mRNA_F-serratus_M_contig1395.2847.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig1395.2847.1
Unique Name	mRNA_F-serratus_M_contig1395.2847.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

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BLAST of mRNA_F-serratus_M_contig1395.2847.1 vs. uniprot
Match: D7G031_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G031_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 4.400e-31
Identity = 69/116 (59.48%), Postives = 88/116 (75.86%), Query Frame = 1

Query:  244 DAVRELGEYLVEASAVTGHGLLSFWKLHGTDTRDSGTGKVVLSARWPHLGLVARLYAGVEAVNRQVERHFGGGGS----LGLGVRGL-RTSMAPKRVEKMVLLRMNQHLLPEVQTF 576
            DA  EL EYL+E ++   H LLS+W+LHGTDT DSGTG+VVL+ARWPHL LVARLYAG+++ +RQ ERHFGGG      LG  VR L R  M P R+E+M+L+R+N+H++PEV  F
Sbjct:  791 DARAELEEYLLEPASKR-HELLSYWRLHGTDTLDSGTGEVVLAARWPHLALVARLYAGIDSTSRQGERHFGGGSGGGAELGAAVRSLQRGGMPPWRIEQMLLVRLNRHVVPEVVDF 905

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BLAST of mRNA_F-serratus_M_contig1395.2847.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 7.580e-13
Identity = 44/110 (40.00%), Postives = 64/110 (58.18%), Query Frame = 1

Query:  253 RELGEYLVEASA--VTGHGLLSFWKLHGTDTRDSGTGKVVLSARWPHLGLVARLYAGVEAVNRQVERHFGGGGSLGLGVRGLRTSMAPKRVEKMVLLRMNQHLLPEVQTF 576
            RE+  YL E     V G  +L +W   GTD+  + TGKV   A  P+L  +ARLY G+EA + Q ER+F     L   +  LR +M P +VE+M+ +R+N+HL+ EV+  
Sbjct:  511 REVLVYLAENPQLDVDGFNVLGYWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSALAHL---IGQLRCNMLPSKVERMMFIRLNRHLVAEVREL 617

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BLAST of mRNA_F-serratus_M_contig1395.2847.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 8.060e-13
Identity = 44/110 (40.00%), Postives = 64/110 (58.18%), Query Frame = 1

Query:  253 RELGEYLVEASA--VTGHGLLSFWKLHGTDTRDSGTGKVVLSARWPHLGLVARLYAGVEAVNRQVERHFGGGGSLGLGVRGLRTSMAPKRVEKMVLLRMNQHLLPEVQTF 576
            RE+  YL E     V G  +L +W   GTD+  + TGKV   A  P+L  +ARLY G+EA + Q ER+F     L   +  LR +M P +VE+M+ +R+N+HL+ EV+  
Sbjct:  706 REVLVYLAENPQLDVDGFNVLGYWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSALAHL---IGQLRCNMLPSKVERMMFIRLNRHLVAEVREL 812

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BLAST of mRNA_F-serratus_M_contig1395.2847.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 3.470e-12
Identity = 45/110 (40.91%), Postives = 63/110 (57.27%), Query Frame = 1

Query:  253 RELGEYLVEASAVT--GHGLLSFWKLHGTDTRDSGTGKVVLSARWPHLGLVARLYAGVEAVNRQVERHFGGGGSLGLGVRGLRTSMAPKRVEKMVLLRMNQHLLPEVQTF 576
            RE+  YL E   V      LL FW   GTD+  + TGKV   A  P+L  +ARL+ G+EA + Q ER+F     L   +  L  +M   RVE+M+L+R+N+HLL EV+ +
Sbjct:  507 REMLVYLAEQPQVDVDDFNLLGFWNRRGTDSVSAATGKVTSPAEMPYLAFIARLHLGIEATSCQAERNFSALAHL---IGDLCCNMLSHRVERMMLVRLNKHLLAEVRAY 613

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BLAST of mRNA_F-serratus_M_contig1395.2847.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 8.120e-12
Identity = 44/110 (40.00%), Postives = 64/110 (58.18%), Query Frame = 1

Query:  253 RELGEYLVEASAVT--GHGLLSFWKLHGTDTRDSGTGKVVLSARWPHLGLVARLYAGVEAVNRQVERHFGGGGSLGLGVRGLRTSMAPKRVEKMVLLRMNQHLLPEVQTF 576
            RE+  YL E   V   G  L+ FW   GT++    TGKV   A  P+L  +ARL+ G+EA + Q ER+F     L   +  LR +M  ++VE+M+L+R+N+HLL EV+  
Sbjct:  389 REVLVYLAEQPQVDVDGFNLVGFWNRRGTNSVCPTTGKVTAPAEMPYLAFIARLHLGIEATSCQAERNFSALAHL---IGTLRCNMLARKVERMMLIRLNRHLLAEVRAL 495

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BLAST of mRNA_F-serratus_M_contig1395.2847.1 vs. uniprot
Match: A0A6H5KJT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT6_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.850e-11
Identity = 43/110 (39.09%), Postives = 63/110 (57.27%), Query Frame = 1

Query:  253 RELGEYLVEASAVT--GHGLLSFWKLHGTDTRDSGTGKVVLSARWPHLGLVARLYAGVEAVNRQVERHFGGGGSLGLGVRGLRTSMAPKRVEKMVLLRMNQHLLPEVQTF 576
            RE+  YL E   V      +L FW   GTD+  S TG V   A  P+L  +ARL+ G+EA + Q ER+F     L   +  LR +M  ++VE+M+L+R+N+HL+ EV+  
Sbjct:  129 REVLVYLAETEQVEVDDFNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAERNFSALSHL---IGHLRCNMLSRKVERMMLIRLNRHLVDEVREL 235

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BLAST of mRNA_F-serratus_M_contig1395.2847.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 5.700e-11
Identity = 43/110 (39.09%), Postives = 63/110 (57.27%), Query Frame = 1

Query:  253 RELGEYLVEASAVT--GHGLLSFWKLHGTDTRDSGTGKVVLSARWPHLGLVARLYAGVEAVNRQVERHFGGGGSLGLGVRGLRTSMAPKRVEKMVLLRMNQHLLPEVQTF 576
            RE+  YL E   V      +L FW   GTD+  S TG V   A  P+L  +ARL+ G+EA + Q ER+F     L   +  LR +M  ++VE+M+L+R+N+HL+ EV+  
Sbjct:  694 REVLVYLAETEQVEVDDFNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAERNFSALSHL---IGHLRCNMLSRKVERMMLIRLNRHLVDEVREL 800

[Close]

BLAST of mRNA_F-serratus_M_contig1395.2847.1 vs. uniprot
Match: A0A6H5L902_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L902_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 2.880e-9
Identity = 45/124 (36.29%), Postives = 68/124 (54.84%), Query Frame = 1

Query:  253 RELGEYLVEASAVTG--HGLLSFWKLHGTDTRDSGTGKVVLSARWPHLGLVARLYAGVEAVNRQVERHFGGGGSLGLGVRGLRTSMAPKRVEKMVLLRMNQHLLPEVQTFR---GRYEAGAAVG 609
            +E+ EY    +AV    + +L FW+  G+   D   G VV +A++P L ++AR+Y  +++ + Q ER F G   LG     LR +M P RVE ++ LR N HL+PE+       G+  A  AVG
Sbjct:  160 KEVDEYTKLPAAVPAKDYDVLGFWRDAGSPRLDPH-GNVVSAAQFPILSMLARVYLCIDSTSCQSEREFSG---LGFVYNNLRQAMVPDRVEMVMFLRSNPHLIPEINKLDNGLGKLLAAQAVG 279

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BLAST of mRNA_F-serratus_M_contig1395.2847.1 vs. uniprot
Match: A0A6H5L256_9PHAE (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L256_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 1.970e-8
Identity = 40/110 (36.36%), Postives = 62/110 (56.36%), Query Frame = 1

Query:  253 RELGEYLVEASAVTG--HGLLSFWKLHGTDTRDSGTGKVVLSARWPHLGLVARLYAGVEAVNRQVERHFGGGGSLGLGVRGLRTSMAPKRVEKMVLLRMNQHLLPEVQTF 576
            +E+ EY    +AV    + +L FW+  G+   D   G VV +A++P L ++AR+Y  +++ + Q ER F G   LG     LR +M P RVE ++ LR N HL+PE+   
Sbjct:  158 KEVDEYTKLPAAVPAKDYDVLGFWRDAGSPRLDPH-GNVVSAAQFPILSMLARVYLCIDSTSCQSEREFSG---LGFVYNNLRQAMVPDRVEMVMFLRSNPHLIPEINKL 263

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig1395.2847.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig1395.2847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 9


Match Name	E-value	Identity	Description
D7G031_ECTSI	4.400e-31	59.48	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A6H5JTB8_9PHAE	7.580e-13	40.00	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec...	[more]
A0A6H5JGG8_9PHAE	8.060e-13	40.00	Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec...	[more]
A0A6H5JQI6_9PHAE	3.470e-12	40.91	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KDJ6_9PHAE	8.120e-12	40.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KJT6_9PHAE	1.850e-11	39.09	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JRT6_9PHAE	5.700e-11	39.09	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L902_9PHAE	2.880e-9	36.29	Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec...	[more]
A0A6H5L256_9PHAE	1.970e-8	36.36	Dimer_Tnp_hAT domain-containing protein (Fragment)...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig1395	contig	F-serratus_M_contig1395:147299..147929 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	631
Cds size	501
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig1395.2847.1	prot_F-serratus_M_contig1395.2847.1	Fucus serratus male	polypeptide	F-serratus_M_contig1395 147410..147910 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929375.2904792-UTR-F-serratus_M_contig1395:147298..147409	1622929375.2904792-UTR-F-serratus_M_contig1395:147298..147409	Fucus serratus male	UTR	F-serratus_M_contig1395 147299..147409 +
1690962822.985688-UTR-F-serratus_M_contig1395:147298..147409	1690962822.985688-UTR-F-serratus_M_contig1395:147298..147409	Fucus serratus male	UTR	F-serratus_M_contig1395 147299..147409 +
1622929375.3449776-UTR-F-serratus_M_contig1395:147910..147929	1622929375.3449776-UTR-F-serratus_M_contig1395:147910..147929	Fucus serratus male	UTR	F-serratus_M_contig1395 147911..147929 +
1690962823.0138903-UTR-F-serratus_M_contig1395:147910..147929	1690962823.0138903-UTR-F-serratus_M_contig1395:147910..147929	Fucus serratus male	UTR	F-serratus_M_contig1395 147911..147929 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929375.3280349-CDS-F-serratus_M_contig1395:147409..147910	1622929375.3280349-CDS-F-serratus_M_contig1395:147409..147910	Fucus serratus male	CDS	F-serratus_M_contig1395 147410..147910 +
1690962822.9958286-CDS-F-serratus_M_contig1395:147409..147910	1690962822.9958286-CDS-F-serratus_M_contig1395:147409..147910	Fucus serratus male	CDS	F-serratus_M_contig1395 147410..147910 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig1395:147299..147929+
coding sequence from alignment at F-serratus_M_contig1395:147299..147929+

protein sequence of mRNA_F-serratus_M_contig1395.2847.1

>prot_F-serratus_M_contig1395.2847.1 ID=prot_F-serratus_M_contig1395.2847.1|Name=mRNA_F-serratus_M_contig1395.2847.1|organism=Fucus serratus male|type=polypeptide|length=167bp
MRKAHDLALGYSITPGVAASGSGSDEGVGFGGSGGTNPLSGAAADAVREL
GEYLVEASAVTGHGLLSFWKLHGTDTRDSGTGKVVLSARWPHLGLVARLY
AGVEAVNRQVERHFGGGGSLGLGVRGLRTSMAPKRVEKMVLLRMNQHLLP
EVQTFRGRYEAGAAVG*

mRNA from alignment at F-serratus_M_contig1395:147299..147929+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig1395.2847.1 ID=mRNA_F-serratus_M_contig1395.2847.1|Name=mRNA_F-serratus_M_contig1395.2847.1|organism=Fucus serratus male|type=mRNA|length=631bp|location=Sequence derived from alignment at F-serratus_M_contig1395:147299..147929+ (Fucus serratus male)
GAGCTGAAGAAATTCGAGGGCGGAGGATCGGAACCTTCACAGCCGCAATC
CCCTACTCTCGTGGCAGGAGGCCTCGGGTCAAGCGCCTCGAAGCTGAGCC
GACTTGACAAAATGAGAAAAGCGCACGACCTGGCTCTCGGGTACTCGATC
ACCCCCGGAGTTGCAGCCAGCGGAAGCGGTAGCGATGAAGGCGTCGGGTT
TGGCGGCAGCGGCGGGACGAACCCGCTGTCGGGCGCGGCGGCGGATGCGG
TCCGCGAGCTGGGGGAGTACTTGGTGGAGGCGTCGGCCGTCACGGGGCAC
GGGCTACTGTCGTTCTGGAAGCTTCACGGCACGGACACGCGCGACTCTGG
TACCGGCAAGGTGGTGCTTTCAGCGCGGTGGCCGCACCTGGGACTCGTGG
CCAGACTGTATGCGGGGGTCGAGGCCGTGAACCGGCAGGTCGAGAGGCAC
TTCGGTGGTGGGGGTAGTCTCGGCCTCGGCGTGAGGGGTCTGAGGACTTC
GATGGCCCCCAAACGGGTGGAGAAGATGGTGCTCTTAAGGATGAACCAGC
ATCTCTTGCCCGAGGTGCAGACCTTCCGTGGCCGTTACGAAGCTGGCGCT
GCCGTCGGGTGATGATAAAATTGCAGACGGG

Coding sequence (CDS) from alignment at F-serratus_M_contig1395:147299..147929+

>mRNA_F-serratus_M_contig1395.2847.1 ID=mRNA_F-serratus_M_contig1395.2847.1|Name=mRNA_F-serratus_M_contig1395.2847.1|organism=Fucus serratus male|type=CDS|length=1002bp|location=Sequence derived from alignment at F-serratus_M_contig1395:147299..147929+ (Fucus serratus male)
ATGAGAAAAGCGCACGACCTGGCTCTCGGGTACTCGATCACCCCCGGAGT
TGCAGCCAGCGGAAGCGGTAGCGATGAAGGCGTCGGGTTTGGCGGCAGCG
GCGGGACGAACCCGCTGTCGGGCGCGGCGGCGGATGCGGTCCGCGAGCTG
GGGGAGTACTTGGTGGAGGCGTCGGCCGTCACGGGGCACGGGCTACTGTC
GTTCTGGAAGCTTCACGGCACGGACACGCGCGACTCTGGTACCGGCAAGG
TGGTGCTTTCAGCGCGGTGGCCGCACCTGGGACTCGTGGCCAGACTGTAT
GCGGGGGTCGAGGCCGTGAACCGGCAGGTCGAGAGGCACTTCGGTGGTGG
GGGTAGTCTCGGCCTCGGCGTGAGGGGTCTGAGGACTTCGATGGCCCCCA
AACGGGTGGAGAAGATGGTGCTCTTAAGGATGAACCAGCATCTCTTGCCC
GAGGTGCAGACCTTCCGTGGCCGTTACGAAGCTGGCGCTGCCGTCGGGTG
AATGAGAAAAGCGCACGACCTGGCTCTCGGGTACTCGATCACCCCCGGAG
TTGCAGCCAGCGGAAGCGGTAGCGATGAAGGCGTCGGGTTTGGCGGCAGC
GGCGGGACGAACCCGCTGTCGGGCGCGGCGGCGGATGCGGTCCGCGAGCT
GGGGGAGTACTTGGTGGAGGCGTCGGCCGTCACGGGGCACGGGCTACTGT
CGTTCTGGAAGCTTCACGGCACGGACACGCGCGACTCTGGTACCGGCAAG
GTGGTGCTTTCAGCGCGGTGGCCGCACCTGGGACTCGTGGCCAGACTGTA
TGCGGGGGTCGAGGCCGTGAACCGGCAGGTCGAGAGGCACTTCGGTGGTG
GGGGTAGTCTCGGCCTCGGCGTGAGGGGTCTGAGGACTTCGATGGCCCCC
AAACGGGTGGAGAAGATGGTGCTCTTAAGGATGAACCAGCATCTCTTGCC
CGAGGTGCAGACCTTCCGTGGCCGTTACGAAGCTGGCGCTGCCGTCGGGT
GA