mRNA_F-serratus_M_contig140.2911.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig140.2911.1
Unique NamemRNA_F-serratus_M_contig140.2911.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig140.2911.1 vs. uniprot
Match: A0A6H5JTL0_9PHAE (GT23 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTL0_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 1.440e-6
Identity = 28/53 (52.83%), Postives = 44/53 (83.02%), Query Frame = 2 
Query:   89 DSYVDF---FAELKMLSQANIFVGTFSSNVARVVVLLRESRGM-ERSSSLSVD 235
            ++Y DF   FA+L+ L+ A++FVGTFSSN+ R++VLLRES G+ +R+S++S+D
Sbjct:  378 ETYADFVYTFADLQQLTAADLFVGTFSSNIGRLLVLLRESIGLKDRASAVSID 430
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BLAST of mRNA_F-serratus_M_contig140.2911.1 vs. uniprot
Match: D8LU00_ECTSI (Similar to putative alpha-6-fucosyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU00_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 1.990e-6
Identity = 27/58 (46.55%), Postives = 39/58 (67.24%), Query Frame = 2 
Query:   86 YDSYVDFFAELKMLSQANIFVGTFSSNVARVVVLLRESRGMERSSSLSVDVQDWFPER 259
            Y++ V   AEL+ML+ + +F GTFSSNV R+V L+R++  M   S++SVD   WF  R
Sbjct:  101 YEAMVYLRAELEMLAGSAVFSGTFSSNVGRMVALMRKTLNMPDESAVSVDFPAWFAGR 158
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BLAST of mRNA_F-serratus_M_contig140.2911.1 vs. uniprot
Match: A0A6H5LR29_9PHAE (GT23 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LR29_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 2.230e-6
Identity = 29/61 (47.54%), Postives = 40/61 (65.57%), Query Frame = 2 
Query:   56 AVPTQANFMHYDSYVDFFAELKMLSQANIFVGTFSSNVARVVVLLRES-RGMERSSSLSVD 235
            AV T      Y  +V  FA+LKML+  ++FVGT++SNV+R+V LLRE   G  R S +S+D
Sbjct:  224 AVTTHTKSQGYQGFVMVFADLKMLAAGSLFVGTYTSNVSRLVALLREGIHGHARDSCISLD 284
[Close]
BLAST of mRNA_F-serratus_M_contig140.2911.1 vs. uniprot
Match: D7G435_ECTSI (Alpha-(1,6)-fucosyltransferase, family GT23 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G435_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 1.720e-5
Identity = 27/53 (50.94%), Postives = 43/53 (81.13%), Query Frame = 2 
Query:   89 DSYVDF---FAELKMLSQANIFVGTFSSNVARVVVLLRESRGM-ERSSSLSVD 235
            ++Y DF    A+L+ L+ A++FVGTFSSN+ R++VLLRES G+ +R+S++S+D
Sbjct:  386 ETYADFVYTLADLQQLTAADLFVGTFSSNMGRLLVLLRESIGLKDRASAVSID 438
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig140.2911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JTL0_9PHAE1.440e-652.83GT23 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D8LU00_ECTSI1.990e-646.55Similar to putative alpha-6-fucosyltransferase n=1... [more]
A0A6H5LR29_9PHAE2.230e-647.54GT23 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
D7G435_ECTSI1.720e-550.94Alpha-(1,6)-fucosyltransferase, family GT23 n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig140contigF-serratus_M_contig140:600044..600591 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size373
Cds size201
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig140.2911.1prot_F-serratus_M_contig140.2911.1Fucus serratus malepolypeptideF-serratus_M_contig140 600137..600512 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929385.5473769-UTR-F-serratus_M_contig140:600043..6001361622929385.5473769-UTR-F-serratus_M_contig140:600043..600136Fucus serratus maleUTRF-serratus_M_contig140 600044..600136 -
1690962827.7645383-UTR-F-serratus_M_contig140:600043..6001361690962827.7645383-UTR-F-serratus_M_contig140:600043..600136Fucus serratus maleUTRF-serratus_M_contig140 600044..600136 -
1622929385.584609-UTR-F-serratus_M_contig140:600512..6005911622929385.584609-UTR-F-serratus_M_contig140:600512..600591Fucus serratus maleUTRF-serratus_M_contig140 600513..600591 -
1690962827.8082714-UTR-F-serratus_M_contig140:600512..6005911690962827.8082714-UTR-F-serratus_M_contig140:600512..600591Fucus serratus maleUTRF-serratus_M_contig140 600513..600591 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929385.5625896-CDS-F-serratus_M_contig140:600136..6003341622929385.5625896-CDS-F-serratus_M_contig140:600136..600334Fucus serratus maleCDSF-serratus_M_contig140 600137..600334 -
1690962827.779877-CDS-F-serratus_M_contig140:600136..6003341690962827.779877-CDS-F-serratus_M_contig140:600136..600334Fucus serratus maleCDSF-serratus_M_contig140 600137..600334 -
1622929385.5748136-CDS-F-serratus_M_contig140:600509..6005121622929385.5748136-CDS-F-serratus_M_contig140:600509..600512Fucus serratus maleCDSF-serratus_M_contig140 600510..600512 -
1690962827.7938006-CDS-F-serratus_M_contig140:600509..6005121690962827.7938006-CDS-F-serratus_M_contig140:600509..600512Fucus serratus maleCDSF-serratus_M_contig140 600510..600512 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig140.2911.1

>prot_F-serratus_M_contig140.2911.1 ID=prot_F-serratus_M_contig140.2911.1|Name=mRNA_F-serratus_M_contig140.2911.1|organism=Fucus serratus male|type=polypeptide|length=67bp
MHYDSYVDFFAELKMLSQANIFVGTFSSNVARVVVLLRESRGMERSSSLS
VDVQDWFPERHLLVSG*
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mRNA from alignment at F-serratus_M_contig140:600044..600591-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig140.2911.1 ID=mRNA_F-serratus_M_contig140.2911.1|Name=mRNA_F-serratus_M_contig140.2911.1|organism=Fucus serratus male|type=mRNA|length=548bp|location=Sequence derived from alignment at F-serratus_M_contig140:600044..600591- (Fucus serratus male)
TTGGATTTCTGACAGGGCATCTAAGACCACGAACGCATCTTCTACTCAGA
GCGACGCTGTGCCGACGCAGGCAAATTTTATGGTATGTGCGACGGGAGAC
AAGCATGGTTGATCTTGAACTTCATGCGCTGACAAAAGTATCTCAAGCGC
ATGTTATGTGTGGAAGGTATACCTCATTTTGCACCATGTATACCATTCAG
ACTTACCCTTATCACGCGTTCGTTTCACCTTCTCGCAACCCCAATTAACC
GTGCAAGCATTATGACAGTTACGTGGACTTCTTTGCGGAGCTGAAGATGC
TATCGCAAGCAAATATCTTTGTCGGGACCTTTTCTTCCAACGTGGCAAGG
GTTGTGGTGCTTTTGCGCGAATCGAGAGGCATGGAGAGGAGCTCAAGCTT
GAGCGTCGACGTCCAGGACTGGTTTCCTGAGCGTCATCTCCTTGTTAGTG
GGTAATAGGCGTTTCTACGGAGGAAGTATAGGTCGATAATCCGGATTCCT
ACAGCAAAGAAAGGAAGAGCCAGCCAAACAACGATAAAATGGCTTGAT
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Coding sequence (CDS) from alignment at F-serratus_M_contig140:600044..600591-

>mRNA_F-serratus_M_contig140.2911.1 ID=mRNA_F-serratus_M_contig140.2911.1|Name=mRNA_F-serratus_M_contig140.2911.1|organism=Fucus serratus male|type=CDS|length=402bp|location=Sequence derived from alignment at F-serratus_M_contig140:600044..600591- (Fucus serratus male)
ATGATGCATTATGACAGTTACGTGGACTTCTTTGCGGAGCTGAAGATGCT
ATCGCAAGCAAATATCTTTGTCGGGACCTTTTCTTCCAACGTGGCAAGGG
TTGTGGTGCTTTTGCGCGAATCGAGAGGCATGGAGAGGAGCTCAAGCTTG
AGCGTCGACGTCCAGGACTGGTTTCCTGAGCGTCATCTCCTTGTTAGTGG
GTAACATTATGACAGTTACGTGGACTTCTTTGCGGAGCTGAAGATGCTAT
CGCAAGCAAATATCTTTGTCGGGACCTTTTCTTCCAACGTGGCAAGGGTT
GTGGTGCTTTTGCGCGAATCGAGAGGCATGGAGAGGAGCTCAAGCTTGAG
CGTCGACGTCCAGGACTGGTTTCCTGAGCGTCATCTCCTTGTTAGTGGGT
AA
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