mRNA_F-serratus_M_contig1399.2862.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1399.2862.1
Unique NamemRNA_F-serratus_M_contig1399.2862.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1399.2862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1399contigF-serratus_M_contig1399:74689..75017 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size329
Cds size300
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929377.7707675-UTR-F-serratus_M_contig1399:74688..747171622929377.7707675-UTR-F-serratus_M_contig1399:74688..74717Fucus serratus maleUTRF-serratus_M_contig1399 74689..74717 +
1690962824.2914717-UTR-F-serratus_M_contig1399:74688..747171690962824.2914717-UTR-F-serratus_M_contig1399:74688..74717Fucus serratus maleUTRF-serratus_M_contig1399 74689..74717 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929377.7876406-CDS-F-serratus_M_contig1399:74717..750171622929377.7876406-CDS-F-serratus_M_contig1399:74717..75017Fucus serratus maleCDSF-serratus_M_contig1399 74718..75017 +
1690962824.3040323-CDS-F-serratus_M_contig1399:74717..750171690962824.3040323-CDS-F-serratus_M_contig1399:74717..75017Fucus serratus maleCDSF-serratus_M_contig1399 74718..75017 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1399.2862.1prot_F-serratus_M_contig1399.2862.1Fucus serratus malepolypeptideF-serratus_M_contig1399 74718..75017 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1399.2862.1

>prot_F-serratus_M_contig1399.2862.1 ID=prot_F-serratus_M_contig1399.2862.1|Name=mRNA_F-serratus_M_contig1399.2862.1|organism=Fucus serratus male|type=polypeptide|length=100bp
MPLLGLCDRGSSAGWVWRAWRGAIHFSTRARRVRVCKCLPRRHGIRLTPH
TKPLFTSLLDQQSSSLSETRYTIVNRQRVVYFLRQSGVSICHSQVVVFK*
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mRNA from alignment at F-serratus_M_contig1399:74689..75017+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1399.2862.1 ID=mRNA_F-serratus_M_contig1399.2862.1|Name=mRNA_F-serratus_M_contig1399.2862.1|organism=Fucus serratus male|type=mRNA|length=329bp|location=Sequence derived from alignment at F-serratus_M_contig1399:74689..75017+ (Fucus serratus male)
CACATCAACACTCTGATTTAATCTACCCCATGCCCTTGCTAGGTCTCTGT
GATCGAGGGTCGTCGGCGGGGTGGGTATGGCGAGCATGGCGGGGAGCGAT
ACATTTTTCTACTCGGGCAAGGCGTGTGCGTGTGTGCAAATGTTTACCCA
GGCGCCATGGTATACGCCTAACGCCACATACGAAACCGTTATTTACATCG
TTACTCGACCAACAATCTTCCAGCCTTTCAGAGACACGGTACACCATTGT
GAACCGTCAACGAGTCGTATATTTCTTAAGGCAGTCCGGAGTCTCGATCT
GCCATTCCCAGGTTGTGGTGTTCAAGTAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1399:74689..75017+

>mRNA_F-serratus_M_contig1399.2862.1 ID=mRNA_F-serratus_M_contig1399.2862.1|Name=mRNA_F-serratus_M_contig1399.2862.1|organism=Fucus serratus male|type=CDS|length=600bp|location=Sequence derived from alignment at F-serratus_M_contig1399:74689..75017+ (Fucus serratus male)
ATGCCCTTGCTAGGTCTCTGTGATCGAGGGTCGTCGGCGGGGTGGGTATG
GCGAGCATGGCGGGGAGCGATACATTTTTCTACTCGGGCAAGGCGTGTGC
GTGTGTGCAAATGTTTACCCAGGCGCCATGGTATACGCCTAACGCCACAT
ACGAAACCGTTATTTACATCGTTACTCGACCAACAATCTTCCAGCCTTTC
AGAGACACGGTACACCATTGTGAACCGTCAACGAGTCGTATATTTCTTAA
GGCAGTCCGGAGTCTCGATCTGCCATTCCCAGGTTGTGGTGTTCAAGTAG
ATGCCCTTGCTAGGTCTCTGTGATCGAGGGTCGTCGGCGGGGTGGGTATG
GCGAGCATGGCGGGGAGCGATACATTTTTCTACTCGGGCAAGGCGTGTGC
GTGTGTGCAAATGTTTACCCAGGCGCCATGGTATACGCCTAACGCCACAT
ACGAAACCGTTATTTACATCGTTACTCGACCAACAATCTTCCAGCCTTTC
AGAGACACGGTACACCATTGTGAACCGTCAACGAGTCGTATATTTCTTAA
GGCAGTCCGGAGTCTCGATCTGCCATTCCCAGGTTGTGGTGTTCAAGTAG
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