mRNA_F-serratus_M_contig1401.2918.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1401.2918.1
Unique NamemRNA_F-serratus_M_contig1401.2918.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1401.2918.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1401contigF-serratus_M_contig1401:187318..188349 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size437
Cds size435
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1401.2918.1prot_F-serratus_M_contig1401.2918.1Fucus serratus malepolypeptideF-serratus_M_contig1401 187320..188349 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929385.9607704-CDS-F-serratus_M_contig1401:187319..1875261622929385.9607704-CDS-F-serratus_M_contig1401:187319..187526Fucus serratus maleCDSF-serratus_M_contig1401 187320..187526 -
1690962828.0313652-CDS-F-serratus_M_contig1401:187319..1875261690962828.0313652-CDS-F-serratus_M_contig1401:187319..187526Fucus serratus maleCDSF-serratus_M_contig1401 187320..187526 -
1622929385.975522-CDS-F-serratus_M_contig1401:187809..1879591622929385.975522-CDS-F-serratus_M_contig1401:187809..187959Fucus serratus maleCDSF-serratus_M_contig1401 187810..187959 -
1690962828.0414088-CDS-F-serratus_M_contig1401:187809..1879591690962828.0414088-CDS-F-serratus_M_contig1401:187809..187959Fucus serratus maleCDSF-serratus_M_contig1401 187810..187959 -
1622929385.989879-CDS-F-serratus_M_contig1401:188271..1883491622929385.989879-CDS-F-serratus_M_contig1401:188271..188349Fucus serratus maleCDSF-serratus_M_contig1401 188272..188349 -
1690962828.0505054-CDS-F-serratus_M_contig1401:188271..1883491690962828.0505054-CDS-F-serratus_M_contig1401:188271..188349Fucus serratus maleCDSF-serratus_M_contig1401 188272..188349 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1401.2918.1

>prot_F-serratus_M_contig1401.2918.1 ID=prot_F-serratus_M_contig1401.2918.1|Name=mRNA_F-serratus_M_contig1401.2918.1|organism=Fucus serratus male|type=polypeptide|length=145bp
REVESHPRESSCTQRDLTAVFLKNLKTGAGRDKPASASSAGSSLNFGLVL
GMGNKPEVLSRPSRDLSQGAHSVPPRAPVPPPPSSCMSSMVFEQRKEKVS
KEILLEVFGEGLMHAIAVFNARHPQSLGTPQEGVERSGLETDLAA
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mRNA from alignment at F-serratus_M_contig1401:187318..188349-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1401.2918.1 ID=mRNA_F-serratus_M_contig1401.2918.1|Name=mRNA_F-serratus_M_contig1401.2918.1|organism=Fucus serratus male|type=mRNA|length=1032bp|location=Sequence derived from alignment at F-serratus_M_contig1401:187318..188349- (Fucus serratus male)
CGGGAAGTCGAGAGCCATCCACGGGAATCTTCTTGCACCCAAAGAGATCT
CACGGCCGTCTTCTTGAAAAACCTGAAGGTAGGTTGGATGGCGGCCGTGC
ATCGTATGGAAATCGACCAGGGTGGGAGGGGGGTGAGGAGTCGATAGCAG
TGCGCTGATAGCAACGCGCTCTGAGAGACCCCTATCGGGAGGTCGGCACG
CAGTTGTGCTATACAATACTCGGCTATTGCTGCTGCTGCTGCTGTTTTTT
CTCCCCTTGTTAGTTCGATACAACTTAACTGCTTGTTAATTCGTCAGAGA
AGACTTGTGTCATCGATTCCCACCGCTCGTGTAAGCGTTCAAAATCACTG
CCGTCTCCCCCCTTATTCTCTCTTCTCTTTTGTTGCCCAGACTGGTGCTG
GGCGCGATAAACCCGCCTCCGCCTCATCTGCAGGCTCGTCTTTGAATTTC
GGACTGGTTCTGGGAATGGGTAACAAGCCCGAGGTTTTGTCGCGGCCGTC
GAGAGACTTGTCGCAAGGCGCACACAGTGTTCCCCCGAGGGTAAGGGGAA
AATGTGGTTCTCATGCTAAAGCTAGCGAGAGGGTGAGGGAAGGGGAGCTG
AGCGTCCTCCTTCTCCATCCTTTTAAAAGCGCTGCGCGATTTCCCGAGGG
CATTTAGACCCTTGCTGGGATTGGTCAAGTTCTTCCGAGGGCGTGGTAGG
GAAAACTAGAGCCCGGTCGTTCCCGAGCGCGGCGGAGACTCGTATCACCG
CATTCGCCAGGTGTGGTGCCATCGCCCATCCTCACGGAATCCCGCTCGTT
TCTCCCCCTTTTTCTTGCAGCAGGCACCCGTACCACCACCGCCCTCTTCG
TGCATGAGTTCGATGGTTTTTGAGCAAAGGAAAGAAAAGGTGTCGAAGGA
AATTCTGCTGGAGGTCTTTGGCGAGGGCCTGATGCATGCGATCGCGGTAT
TCAATGCGAGACACCCGCAAAGCCTTGGAACTCCCCAGGAGGGCGTCGAG
CGCTCGGGGCTAGAGACCGACCTCGCGGCGTT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1401:187318..188349-

>mRNA_F-serratus_M_contig1401.2918.1 ID=mRNA_F-serratus_M_contig1401.2918.1|Name=mRNA_F-serratus_M_contig1401.2918.1|organism=Fucus serratus male|type=CDS|length=870bp|location=Sequence derived from alignment at F-serratus_M_contig1401:187318..188349- (Fucus serratus male)
CGGGAAGTCGAGAGCCATCCACGGGAATCTTCTTGCACCCAAAGAGATCT
CACGGCCGTCTTCTTGAAAAACCTGAAGCGGGAAGTCGAGAGCCATCCAC
GGGAATCTTCTTGCACCCAAAGAGATCTCACGGCCGTCTTCTTGAAAAAC
CTGAAGACTGGTGCTGGGCGCGATAAACCCGCCTCCGCCTCATCTGCAGG
CTCGTCTTTGAATTTCGGACTGGTTCTGGGAATGGGTAACAAGCCCGAGG
TTTTGTCGCGGCCGTCGAGAGACTTGTCGCAAGGCGCACACAGTGTTCCC
CCGAGGACTGGTGCTGGGCGCGATAAACCCGCCTCCGCCTCATCTGCAGG
CTCGTCTTTGAATTTCGGACTGGTTCTGGGAATGGGTAACAAGCCCGAGG
TTTTGTCGCGGCCGTCGAGAGACTTGTCGCAAGGCGCACACAGTGTTCCC
CCGAGGGCACCCGTACCACCACCGCCCTCTTCGTGCATGAGTTCGATGGT
TTTTGAGCAAAGGAAAGAAAAGGTGTCGAAGGAAATTCTGCTGGAGGTCT
TTGGCGAGGGCCTGATGCATGCGATCGCGGTATTCAATGCGAGACACCCG
CAAAGCCTTGGAACTCCCCAGGAGGGCGTCGAGCGCTCGGGGCTAGAGAC
CGACCTCGCGGCGGCACCCGTACCACCACCGCCCTCTTCGTGCATGAGTT
CGATGGTTTTTGAGCAAAGGAAAGAAAAGGTGTCGAAGGAAATTCTGCTG
GAGGTCTTTGGCGAGGGCCTGATGCATGCGATCGCGGTATTCAATGCGAG
ACACCCGCAAAGCCTTGGAACTCCCCAGGAGGGCGTCGAGCGCTCGGGGC
TAGAGACCGACCTCGCGGCG
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