6_9PHAE4.750e-2241.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1408contigF-serratus_M_contig1408:45044..46413 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1112
Cds size753
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1408.2938.1prot_F-serratus_M_contig1408.2938.1Fucus serratus malepolypeptideF-serratus_M_contig1408 45119..46129 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929389.3476143-UTR-F-serratus_M_contig1408:45043..451181622929389.3476143-UTR-F-serratus_M_contig1408:45043..45118Fucus serratus maleUTRF-serratus_M_contig1408 45044..45118 -
1690962829.8174903-UTR-F-serratus_M_contig1408:45043..451181690962829.8174903-UTR-F-serratus_M_contig1408:45043..45118Fucus serratus maleUTRF-serratus_M_contig1408 45044..45118 -
1622929389.403084-UTR-F-serratus_M_contig1408:46129..464131622929389.403084-UTR-F-serratus_M_contig1408:46129..46413Fucus serratus maleUTRF-serratus_M_contig1408 46130..46413 -
1690962829.8461323-UTR-F-serratus_M_contig1408:46129..464131690962829.8461323-UTR-F-serratus_M_contig1408:46129..46413Fucus serratus maleUTRF-serratus_M_contig1408 46130..46413 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929389.3671603-CDS-F-serratus_M_contig1408:45118..456961622929389.3671603-CDS-F-serratus_M_contig1408:45118..45696Fucus serratus maleCDSF-serratus_M_contig1408 45119..45696 -
1690962829.8269954-CDS-F-serratus_M_contig1408:45118..456961690962829.8269954-CDS-F-serratus_M_contig1408:45118..45696Fucus serratus maleCDSF-serratus_M_contig1408 45119..45696 -
1622929389.3842008-CDS-F-serratus_M_contig1408:45954..461291622929389.3842008-CDS-F-serratus_M_contig1408:45954..46129Fucus serratus maleCDSF-serratus_M_contig1408 45955..46129 -
1690962829.8358903-CDS-F-serratus_M_contig1408:45954..461291690962829.8358903-CDS-F-serratus_M_contig1408:45954..46129Fucus serratus maleCDSF-serratus_M_contig1408 45955..46129 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1408.2938.1

>prot_F-serratus_M_contig1408.2938.1 ID=prot_F-serratus_M_contig1408.2938.1|Name=mRNA_F-serratus_M_contig1408.2938.1|organism=Fucus serratus male|type=polypeptide|length=251bp
MLAVVDRTNQQGHRLRGDLDPSDAHFVGDNDRRRPETEGNYQIAQVEASD
TPSRKQSLSPHHYSATEGETIAAMVDPSKGSGLHNHDGLTTSSPSSLPAE
GISSKPTESVKRSVALPPSFESFCGEKGGTDEESVPMGGFTLTRRGTPRL
VRGLSRDGGHIEEVLGNGKQEPFTVPGSMFMGHPVGSKAAEFLERHERRV
QDVRAKTEEVAKLMKLVMDHDPASSGSPLPDVDKIFPVNRSDQLRRGVGV
*
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mRNA from alignment at F-serratus_M_contig1408:45044..46413-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1408.2938.1 ID=mRNA_F-serratus_M_contig1408.2938.1|Name=mRNA_F-serratus_M_contig1408.2938.1|organism=Fucus serratus male|type=mRNA|length=1370bp|location=Sequence derived from alignment at F-serratus_M_contig1408:45044..46413- (Fucus serratus male)
CGCCGGGTGTTGATTTAAAACACTCGGGAGTAGCACCTGGTAGTACTGTT
GTGGTCATCCAGTCGTGGAGGCTGCCGGGACGCAGAGGACGCTTGCTTAT
ACGTAAGACTTTCACGCTGCACAGAATATATCGTATTACGCACAAGGTGT
GCGCCCACCATGGTCAAAGTCCTACCAACAGAAGAAGGATATTCTTCGGC
TACAACAGAGAGGACTCCTTACGAGGTCGAAGAGGAAAATGTAGTGTCTC
GAGGTGGAAAAAAGTCCATGACGATGACAATGATATGCTTGCAGTGGTCG
ACAGAACGAACCAGCAAGGACATCGACTAAGGGGGGATTTGGACCCTTCG
GACGCTCATTTTGTAGGAGACAATGATAGGCGACGACCGGAAACTGAGGG
AAATTATCAAATAGCACAGGTGGAGGCTTCAGATACTCCATCCAGGAAGC
AGAGTTTGAGTGAGCGAACAGTCCTAGTGAAGCCTGAAGATGAAGTCATG
TCGCTTGATTCTGAAGATGAAAATATCTTGATGGCAAGTCCCAAGCCAGC
TAGCTGAGTTGCCTGACAGGAAACTATTAATAGTGGATGGTGCCTTGTAC
GTTGCATGTTTTCCCCTTCCGGATGGTGTCTTTTTCTACCTTGTGACCAT
GGACCGGATTTTTTACATCAGCTTATTTGAGAAAAATTCAATTCAAAATT
CAATTCAATTTCAATAGGTCCCCATCATTATTCAGCGACTGAGGGCGAAA
CAATTGCGGCTATGGTGGATCCCTCCAAGGGATCCGGTCTCCACAACCAC
GACGGATTGACCACCTCTTCGCCATCCTCTCTTCCCGCCGAGGGCATTTC
GTCAAAGCCGACAGAGAGCGTGAAGAGATCTGTAGCGTTGCCCCCTTCAT
TTGAATCTTTCTGCGGCGAGAAAGGGGGCACAGACGAAGAGTCGGTGCCA
ATGGGAGGTTTCACGCTTACGCGGCGTGGCACACCAAGACTGGTCCGAGG
TTTGTCTCGCGATGGAGGCCATATCGAAGAAGTTCTGGGCAATGGCAAGC
AGGAACCTTTCACGGTTCCGGGGTCTATGTTCATGGGGCACCCCGTTGGG
AGCAAAGCGGCCGAGTTTCTCGAGCGACACGAGCGTCGAGTACAAGACGT
CAGAGCTAAGACGGAGGAAGTCGCCAAATTGATGAAGCTGGTAATGGATC
ACGACCCAGCGAGCAGTGGATCGCCTCTGCCTGATGTTGACAAGATTTTC
CCGGTAAACCGCTCTGATCAGCTCCGGCGAGGCGTTGGGGTATGACCACA
CACCATGTCGCCGATCAACACCACGCAAGGGAGGCAATGGGCGAGGAAAG
TAGGGGAAACTAAATGAGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1408:45044..46413-

>mRNA_F-serratus_M_contig1408.2938.1 ID=mRNA_F-serratus_M_contig1408.2938.1|Name=mRNA_F-serratus_M_contig1408.2938.1|organism=Fucus serratus male|type=CDS|length=1506bp|location=Sequence derived from alignment at F-serratus_M_contig1408:45044..46413- (Fucus serratus male)
ATGCTTGCAGTGGTCGACAGAACGAACCAGCAAGGACATCGACTAAGGGG
GGATTTGGACCCTTCGGACGCTCATTTTGTAGGAGACAATGATAGGCGAC
GACCGGAAACTGAGGGAAATTATCAAATAGCACAGGTGGAGGCTTCAGAT
ACTCCATCCAGGAAGCAGAGTTTGAATGCTTGCAGTGGTCGACAGAACGA
ACCAGCAAGGACATCGACTAAGGGGGGATTTGGACCCTTCGGACGCTCAT
TTTGTAGGAGACAATGATAGGCGACGACCGGAAACTGAGGGAAATTATCA
AATAGCACAGGTGGAGGCTTCAGATACTCCATCCAGGAAGCAGAGTTTGA
GTCCCCATCATTATTCAGCGACTGAGGGCGAAACAATTGCGGCTATGGTG
GATCCCTCCAAGGGATCCGGTCTCCACAACCACGACGGATTGACCACCTC
TTCGCCATCCTCTCTTCCCGCCGAGGGCATTTCGTCAAAGCCGACAGAGA
GCGTGAAGAGATCTGTAGCGTTGCCCCCTTCATTTGAATCTTTCTGCGGC
GAGAAAGGGGGCACAGACGAAGAGTCGGTGCCAATGGGAGGTTTCACGCT
TACGCGGCGTGGCACACCAAGACTGGTCCGAGGTTTGTCTCGCGATGGAG
GCCATATCGAAGAAGTTCTGGGCAATGGCAAGCAGGAACCTTTCACGGTT
CCGGGGTCTATGTTCATGGGGCACCCCGTTGGGAGCAAAGCGGCCGAGTT
TCTCGAGCGACACGAGCGTCGAGTACAAGACGTCAGAGCTAAGACGGAGG
AAGTCGCCAAATTGATGAAGCTGGTAATGGATCACGACCCAGCGAGCAGT
GGATCGCCTCTGCCTGATGTTGACAAGATTTTCCCGGTAAACCGCTCTGA
TCAGCTCCGGCGAGGCGTTGGGGTATGAGTCCCCATCATTATTCAGCGAC
TGAGGGCGAAACAATTGCGGCTATGGTGGATCCCTCCAAGGGATCCGGTC
TCCACAACCACGACGGATTGACCACCTCTTCGCCATCCTCTCTTCCCGCC
GAGGGCATTTCGTCAAAGCCGACAGAGAGCGTGAAGAGATCTGTAGCGTT
GCCCCCTTCATTTGAATCTTTCTGCGGCGAGAAAGGGGGCACAGACGAAG
AGTCGGTGCCAATGGGAGGTTTCACGCTTACGCGGCGTGGCACACCAAGA
CTGGTCCGAGGTTTGTCTCGCGATGGAGGCCATATCGAAGAAGTTCTGGG
CAATGGCAAGCAGGAACCTTTCACGGTTCCGGGGTCTATGTTCATGGGGC
ACCCCGTTGGGAGCAAAGCGGCCGAGTTTCTCGAGCGACACGAGCGTCGA
GTACAAGACGTCAGAGCTAAGACGGAGGAAGTCGCCAAATTGATGAAGCT
GGTAATGGATCACGACCCAGCGAGCAGTGGATCGCCTCTGCCTGATGTTG
ACAAGATTTTCCCGGTAAACCGCTCTGATCAGCTCCGGCGAGGCGTTGGG
GTATGA
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