mRNA_F-serratus_M_contig1407.2935.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1407.2935.1
Unique NamemRNA_F-serratus_M_contig1407.2935.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1407.2935.1 vs. uniprot
Match: A0A6H5KKT0_9PHAE (PPM-type phosphatase domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKT0_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 8.010e-28
Identity = 67/119 (56.30%), Postives = 86/119 (72.27%), Query Frame = 3 
Query:    3 GGAEVAKYCSAHICKVLKDSPGFKQSNYGQGLK*TFLRMDELLRSPGGQAELLKLKEEDSSSKGADSDSDH-EGGGNSDVLSKIDRETQKEIMERMRKAMSEKFLSQGVELGVSDLGEG 356
            GGAEVAKYCSAHIC V+K +  FK+ N+G GLK TFL+MD++LR+P GQAELL LK+   +S+G DSDSD  E   +  +LSKI  ETQ +IME+M++AM ++F S G      DL EG
Sbjct:   72 GGAEVAKYCSAHICDVVKGTEAFKEGNFGLGLKQTFLKMDDMLRTPAGQAELLALKK---ASQGEDSDSDDGEDVVDMGMLSKIKPETQLQIMEQMKRAMRDQFQSAG------DLAEG 181
[Close]
BLAST of mRNA_F-serratus_M_contig1407.2935.1 vs. uniprot
Match: J9INI8_9SPIT (Metallopeptidase family M24 containing protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9INI8_9SPIT)

HSP 1 Score: 59.3 bits (142), Expect = 5.350e-7
Identity = 24/56 (42.86%), Postives = 42/56 (75.00%), Query Frame = 3 
Query:    3 GGAEVAKYCSAHICKVLKDSPGFKQSNYGQGLK*TFLRMDELLRSPGGQAELLKLK 170
            GG EVA++CS ++ +VL+    +K  NY   L+ TFL++DE+L++PGG+ +LL+++
Sbjct:   63 GGIEVAEFCSKNLEEVLQQQQNYKMKNYDLALQDTFLKIDEILQTPGGKRQLLQIQ 118
[Close]
BLAST of mRNA_F-serratus_M_contig1407.2935.1 vs. uniprot
Match: A0A1R2AMV5_9CILI (PPM-type phosphatase domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2AMV5_9CILI)

HSP 1 Score: 55.1 bits (131), Expect = 1.430e-5
Identity = 24/55 (43.64%), Postives = 37/55 (67.27%), Query Frame = 3 
Query:    3 GGAEVAKYCSAHICKVLKDSPGFKQSNYGQGLK*TFLRMDELLRSPGGQAELLKL 167
            GG EVA++ S H C  +  +  FK+ N+ Q LK TFL+MD+LLR+  G  E++++
Sbjct:   60 GGKEVAEFVSRHFCIEIVTTRAFKEGNFEQALKDTFLKMDDLLRTTEGLKEVIRI 114
[Close]
BLAST of mRNA_F-serratus_M_contig1407.2935.1 vs. uniprot
Match: A0A1R2BJZ0_9CILI (PPM-type phosphatase domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BJZ0_9CILI)

HSP 1 Score: 55.1 bits (131), Expect = 1.430e-5
Identity = 24/55 (43.64%), Postives = 37/55 (67.27%), Query Frame = 3 
Query:    3 GGAEVAKYCSAHICKVLKDSPGFKQSNYGQGLK*TFLRMDELLRSPGGQAELLKL 167
            GG EVA++ S HIC  +  S  +K  NY Q LK +FL+MD+LL++  G  E++++
Sbjct:   60 GGKEVAEFVSRHICLEIISSRAYKDGNYVQALKESFLKMDDLLKTTDGLKEVIRI 114
[Close]
BLAST of mRNA_F-serratus_M_contig1407.2935.1 vs. uniprot
Match: A0A1R2D4Q3_9CILI (PPM-type phosphatase domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2D4Q3_9CILI)

HSP 1 Score: 55.1 bits (131), Expect = 1.430e-5
Identity = 24/55 (43.64%), Postives = 36/55 (65.45%), Query Frame = 3 
Query:    3 GGAEVAKYCSAHICKVLKDSPGFKQSNYGQGLK*TFLRMDELLRSPGGQAELLKL 167
            GG EVA++ S H C  +     FK+ N+ Q LK TFLRMDEL+++  G  E++++
Sbjct:   60 GGKEVAEFVSRHFCAEIVTLRSFKEGNFEQALKDTFLRMDELIKTTEGLKEVIRI 114
[Close]
BLAST of mRNA_F-serratus_M_contig1407.2935.1 vs. uniprot
Match: A0A0V0Q889_PSEPJ (Protein phosphatase 2C (PP2C)-like domain n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0Q889_PSEPJ)

HSP 1 Score: 54.7 bits (130), Expect = 1.880e-5
Identity = 25/56 (44.64%), Postives = 35/56 (62.50%), Query Frame = 3 
Query:    3 GGAEVAKYCSAHICKVLKDSPGFKQSNYGQGLK*TFLRMDELLRSPGGQAELLKLK 170
            GG EVAK+   +  + LK +  F+  N+   L   F+RMDE+L +P GQ ELLK+K
Sbjct:   60 GGKEVAKFVEKYFIEELKKNKNFQAKNFKDALYENFIRMDEMLETPEGQEELLKIK 115
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1407.2935.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KKT0_9PHAE8.010e-2856.30PPM-type phosphatase domain-containing protein (Fr... [more]
J9INI8_9SPIT5.350e-742.86Metallopeptidase family M24 containing protein n=1... [more]
A0A1R2AMV5_9CILI1.430e-543.64PPM-type phosphatase domain-containing protein n=1... [more]
A0A1R2BJZ0_9CILI1.430e-543.64PPM-type phosphatase domain-containing protein n=1... [more]
A0A1R2D4Q3_9CILI1.430e-543.64PPM-type phosphatase domain-containing protein n=1... [more]
A0A0V0Q889_PSEPJ1.880e-544.64Protein phosphatase 2C (PP2C)-like domain n=1 Tax=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1407contigF-serratus_M_contig1407:170257..182002 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size608
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1407.2935.1prot_F-serratus_M_contig1407.2935.1Fucus serratus malepolypeptideF-serratus_M_contig1407 170449..181886 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929389.1911035-UTR-F-serratus_M_contig1407:170256..1704481622929389.1911035-UTR-F-serratus_M_contig1407:170256..170448Fucus serratus maleUTRF-serratus_M_contig1407 170257..170448 -
1690962829.7587748-UTR-F-serratus_M_contig1407:170256..1704481690962829.7587748-UTR-F-serratus_M_contig1407:170256..170448Fucus serratus maleUTRF-serratus_M_contig1407 170257..170448 -
1622929389.267411-UTR-F-serratus_M_contig1407:181886..1820021622929389.267411-UTR-F-serratus_M_contig1407:181886..182002Fucus serratus maleUTRF-serratus_M_contig1407 181887..182002 -
1690962829.8101163-UTR-F-serratus_M_contig1407:181886..1820021690962829.8101163-UTR-F-serratus_M_contig1407:181886..182002Fucus serratus maleUTRF-serratus_M_contig1407 181887..182002 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929389.2111309-CDS-F-serratus_M_contig1407:170448..1705631622929389.2111309-CDS-F-serratus_M_contig1407:170448..170563Fucus serratus maleCDSF-serratus_M_contig1407 170449..170563 -
1690962829.7726583-CDS-F-serratus_M_contig1407:170448..1705631690962829.7726583-CDS-F-serratus_M_contig1407:170448..170563Fucus serratus maleCDSF-serratus_M_contig1407 170449..170563 -
1622929389.224397-CDS-F-serratus_M_contig1407:171037..1711161622929389.224397-CDS-F-serratus_M_contig1407:171037..171116Fucus serratus maleCDSF-serratus_M_contig1407 171038..171116 -
1690962829.7803433-CDS-F-serratus_M_contig1407:171037..1711161690962829.7803433-CDS-F-serratus_M_contig1407:171037..171116Fucus serratus maleCDSF-serratus_M_contig1407 171038..171116 -
1622929389.2361057-CDS-F-serratus_M_contig1407:172597..1726701622929389.2361057-CDS-F-serratus_M_contig1407:172597..172670Fucus serratus maleCDSF-serratus_M_contig1407 172598..172670 -
1690962829.7916179-CDS-F-serratus_M_contig1407:172597..1726701690962829.7916179-CDS-F-serratus_M_contig1407:172597..172670Fucus serratus maleCDSF-serratus_M_contig1407 172598..172670 -
1622929389.2502873-CDS-F-serratus_M_contig1407:181853..1818861622929389.2502873-CDS-F-serratus_M_contig1407:181853..181886Fucus serratus maleCDSF-serratus_M_contig1407 181854..181886 -
1690962829.8030932-CDS-F-serratus_M_contig1407:181853..1818861690962829.8030932-CDS-F-serratus_M_contig1407:181853..181886Fucus serratus maleCDSF-serratus_M_contig1407 181854..181886 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1407.2935.1

>prot_F-serratus_M_contig1407.2935.1 ID=prot_F-serratus_M_contig1407.2935.1|Name=mRNA_F-serratus_M_contig1407.2935.1|organism=Fucus serratus male|type=polypeptide|length=100bp
MDELLRSPGGQAELLKLKEEDSSSKGADSDSDHEGGGNSDVLSKIDRETQ
KEIMERMRKAMSEKFLSQGVELGVSDLGEGTADKESEDDDDDYEDSSGS*
back to top

mRNA from alignment at F-serratus_M_contig1407:170257..182002-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1407.2935.1 ID=mRNA_F-serratus_M_contig1407.2935.1|Name=mRNA_F-serratus_M_contig1407.2935.1|organism=Fucus serratus male|type=mRNA|length=11746bp|location=Sequence derived from alignment at F-serratus_M_contig1407:170257..182002- (Fucus serratus male)
AGGGTGGGGCTGAAGTGGCTAAGTACTGCTCGGCTCACATCTGCAAGGTG
CTGAAAGACTCTCCCGGCTTCAAACAAAGTAACTACGGGCAAGGCCTTAA
GTAAACGTTTCTTCGGATGGACGAACTGCTACGGTCCCCGGGTGGTCAGG
TGGGTTTCTTGATGATTCAGGCGTTTTTATCGGTCGGGGATCTTTCAAAT
GGGGCACGCAGGGAATGCTCCTTGTTTCTTGTTTCTTGTCCCTTGAAAGG
GTTTTGTAGAGAGAGTGGGGACGATTCGTTGTTTTTTTCAGGTTCAAATA
TTTTCACCCTCGTGGGGAGACGCGATATATATATTGTTGCTGTTTGAAGA
AAAATCTGAATGCACCTAGACCTTCTGATGCTGTTGTTGGATTAAGCGTG
TACTTGTCACCGTTTGTTGAAGACATATACCGGGCTACAGCTAGAGAAGT
GTACTGGCACGCTTGGTCCAACGTCTGTGACGTTTTCTCCCTCACGGAGA
CACAGCAGTGCCTAGAAAGCTATTAATAGCTGCCCATGGTTAACCTTGTA
TGGTCATATACTGTGAGGAAATATGGTATATCCTACCCCTTTGAAGAGAA
TGTACTTCAAATGGTGTACCTCAAGGTTTATCATAACCACGGGGGTTTCC
AGGTTATTAAGGCGTGACTGATTGCTTTTTTTTTTGTCTGAAGAGTCTAA
TGTACCTGTACCTTTGATATGGGTTTACCGGATAGGGGGGGGGTTGACTC
GAGCGCTCTGCCCTACAATGGTTTTAGAAGACGGATGCAACGCGTTTACT
AATAATGTTCATGTTAGGTCTACATGTACCGTAGATCTATCGTAGATCTA
TCGTAGATATATCTCTTCAATGTCAGCGTGTGCTGCGATGTGGAAAATCG
TCGTTCACGAGATGGTTGGCGTACAGTGTTATGAAATACTACATCACGAA
CCTTAGACCTTAGATCTCTTCGCGCTCCTTCGTATGTGGATTGCAACTGC
TGCTGTAGACAGAGTGTGGTACAGAGTGTGGTGTCGGAAAACGAAAAAAG
TTAGTGAAGGGGCGATGAGGCTAAGAGGCTTATACGTTGACAAATGACTT
GAAATAAGGTATGTTCCAACGTTTATTCTGTGCAACTAAAAATCAAGCTA
GACTATATGATGTACAGTACAGTACTGCTGCTGTTGCCACTTTTGGCTAG
ACTCTTTCATAGGCATAATAGGCATGTTTCCGACATGTGCACCATTTTCA
AGACGTAAACAACCTTGAATACTATAATAGTGAGCAGAGCAGAGCAGTAG
TATCTGAACAGACGGGGAAGCGAGTATCCCGAATTTTGGACGAGCTTAAG
CTTACTGGCTCAAGGCTCGAGTACTTGATAGTTCTTGATAGTTCTTGAGC
TCGAACGTTCCCGATGCTAAAATATTAATGAAACACCTGGTAGAGCTTGT
ACGAGTACCGATGGTGTTATCATTAGTACCTGGTAGGTGTGGTAAAAGAG
AGGCGCGCATTAAATGGTTGATGGGGTTTATATAATAAAATAGAATAGGC
AGCACCCGTTACTCGAGCTACCTTTGAGGTCTTCCAGCCGTGTGGCGGCC
GACTCTCGGCAGCGAACGCCATCGGCATGCAACTCCGTGGCCTGATAAAC
TATAATATAATATAATATTATACTATTAATAGAGACTTACGCGGTGGCGG
TTGACAGTGTAGATTGACGCAGTCGCGGAAAGCGGGAGAAATCGCTTGAA
TAAGCACCAGGTTCGGCCCGGGTGTGGAGAATGAGCGGGGTTGGCGCAGG
GCGGGACAGTCACACCCTTCTTGCGAGACCAAATTCTCAGGAGCAAACGT
GGAAAGGGAAAAAAACACTTTGCCTGTTGAGCTGAGCACAAGCAGAGGAT
TGACAACCTTGTCCGGTTGGTCCATACTTTGCTACAGTATATGTGATTAT
CATAGAATTTTAAAGAAACGACATTTCTCGCCGCTGCCTCCTCTTGGCGA
ATGCTATTAATAATATCAATGCCCCGAAGATGTCCGTCCCGCCGGGGTAG
AGCGGTAGAGCGATAATTAGTAGAGCTAGCCGTTGGACGAGCATGTACAC
GACTGCCTTCACGCAGCTTTGTCCCCAATGTTCTCTACCTAACAGTCGTC
CCGTCCCTCTGTGCTCAAACGGTGGGTGTAGGGCTGTTTGTTGTACCAGC
GGACTCTAATGCTGTCGGCGGCGAACGCCCTCGATACGCGATTGCGTGAT
GTGATAAACTGGGGGCTTGAATCGATGACTGTGGATGGTGTATATAGAGG
ATGGTATGGGTGGATACCGTCGCGCAGAACATGATGAAGAAGAGCCCGTG
AGTAAGCAGTGTAATTAGCCTGGCTGTGGACAATGAGCGGACTGACGCTG
GACGAGACAGGCGAATCTGTCTCCCGCGAGACCAAATTCTCAGGCGCATA
CAAAGACGAAAGGGCACGACGGGAAAAATAATTTTCCCTGGATAGCTGGC
GACCCAGGATTGCCAATCAAATTCCTTATACGATTGGTAAACCAGTCAGC
TGACCGTGAAGGCCACTATCAATTATTAGTAGCATGCGGTGTCGGAATGC
CCTACACGATACGTATTACGCATGTCCTCTTTCTCAGGTACTGTACGTTG
AAGTCTTAGGCAATAGTCTAGAGCGGCAAAATATTGACATGGAAATGGCC
GACATCCACCATATTATACTTCAGAATGAAGAGTCATCTTCAACCATTGC
GGTGATGGAAATATTATTTTTTTTCCAACGTCAGTGCAATCTGGGACGAA
GGGAAAAATAGAGGGGTTTTTCTCCCGGGTGGGCATGCTCTCGGGGCACT
GATGTAGTTTTGGCAATGTCTTGAGGCGCCAAGGCGCTCTCTGTGGAACA
CAAACAACTATCGAGAACACGAGGAACAAAGTTGGGAGCTGAGTTGGTGA
CCTACCTGGGTGATGATATCTTCAACAAGCGCTGGAACAAAGAACGTTTC
GGGAAAACCTGGCGGCGTGCCTGGCGCGATCCCGATTGGATGTTAGGTAT
ACAGTAGTACAGTATACGGCTGACGCGGGACGGGTCTGCCGAACTCGTCT
CGCGAGACCAAATTCTCAGCGCGAACGGGGGCAGGGAAATATCAATTTTC
CTTGTTCGGCTGACCACGAGCAGGATTAGCATGCTATATGTGATGACCAT
ACATAAGAGTACATTATCCGCTGTACTGTGACTGTAGAGCTAATAACTTG
GCTTTAGTTTGATTTGATTGGCGAACTCCCGAATGAATTTTTTCATGGCA
ACATATATGGAGAACCGACCACCTTAGCAGTACCGGTACATGTACCATAC
CACGTCACCCCGCGGAGACAAAACTTCCCGACGATGTAGGCATGACATCG
TTTCTTCGTCGAACTACACATAATGTTTCGCACCTAGAGACAAGTGTGTG
TGTGTTGCCTATCGCTGTCGCTCCACTGTTTTTTAAACACTTTCGTCACG
TTGGGTACAACATGCTGCATGTTTTAATATATCATAGTAATAGAGAGCCT
AAGACAGCAGTACCTGGTATGGTAGTTCATACACTACCTGGTATGGTAGT
TCATACAATACCTGGTATATAATGTTTGTCAAGCACGCCTTGCCGTAAAA
GTCGACGTCTTGACTTTGAGGTGAATGGATGAAATTAGTAGTGTACTGTA
GTGTGCTGTACCTTCACTGCCATTTATTCTCTAGTGTGCCGTACAGACAG
AAGCTGCTCTGCTTCTTTGATTGCAATATATTTGTAGGCTAGCTCCTGTT
CCATGAAATAATCATAGTATACTGTGTATTGCAATAGCTACTCGATTCTA
ACACATAGACTAAGACATACACGTCCGAATATAGAAAAGTAATACCAGGT
ATGCTGTATTATATTGTTATTAAGAATAGAACGGAACAGCCCCTCCCAAA
TACACACATAAAAATATACACACCATGACTGGGATGACAGGGCCGAATTG
CGCGGTTATGTTCAGTTTAATACACACACACACACACACACAGTACACAC
ACACACAGTATCATTGATCCCCCCTCGGGAGGATCAATGCGAGTGGCATA
GAATGACTAGGATGACCGGGCCGGATTGCGCGGTTATGTGCAATTAATAA
ATATACACACACACACACATTGTATCATAGTGTGTGATAATCTTGTCCCA
CTGTACCGTTCTCTTAATCGTACTATACTATACTATACTACACTACTATT
AATATACTGTACCATACTATACCACACAGCTCTGTCTTTGGTTCTGAGAA
TGGGGTATCATACCAATACTTGTGCTGTACTGTACTGTACAACAGTATAC
TTTTATATCCATGCTAATACAGTATTGTGTGTGTGTGTTAATGGACATAG
GTGGCCTTGATGCCGTTGCGCATCCCCATCCAGTATAGCTATTTTTTAGT
AGATGTGGTTGTTAGAGTTTATATCTTTATTGAATACTGTCAGTACTATT
AATACGATTAGTCTAGTACTGTAGCCTTGTCATGTTCTATCAAACGCCTC
GCCTACACTCTCCCATACAAATGGCGTGGCACGGAAACCCTCTTTTTTGT
CCCTCCCCTCCCCCCGTGCAAACAATGCACTTTTAAATATATACTATTGA
TATATACTGATATGATAGTCTATACTACTGTATGCTGTGCGATTGAGGTA
CAATATAGTTCTCCGTTGAAGGTCTAGCGATCAGCTCGGCGGGAGTAAAC
CTTCGGCGTCCTAGCTATAGAGTTCTCGCGTGAATCAATGTTCCTTCATG
ACATCGATTGATGCGAGAACTCGTCGATGCTGACAGTGCAAGCCTGCCAA
CAGCATCGACTGGCGGTGATGCCCCCCAACAAAGCGAAATCGTTTCCCGC
GGCAACCGTGCCTGCGGCAGCAAAGTTGGGACACCGCCGCCGCGGAAAAC
GTGGGACCCGAAGCGAGGAGAGAAGGAATGCTCGGAGGGTCCACGCGAGT
AAGCAGAAGTGTCGACGATGGAGAAGTCGAGGCGTGGTGGGAGTGCCGAA
CCCATCACGTCGAAACGAAGGCAAGAACCTGGGTAGGAAACACCTGGAGG
AACTGAGCGAAAGGCGAAGGGCATTTGCTCGAAAAAAGCGACGGGGGAAG
CGGGCGGAGAGGAAGTCCGCCCGCAAGAAACACAAGGCCGCCAGGGCGAG
GTCTCGGCTGGAGGAGCTCACGTTCGGTACGTTCAACGTTCGCACAGCAG
CAGTTAACGGAGTCAACGGTATCGGCCGCATAGACACCCTACTGAGGGCC
TGTGCTGCAGAGGGTTGTGACGTCATCGGATTGCAGGAGACCAAAAGGGA
TGGAACGTCGGAAATTTCTGCATCTGGATACCGCGTCTTTTTTAGTGGTG
ATTGCAGCGGGGTAAAAGGAAGAAAAGGGCAGCACGGGGTTGGACTTGCG
ATAAAGGAGGAAATCGTTAAAAAGGCTGGCGAGGACGGCATCACAATCGA
GTGCATCAGCCCACGTCTCCTGAAAGCCCGAATTTCGATTAAATCAAACT
TCGTTACATTCGTGGTAGCCTATTCCCCGACCGAGGAAGCGCCGGAGGGG
CAGAAGGCCAAATACATGGCAGCCCTCAACTGCACAGTTGCATCAGTGCC
CGCTCGGGAATATGTCTTCGTTCTAACAGACGCGAACGCCAGGACAGGGA
AGAGAGGTGAGGGCGGAGGAGAAGCAGACAGCAAAGTGTTGGGCGCATAT
GGCCGAGACAAGCTCAACGAAAACGGCAAACTACGGCTGGGTTTCGCTGA
AGACAACAAGCTAGCTCTTCTGAACACTTTCTTTTGCACCCCCAAAAGTG
GCGTGTCCTATACATTCCAAAGCGCCAACCGCAGCAAGGGACAAGCACGT
TTGGATTACACTCTGACAAAGCAGGCGGACCGCCGACTCGTCCGCTGCGT
TAATGTCCGACGCCCCCCTTAGAGTCACCAGAATCGGACCACAATCTCGT
GTACGCCAAAGTCCGCTTCCCGCGCAGGTCCGCACCAAACCGGAGGAAGA
GGGGCACCAGAGAAACTCCGAAGCTGGCCGACCTTAGGCGGTTGATGACT
GACCCGAACCTTCGGTTCCAAGTCGCGAACGCGATGGTTGACGCGCTACC
ACCAATCCCCGATGGCACCTGCATCAGTGACATCGCCACCGACATGGCCG
ACGTCATGCTTTCCACTGCGGCCGAACTGGTACCGCGCTCTAAGCGCCCA
CGCGGAGCACAGGGTTGGTGCGCGGGGCCCGGTGTGGAAGCTGAGATGAA
CGCAGCATGGCAAGAGAGAGAGGAGGCGAGGAGGCGCCTACGCGCAGAAC
CCCACAACAGCAACCTCCGAAAGGCCGTGAAGATCGCCGGGAAAAACCTT
CGGAAGGTGCGCAAGGCTGCCGAGCTGAGCTTCTTCTGGGACTTCGTCCG
CAAACTCGAAAAACTCACTCGAGAAGGCGACCAGGCTGGCTTCTACCAGC
AGCTTAAGGCGATGAACCTGGAAGGGAAGCGAGACCGCAGATCGGCGTAT
GTCAAAGACGAGAACGGCGTCCTCCTGAGAAACGTTGAACTTATCCGCGA
ACGATGGGTCCGGTGGTTCCACACTCTCCTCAACGCCAAGTCGCCGACGC
TTGACCCGAACATCGTAGAAGGCCTTGACCAGTGGCCCGAAAACATGCCG
CTAGGAGTTCAGCCCACGATGCAGGAGCTGACAGACGCCATCCGCTCGTT
GGCGAACGGAAAAGCTGTCGGACCGGACGGAGTCTCCGTCGAGCTGTTCA
AGATCACCCTCAACGGTGATCCTGCCCTGCGCAGGAGACTGCTCGATGTC
ATCATTCGTATATGGAGGGGGGGCGAGGTGCCGCAGCAGTGGAAGGATGC
CATCATCATGGTACTCCACAAAAATAAGGATCGGACTGAGTGCGGCAACT
ACAGGGGCATCTCGCTGGTAGCACACGCCGGCAAGATACTGCTGAAGATC
ATCGCACGCCGCCTCAGCGAGTACTGTGAGCGCGTGGGCATCCTGCCGGA
GGAACAGAGTGGGTTCCGACCGAACCGTTCTACCACCGATATGATGTTTG
TGATTCGTCGGCTGCAGGAGCTGGCGCGGAAGAAACGCCGCTCTACGTAT
GCTTTATCGACCTTACCAACGCGTACGACTCCGTTGATCGAACCCTCCTC
TGGACAGTCCTCGCCCGTTATGGCGTGCCACAGATTATGATCTCGGTCAT
CCGTCAATTCCACGATGGCATGCAAGCATGCGTGCGGCTCGACGACAGGG
TATGCTCGAGGTGGTTCGCTGTGGAACAAGGCCTTCGCCAAGGATACGTG
CTCGCACCCCTCCTGTTCAACATCTTCTTCGCGGCGGTTATAGACGTGGC
CTCCACGCGTTTCAAGGCGGACAAAGGCATCACGGACGCTTTGGTACACC
TGAGGAAGAAAAGGGGGCCGGGGGGCGGGGGAAGCAGCTGCCGAAGAGTC
GGTCCTCGCGACACCGCTTTGGGGTATGCTTTACGCTGACGATGCCGGGG
TCGTCTCGCAATCACCCGAGCAGTTGAGGAAGATGATGGGGTGATCGTGG
TCGTGTGCGCGGCGTTTGGCCTCACCGTATCGGAGGCCAAGACTGAGATC
ATGTGTTTACGCGCGAAGGGGATGCCGGAGTCCACCGCCACATTCAGCGT
AGAGGCAGCGGACCAGGTGTACAATCAGACGAACGAGTTTGTATACCTCG
GAGGAAACATCAACGAAAATGCCGACCTGTCCATCGAGGTCGACCGGCGC
GTACGCAACGCATGGTGCAGCTTCCGGAAGTACACCCTCGAACTGTACGA
CCGACCGAGCGCTCCCCTGGAGCTCAAAATCCGGATGCTAAGAGCCGAGG
TACTCGAGACAATGCTGTACGGATGCGTCACGTGGAGCCCGCGCGCGTGC
CACTACGACACGCTGCGCCGAGCCCACCACAGGTTCTTGGCTCGCTGCAT
CGGTTGGCGAAAGCACAATCGCGCCGACCACCCGATTTCCTATCTGGACA
CGCTCCTCAAGACGGGAAGTGAGAGCATCGAGGCGACGTTACGCAGGAGG
CGGATCTTGTTTGCGGGATTTGTGGCGCGCATGGAGGATACGAGAGTGCC
GAAGTGCGTGATGTTCGGCGAAATGGTGGGGGCGCGGGTTGTGTGGGGGG
CAGGAAAAAGAGTGGATGGGGTGTTTCCTGGACGATCTCAGAGCTTTCGG
CATCAACGCCGACCAGTGGACAACTGCAGCCTAGGACGAGGGAAATGGTG
CAGAACGGCAGAACAAGGGGCGGAACGTTTCATGGCAAAATGGATCGCTG
CCGAGAAAGTCAAGGCTGGACTACGGCACGCAGTGGTATGCCCGAACGTG
ACGGGAAGGACCAAGAAGATGATAGCCCAAAGTAAGCGGGCTCGTGCTGG
TTCGCTCGCCCTTGTTGACTAGCCCCAAGTGGCGCGAACTGGTATCCTCC
GGACGTTCTGTTTGTAGATGCCATGACGTTTTTTCTCTGGTGTTAAGTTC
GTTTTGCTTTGTTTTGCTTTGTTTTGCCTCTATGCTTTCGTTGAAGCCGC
AGCCCTTCGTTCAATCGTCCTTCGAATGCAGGCGCCCCCGTAGCCACACG
TGTTTCTATTTTTTGGAGATGTCGCTTTTTTCGAGTATTTCTTGTACCAT
TTCCGCTTTCTCTTTGTATGGAGAGTACGTCGTACGTTCTTTCCTTTCCG
AATGGTGTTTTCTACCTTGTGACCACGGGCTGGGTTTTTTGACATCAGCT
TATGTGAGAATTCAAATCAATCAATCAATAGGGAATTTGCTTTCTTTTCC
CCTGCCCTTACAAAAATGCACGCATATATACTAATAATATTACCTATTAA
TATTCCTGGTATACTGTATGCTGTACGATTGAGATACAGAAGAGAATGTG
CTCTCTTATTCCCCCAGCCCTTGCAATAGTACCGTACACATGTACCATGC
ACATGGATACTCCAACTGTTAATGCTGATACTGTACGATTGACCTGAAAA
ATCTGTGTTTTTTTCCCCCTGCCTTTGCAAGTATACCGAGAAATATACGA
CGAAAGTACATTTCGAAACCAGCCTTGGTAATGTTGGGGCCTCGAAAGGC
TCACAATCTACAGCGTTTTATTATCAACGGTACTGTTAGCAATGTCGAGT
TAGTACTGTATTTTGTAGTGGGAAGAGCCTTGACAAGTGATGTTCGAAAA
CCCTTGAGATTAGCTCTTGATAAGTGACGTGTCTGCTGACTGCTGGCTGG
CCGGGCTCGCTCTTGTGCCTGTCGTTCTTAAGGCCGAGCTGCTGAAGCTC
AAGGAAGAAGACTCGTCCTCGAAGGGGGCGGACAGCGACAGCGATCATGA
AGGAGGTGAGACACTTTCGATGAGCAAGTAGTCGTGTGGCGTACTTGTTG
GTACCAGATACTAGTATGTAGTGCGATCATGATGGAGGTAAGATAGTTTC
GATGACAAAATACTGAAATAGTATTGAATACCATCATGAAACAGAACGTT
TTGCCATTATTTCTTCTGACTGGAGGATGCTCAGGAAGGTATAGGCGCGT
TCTGGGTTTTCTTTTTAAGAGGTACGGCGCTCCGCGCGTTCGACAGAGTA
CCGTACGAAAGAGAGAGCCAATGAAATGAGTCGCCATGTGATAAGAGCCA
ATGAGATTAGTTATCGAGTGAGAGAGCCAATGAAATGAGTCGCCAAGTGA
TAGGAGCCAATGAGATTAGTCATTGGGTGAGAGAGCCAATGAGATGAGTC
ATCAAGTCAGAGAGCCAATGGGATGAGCCATCAAGTGAGAGGGCCAATGA
GATGGGCCATCAAGTGCTAAGAGCCGATGAGTTGAGTCAGCAAGCGAGAA
AAGCCAATGGGATAATTCATCAAGTGAGAGAGCCAATAAGACGAGTCATC
AAGTGGGAAAACCAATGAGACGAGTCATCAAGTGCTGGGGTGCCATCGCT
TTAATCGATCGTTTTAGCCACCGTCACTAGTTAATACCATAAAAGCGTCG
AATATAGCTTTGTCTCTAAGTCGCGAGCGGACGAGGCGTGCTCCTACGTG
GACCCCCTTTTCTTGCGTTCCTGTATCGTATATAAATATTAATAGATATA
GATATATATATATATATATTAATCACACTTATAGCCGATGGACCTCTAAT
TTCCATCCTGCCTGTGGTCACAAAGGATGTTCCCATCTCTCCCCGGTTCA
CGCCTTGCAATTTTTATCGCGATGCAAGTTCAGCACTCTTACAACTCGTC
AACCAATGGTTGAATTTTACTAACTCACGTTCCCACGCTTTCCGTTACGA
AAGAAAGAACACAAATTCTGCTTAAGCTAAGAATCGAACTCACGACTTCC
GCACTAGCAGGTATGCAGGTTACCTACTAGACCACTCGGGCCATAATTAC
AAGTATAAATTTACGAAACCGCCATTTTCTGTTTCGTGATTTGATCCTTT
ACTTTCGAGTGCACCTTAATTGAGGCAGCGCATTTCAAAGCAGGAGAGTA
CTATTATACTATTATACTGAATTATTAGTCTACAGTTTCCGATGCACGTC
TCGCGCGATATTGCGTGTCTACGCTTAGAGTTAAGACATCCAGCGGTTGA
ACGGGATGGAAAAGACACCGCGCAAGAGTTCTCCGGAGGCAAGGTGTCGG
ATCGCCTCCCCCTCCCTTTGCCCTATCCCTCACCTCCAGCGCCTGCAGCG
CCTCTGAAAATCCTAAGACATCCAGCGGTTGAAGTTGAAGCGTGGGGTAG
TCGTACTCGTGGCCAACTTTTGTCATTTTCTCGTTTTCTCGTTTTCTCGT
TTGTGTTGGTTTGATTTCGTGATTTGACGCAATAAGGCGGCAATTCGGAC
GTGCTCTCGAAGATCGACAGGGAAACCCAGAAGGAGATCATGGAGCGCAT
GAGGAAGGCCATGAGGTGAGATGGAAGAAGAAGTTTTTAACAAGATAAGT
TTGGCTTGAGATTTGTTGATTTACTTTACAGCATTCAAAGCATTTACGAT
CAGTATAAACAGTCAGTCAGGCCTGCGACAGGAGTGGCGGGATACGTTCG
TCCATCGTTGTAAGGTGATACACACTGGCAGGGGTATACTTGTGGGCTAC
TACTGGCTGGTTGTGGCAACTCGAGAGGCGCGACGAATTGGGAAGGCGCA
GGGCGTCAAGCAACGTGGTCGACGAAGGCGGAGAGATTCATCAAATCATG
TTGCAAGAAAATATCGTGCAAGGGCGGAGACTTCCATCAAATCGTGACAA
AAATCTCTCCGTGAGCTTGCGGCGTACAGCCGTTACCCTGTGTTGATGGA
GCGGGTAGACACATTGCTACCCCCCCTCCCCCGTATGAAAAAAGCCCACA
AAACATCGAAACAATAAACTTGGCCTGCTTCCTCCGCAGCGAAAAGTTCC
TCAGCCAGGGCGTGGAGCTGGGGGTCTCAGACTTGGGCGAAGGTACGGCT
GATAAAGAGTCGGAGGACGATGACGACGACTACGAGGACAGTTCCGGTTC
CTAGAACGACGATGACGTTGTCGAGGGGGAGGGAGAGGGTACTCCCAAGA
AAGAGGCGTCGACAGCGTCAGGGGGAGAAACGGAGAGCGAGGAGACCCGC
AGGTCGAATGAACTTACGCCCAAAGTGGAGAGCTTGGCTGTGGTCGCCGC
GCTGGAGCCGAAGGAGACCGGCGGAAGCGTCGTTCTGCTGAACGGC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1407:170257..182002-

>mRNA_F-serratus_M_contig1407.2935.1 ID=mRNA_F-serratus_M_contig1407.2935.1|Name=mRNA_F-serratus_M_contig1407.2935.1|organism=Fucus serratus male|type=CDS|length=600bp|location=Sequence derived from alignment at F-serratus_M_contig1407:170257..182002- (Fucus serratus male)
ATGGACGAACTGCTACGGTCCCCGGGTGGTCAGATGGACGAACTGCTACG
GTCCCCGGGTGGTCAGGCCGAGCTGCTGAAGCTCAAGGAAGAAGACTCGT
CCTCGAAGGGGGCGGACAGCGACAGCGATCATGAAGGAGGCCGAGCTGCT
GAAGCTCAAGGAAGAAGACTCGTCCTCGAAGGGGGCGGACAGCGACAGCG
ATCATGAAGGAGGCGGCAATTCGGACGTGCTCTCGAAGATCGACAGGGAA
ACCCAGAAGGAGATCATGGAGCGCATGAGGAAGGCCATGAGGCGGCAATT
CGGACGTGCTCTCGAAGATCGACAGGGAAACCCAGAAGGAGATCATGGAG
CGCATGAGGAAGGCCATGAGCGAAAAGTTCCTCAGCCAGGGCGTGGAGCT
GGGGGTCTCAGACTTGGGCGAAGGTACGGCTGATAAAGAGTCGGAGGACG
ATGACGACGACTACGAGGACAGTTCCGGTTCCTAGCGAAAAGTTCCTCAG
CCAGGGCGTGGAGCTGGGGGTCTCAGACTTGGGCGAAGGTACGGCTGATA
AAGAGTCGGAGGACGATGACGACGACTACGAGGACAGTTCCGGTTCCTAG
back to top