mRNA_F-serratus_M_contig14.2870.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig14.2870.1
Unique NamemRNA_F-serratus_M_contig14.2870.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig14.2870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig14contigF-serratus_M_contig14:80108..80609 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size504
Cds size501
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929378.8888419-CDS-F-serratus_M_contig14:80107..806081622929378.8888419-CDS-F-serratus_M_contig14:80107..80608Fucus serratus maleCDSF-serratus_M_contig14 80108..80608 +
1690962824.7989585-CDS-F-serratus_M_contig14:80107..806081690962824.7989585-CDS-F-serratus_M_contig14:80107..80608Fucus serratus maleCDSF-serratus_M_contig14 80108..80608 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig14.2870.1prot_F-serratus_M_contig14.2870.1Fucus serratus malepolypeptideF-serratus_M_contig14 80108..80608 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig14.2870.1

>prot_F-serratus_M_contig14.2870.1 ID=prot_F-serratus_M_contig14.2870.1|Name=mRNA_F-serratus_M_contig14.2870.1|organism=Fucus serratus male|type=polypeptide|length=167bp
HVAAADALCATVDETMAEYQTTFSNCEKKGKRSPASRCSTTPCSAHDLGT
TCNEGGEDCSNRSVSSSRSERNTRVPFQSIQFNVATASALEGDREQNDHD
VSDVFSDRKENIGDSSSSMRENEGIIRSTDIQRRRRREDRPGETAVPELR
KPGKKSRRLWSSGSRSG
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mRNA from alignment at F-serratus_M_contig14:80108..80609+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig14.2870.1 ID=mRNA_F-serratus_M_contig14.2870.1|Name=mRNA_F-serratus_M_contig14.2870.1|organism=Fucus serratus male|type=mRNA|length=502bp|location=Sequence derived from alignment at F-serratus_M_contig14:80108..80609+ (Fucus serratus male)
CATGTTGCAGCTGCTGATGCTCTCTGTGCTACCGTTGATGAGACGATGGC
GGAGTATCAGACGACCTTTTCCAACTGCGAAAAAAAGGGCAAACGGTCAC
CCGCAAGCAGATGCTCCACGACACCGTGCTCCGCTCATGATCTTGGCACC
ACATGCAACGAGGGAGGTGAAGATTGCAGTAATCGGAGTGTGAGTTCCTC
GAGGTCCGAACGAAACACGCGCGTGCCGTTTCAGTCCATACAATTCAACG
TAGCAACAGCCTCGGCCTTGGAGGGGGACAGGGAGCAAAACGATCATGAC
GTGTCGGACGTGTTCTCTGACAGAAAAGAAAACATCGGAGACAGCAGCAG
CAGCATGAGAGAGAATGAAGGCATCATCCGGTCAACAGACATCCAGCGGC
GGCGAAGGCGCGAAGATCGACCAGGAGAGACCGCCGTCCCCGAGCTGCGC
AAGCCGGGGAAAAAATCCCGGCGACTTTGGTCGTCAGGATCCAGATCGGG
AC
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Coding sequence (CDS) from alignment at F-serratus_M_contig14:80108..80609+

>mRNA_F-serratus_M_contig14.2870.1 ID=mRNA_F-serratus_M_contig14.2870.1|Name=mRNA_F-serratus_M_contig14.2870.1|organism=Fucus serratus male|type=CDS|length=1002bp|location=Sequence derived from alignment at F-serratus_M_contig14:80108..80609+ (Fucus serratus male)
CATGTTGCAGCTGCTGATGCTCTCTGTGCTACCGTTGATGAGACGATGGC
GGAGTATCAGACGACCTTTTCCAACTGCGAAAAAAAGGGCAAACGGTCAC
CCGCAAGCAGATGCTCCACGACACCGTGCTCCGCTCATGATCTTGGCACC
ACATGCAACGAGGGAGGTGAAGATTGCAGTAATCGGAGTGTGAGTTCCTC
GAGGTCCGAACGAAACACGCGCGTGCCGTTTCAGTCCATACAATTCAACG
TAGCAACAGCCTCGGCCTTGGAGGGGGACAGGGAGCAAAACGATCATGAC
GTGTCGGACGTGTTCTCTGACAGAAAAGAAAACATCGGAGACAGCAGCAG
CAGCATGAGAGAGAATGAAGGCATCATCCGGTCAACAGACATCCAGCGGC
GGCGAAGGCGCGAAGATCGACCAGGAGAGACCGCCGTCCCCGAGCTGCGC
AAGCCGGGGAAAAAATCCCGGCGACTTTGGTCGTCAGGATCCAGATCGGG
ACATGTTGCAGCTGCTGATGCTCTCTGTGCTACCGTTGATGAGACGATGG
CGGAGTATCAGACGACCTTTTCCAACTGCGAAAAAAAGGGCAAACGGTCA
CCCGCAAGCAGATGCTCCACGACACCGTGCTCCGCTCATGATCTTGGCAC
CACATGCAACGAGGGAGGTGAAGATTGCAGTAATCGGAGTGTGAGTTCCT
CGAGGTCCGAACGAAACACGCGCGTGCCGTTTCAGTCCATACAATTCAAC
GTAGCAACAGCCTCGGCCTTGGAGGGGGACAGGGAGCAAAACGATCATGA
CGTGTCGGACGTGTTCTCTGACAGAAAAGAAAACATCGGAGACAGCAGCA
GCAGCATGAGAGAGAATGAAGGCATCATCCGGTCAACAGACATCCAGCGG
CGGCGAAGGCGCGAAGATCGACCAGGAGAGACCGCCGTCCCCGAGCTGCG
CAAGCCGGGGAAAAAATCCCGGCGACTTTGGTCGTCAGGATCCAGATCGG
GA
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