prot_F-serratus_M_contig140.2911.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig140.2911.1
Unique Nameprot_F-serratus_M_contig140.2911.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length67
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig140.2911.1 vs. uniprot
Match: A0A6H5JTL0_9PHAE (GT23 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTL0_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 4.850e-7
Identity = 28/53 (52.83%), Postives = 44/53 (83.02%), Query Frame = 0 
Query:    4 DSYVDF---FAELKMLSQANIFVGTFSSNVARVVVLLRESRGM-ERSSSLSVD 52
            ++Y DF   FA+L+ L+ A++FVGTFSSN+ R++VLLRES G+ +R+S++S+D
Sbjct:  378 ETYADFVYTFADLQQLTAADLFVGTFSSNIGRLLVLLRESIGLKDRASAVSID 430
[Close]
BLAST of mRNA_F-serratus_M_contig140.2911.1 vs. uniprot
Match: D8LU00_ECTSI (Similar to putative alpha-6-fucosyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU00_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 8.200e-7
Identity = 27/58 (46.55%), Postives = 39/58 (67.24%), Query Frame = 0 
Query:    3 YDSYVDFFAELKMLSQANIFVGTFSSNVARVVVLLRESRGMERSSSLSVDVQDWFPER 60
            Y++ V   AEL+ML+ + +F GTFSSNV R+V L+R++  M   S++SVD   WF  R
Sbjct:  101 YEAMVYLRAELEMLAGSAVFSGTFSSNVGRMVALMRKTLNMPDESAVSVDFPAWFAGR 158
[Close]
BLAST of mRNA_F-serratus_M_contig140.2911.1 vs. uniprot
Match: D7G435_ECTSI (Alpha-(1,6)-fucosyltransferase, family GT23 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G435_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 5.940e-6
Identity = 27/53 (50.94%), Postives = 43/53 (81.13%), Query Frame = 0 
Query:    4 DSYVDF---FAELKMLSQANIFVGTFSSNVARVVVLLRESRGM-ERSSSLSVD 52
            ++Y DF    A+L+ L+ A++FVGTFSSN+ R++VLLRES G+ +R+S++S+D
Sbjct:  386 ETYADFVYTLADLQQLTAADLFVGTFSSNMGRLLVLLRESIGLKDRASAVSID 438
[Close]
BLAST of mRNA_F-serratus_M_contig140.2911.1 vs. uniprot
Match: A0A6H5LR29_9PHAE (GT23 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LR29_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 1.420e-5
Identity = 26/51 (50.98%), Postives = 37/51 (72.55%), Query Frame = 0 
Query:    3 YDSYVDFFAELKMLSQANIFVGTFSSNVARVVVLLRES-RGMERSSSLSVD 52
            Y  +V  FA+LKML+  ++FVGT++SNV+R+V LLRE   G  R S +S+D
Sbjct:  234 YQGFVMVFADLKMLAAGSLFVGTYTSNVSRLVALLREGIHGHARDSCISLD 284
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig140.2911.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JTL0_9PHAE4.850e-752.83GT23 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D8LU00_ECTSI8.200e-746.55Similar to putative alpha-6-fucosyltransferase n=1... [more]
D7G435_ECTSI5.940e-650.94Alpha-(1,6)-fucosyltransferase, family GT23 n=1 Ta... [more]
A0A6H5LR29_9PHAE1.420e-550.98GT23 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.11350coord: 1..60
e-value: 1.6E-7
score: 32.7
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..37
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 38..66
NoneNo IPR availableTMHMMTMhelixcoord: 15..37
IPR027350Glycosyltransferase family 23 (GT23) domainPROSITEPS51659GT23coord: 1..52
score: 13.117

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig140contigF-serratus_M_contig140:600137..600512 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig140.2911.1mRNA_F-serratus_M_contig140.2911.1Fucus serratus malemRNAF-serratus_M_contig140 600044..600591 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig140.2911.1 ID=prot_F-serratus_M_contig140.2911.1|Name=mRNA_F-serratus_M_contig140.2911.1|organism=Fucus serratus male|type=polypeptide|length=67bp
MHYDSYVDFFAELKMLSQANIFVGTFSSNVARVVVLLRESRGMERSSSLS
VDVQDWFPERHLLVSG*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027350GT23_dom