mRNA_F-serratus_M_contig14.2867.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig14.2867.1
Unique NamemRNA_F-serratus_M_contig14.2867.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig14.2867.1 vs. uniprot
Match: A0A6H5KDC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDC0_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 2.080e-22
Identity = 51/58 (87.93%), Postives = 53/58 (91.38%), Query Frame = 2 
Query:    2 VRDKTTLVGKGFGYVLLADRAHAAAALGVHGTKLRGRPLRVMPCGKRTKGRGGKATPG 175
            VRDK TLVGKGFGYVLLADRA AAAAL +HGTKL+GRPLRVMPCGKRTKGRGG A PG
Sbjct:  463 VRDKATLVGKGFGYVLLADRALAAAALALHGTKLKGRPLRVMPCGKRTKGRGGVAKPG 520
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BLAST of mRNA_F-serratus_M_contig14.2867.1 vs. uniprot
Match: D8LFV0_ECTSI (White-brown-complex ABC transporter family (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFV0_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 3.020e-21
Identity = 50/58 (86.21%), Postives = 52/58 (89.66%), Query Frame = 2 
Query:    2 VRDKTTLVGKGFGYVLLADRAHAAAALGVHGTKLRGRPLRVMPCGKRTKGRGGKATPG 175
            VRDK TLVGKGFGYVLLADRA AAAAL + GTKL+GRPLRVMPCGKRTKGRGG A PG
Sbjct:  477 VRDKATLVGKGFGYVLLADRALAAAALALQGTKLKGRPLRVMPCGKRTKGRGGVAKPG 534
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BLAST of mRNA_F-serratus_M_contig14.2867.1 vs. uniprot
Match: A0A024TR24_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TR24_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.620e-7
Identity = 34/73 (46.58%), Postives = 44/73 (60.27%), Query Frame = 2 
Query:    2 VRDKTTLVGKGFGYVLLADRAHAAAALGVHGTKLRGRPLRVMPCGKRTKGRGGKATPGKRSTVLRASREGVLR 220
            +RDK+T +GKGFGYVL  D + AA AL +H +K+  R +RV  CGKR K  GG+  P  +    RA     LR
Sbjct:  328 IRDKSTHLGKGFGYVLFKDVSTAAKALSLHESKMGKREIRVTVCGKRFKNTGGEKAPELKFEGRRARPGAQLR 400
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BLAST of mRNA_F-serratus_M_contig14.2867.1 vs. uniprot
Match: A0A485LPI4_9STRA (Aste57867_24108 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LPI4_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 5.580e-7
Identity = 34/60 (56.67%), Postives = 41/60 (68.33%), Query Frame = 2 
Query:    2 VRDKTTLVGKGFGYVLLADRAHAAAALGVHGTKLRGRPLRVMPCGKRTKG-RGGKATPGK 178
            +RDKTT +GKGFGYVLL D + AA AL ++G K+  R LRV  CGKR K  +G K   GK
Sbjct:  298 IRDKTTHLGKGFGYVLLRDVSTAAKALALNGQKMGKRELRVTVCGKRFKNTQGEKKVDGK 357
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BLAST of mRNA_F-serratus_M_contig14.2867.1 vs. uniprot
Match: W7U9S2_9STRA (Rna binding protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U9S2_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.420e-6
Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = 2 
Query:    2 VRDKTTLVGKGFGYVLLADRAHAAAALGVHGTKLRGRPLRVMPCGKR 142
            VRD  T  GKGFG+VLL D+A  AAAL ++GT  +GR +RV  CGKR
Sbjct:  357 VRDPETQQGKGFGFVLLKDKASVAAALRLNGTSFQGRKIRVTTCGKR 403
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig14.2867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KDC0_9PHAE2.080e-2287.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFV0_ECTSI3.020e-2186.21White-brown-complex ABC transporter family (Partia... [more]
A0A024TR24_9STRA1.620e-746.58Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A485LPI4_9STRA5.580e-756.67Aste57867_24108 protein n=1 Tax=Aphanomyces stella... [more]
W7U9S2_9STRA1.420e-659.57Rna binding protein n=1 Tax=Nannochloropsis gadita... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig14contigF-serratus_M_contig14:34556..35740 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size374
Cds size372
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig14.2867.1prot_F-serratus_M_contig14.2867.1Fucus serratus malepolypeptideF-serratus_M_contig14 34556..35740 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929378.199134-CDS-F-serratus_M_contig14:34555..347471622929378.199134-CDS-F-serratus_M_contig14:34555..34747Fucus serratus maleCDSF-serratus_M_contig14 34556..34747 -
1690962824.440602-CDS-F-serratus_M_contig14:34555..347471690962824.440602-CDS-F-serratus_M_contig14:34555..34747Fucus serratus maleCDSF-serratus_M_contig14 34556..34747 -
1622929378.2133899-CDS-F-serratus_M_contig14:35218..353221622929378.2133899-CDS-F-serratus_M_contig14:35218..35322Fucus serratus maleCDSF-serratus_M_contig14 35219..35322 -
1690962824.4511425-CDS-F-serratus_M_contig14:35218..353221690962824.4511425-CDS-F-serratus_M_contig14:35218..35322Fucus serratus maleCDSF-serratus_M_contig14 35219..35322 -
1622929378.2243948-CDS-F-serratus_M_contig14:35664..357401622929378.2243948-CDS-F-serratus_M_contig14:35664..35740Fucus serratus maleCDSF-serratus_M_contig14 35665..35740 -
1690962824.460022-CDS-F-serratus_M_contig14:35664..357401690962824.460022-CDS-F-serratus_M_contig14:35664..35740Fucus serratus maleCDSF-serratus_M_contig14 35665..35740 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig14.2867.1

>prot_F-serratus_M_contig14.2867.1 ID=prot_F-serratus_M_contig14.2867.1|Name=mRNA_F-serratus_M_contig14.2867.1|organism=Fucus serratus male|type=polypeptide|length=124bp
RARQDNARRERLRLRPTGRPGSRGSGARRSRDKTARPTTPGDALRQADKG
PGREGYAWKEEHGFASFEGRRTTTVEGVRRRLKRKQGTGDVGTQRVGAVA
TPVPHQPRGPTTASGTAERVGGGA
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mRNA from alignment at F-serratus_M_contig14:34556..35740-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig14.2867.1 ID=mRNA_F-serratus_M_contig14.2867.1|Name=mRNA_F-serratus_M_contig14.2867.1|organism=Fucus serratus male|type=mRNA|length=1185bp|location=Sequence derived from alignment at F-serratus_M_contig14:34556..35740- (Fucus serratus male)
CGTGCGAGACAAGACAACGCTCGTCGGGAAAGGCTTCGGCTACGTCCTAC
TGGCCGACCGGGCTCACGCGGCAGCGGTGAGCGAGGATTTTCAGCGATCC
AGCGATTTGTGGGACCCTGAAAGGCGCTCTTGTGCCTCGTGCACAGCGCG
CTGCAGCGACACAGCCCTTGAGACCACCCGTCCTTGACTTGTGCCATGTT
TAAGTGCGTGGCGTGGTAACGACGGAGTAGGGAGGTTAGTGGGTTCATTT
TTCCGTCCCCGGGAGTTCCATCACTGAAACCATTGGACCTCCCAAGGCTC
AAACCTGAAGAGTGCGAACGTATACTGCGATAACCCCTGGAGAGGCAGGA
GGGGGGTTAAGGTCTCCTTCGCCCGTCATCCGCCGTGCTGTGCCATTGGT
CGGCGTTTCTCACCACAGGCGCTCGGCGTTCACGGGACAAAACTGCGAGG
CCGACCACTCCGGGTGATGCCCTGCGGCAAGCGGACAAAGGGCCGGGGCG
GGAAGGCTACGCCTGGAAAGAGGTACGTGGTGGACACTAGAGAGACGCTA
CTCGTTCGTTCCGCTACCAACACCGCGCTCGAGGGCTGCGGCTTTTGGTT
CGCGGTTACATACCAGGGTTCGCTGTCGATATCGCTCCAGTCTCTCATGA
AAATTGCAACTTACATTTTACTCAAGATGAACCGATGGTGGTTGACTGCA
TAAACAGATTCCGTCATAGTCTACATCGCGGAAAGCGGGAGGAAGAAGAG
AAGCTCGTTAGTAAGCACCATATTCAACCTGAATGTGGGGAATGAGCGGT
CTGACGCGGGACGGAACGGCCTAACCTGTCTCGCGAGATGAAATTCTCAG
GCGCGAATGGGGACCGGGAAAAATATAATTTCCCTATCAGCTGACCGCAA
GCAGGGTTGGCAACCACGATGTCCAGTCTGCTAGAAGGACAAACTATTAA
TACAACTGCCTTCCTCCCCCATCCCCCGCCCCCTTTCCGCCAGGAGCACG
GTTTTGCGAGCTTCGAGGGAAGGCGTACTACGACCGTAGAAGGCGTGCGG
CGTCGCCTGAAGCGCAAGCAAGGCACCGGCGACGTCGGCACTCAACGGGT
CGGCGCTGTTGCCACCCCGGTACCACATCAACCGCGGGGCCCCACGACGG
CGAGCGGGACTGCTGAGAGGGTGGGGGGAGGCGCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig14:34556..35740-

>mRNA_F-serratus_M_contig14.2867.1 ID=mRNA_F-serratus_M_contig14.2867.1|Name=mRNA_F-serratus_M_contig14.2867.1|organism=Fucus serratus male|type=CDS|length=744bp|location=Sequence derived from alignment at F-serratus_M_contig14:34556..35740- (Fucus serratus male)
CGTGCGAGACAAGACAACGCTCGTCGGGAAAGGCTTCGGCTACGTCCTAC
TGGCCGACCGGGCTCACGCGGCAGCGCGTGCGAGACAAGACAACGCTCGT
CGGGAAAGGCTTCGGCTACGTCCTACTGGCCGACCGGGCTCACGCGGCAG
CGGCGCTCGGCGTTCACGGGACAAAACTGCGAGGCCGACCACTCCGGGTG
ATGCCCTGCGGCAAGCGGACAAAGGGCCGGGGCGGGAAGGCTACGCCTGG
AAAGAGGCGCTCGGCGTTCACGGGACAAAACTGCGAGGCCGACCACTCCG
GGTGATGCCCTGCGGCAAGCGGACAAAGGGCCGGGGCGGGAAGGCTACGC
CTGGAAAGAGGAGCACGGTTTTGCGAGCTTCGAGGGAAGGCGTACTACGA
CCGTAGAAGGCGTGCGGCGTCGCCTGAAGCGCAAGCAAGGCACCGGCGAC
GTCGGCACTCAACGGGTCGGCGCTGTTGCCACCCCGGTACCACATCAACC
GCGGGGCCCCACGACGGCGAGCGGGACTGCTGAGAGGGTGGGGGGAGGCG
CAGAGCACGGTTTTGCGAGCTTCGAGGGAAGGCGTACTACGACCGTAGAA
GGCGTGCGGCGTCGCCTGAAGCGCAAGCAAGGCACCGGCGACGTCGGCAC
TCAACGGGTCGGCGCTGTTGCCACCCCGGTACCACATCAACCGCGGGGCC
CCACGACGGCGAGCGGGACTGCTGAGAGGGTGGGGGGAGGCGCA
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