mRNA_F-serratus_M_contig1393.2834.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1393.2834.1
Unique NamemRNA_F-serratus_M_contig1393.2834.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1393.2834.1 vs. uniprot
Match: A0A6H5K2J5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J5_9PHAE)

HSP 1 Score: 346 bits (887), Expect = 1.760e-114
Identity = 183/224 (81.70%), Postives = 202/224 (90.18%), Query Frame = 1
Query:    1 MALRTVAAVRCCTRPAVTRSFASAAKGATATGEEHFPPLKLYGIPARYANATYTAASKAGQLDLVQRDLDAFQHLITSNVNFKAYLTNPTVSRSAKVDMVDKAFDAKSKTSAVTKNLLLTMAGNNRLGEADKVIDAFTRMLKAKKGEVDAIVTTAEPLSPQQEKSLAAGLKAQVGEDKKIVLKTEVNPALVGGLTVQIGDKFMDLSISSKIASMKTLMQDSVTS 672
            MALR +AA RCC     TRSFA+AA  ATA    H PPLKLYGIPARYANATY+AASKAG+L++VQRDLDAFQH+I +N NFKAYLTNPTVSRSAKV+MVDKAFDAKSKTS+VTKNLLL MAGN RL +A+KVIDA+TRMLKAKKGE+DAIVTTAEPL+PQQEK+LAAGLKAQ+G ++ IVLKTEVNPALVGGLTVQIGDKFMDLSISSKIASMKTLMQDSV S
Sbjct:   71 MALR-LAAERCCVGKTATRSFATAASKATAASASHDPPLKLYGIPARYANATYSAASKAGELEIVQRDLDAFQHIIRNNANFKAYLTNPTVSRSAKVEMVDKAFDAKSKTSSVTKNLLLAMAGNARLADAEKVIDAYTRMLKAKKGEIDAIVTTAEPLTPQQEKALAAGLKAQIGANETIVLKTEVNPALVGGLTVQIGDKFMDLSISSKIASMKTLMQDSVAS 293          
BLAST of mRNA_F-serratus_M_contig1393.2834.1 vs. uniprot
Match: D7FJT6_ECTSI (ATP synthase O subunit, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJT6_ECTSI)

HSP 1 Score: 346 bits (887), Expect = 3.050e-114
Identity = 183/224 (81.70%), Postives = 202/224 (90.18%), Query Frame = 1
Query:    1 MALRTVAAVRCCTRPAVTRSFASAAKGATATGEEHFPPLKLYGIPARYANATYTAASKAGQLDLVQRDLDAFQHLITSNVNFKAYLTNPTVSRSAKVDMVDKAFDAKSKTSAVTKNLLLTMAGNNRLGEADKVIDAFTRMLKAKKGEVDAIVTTAEPLSPQQEKSLAAGLKAQVGEDKKIVLKTEVNPALVGGLTVQIGDKFMDLSISSKIASMKTLMQDSVTS 672
            MALR +AA RCC     TRSFA+AA  ATA    H PPLKLYGIPARYANATY+AASKAG+L++VQRDLDAFQH+I +N NFKAYLTNPTVSRSAKV+MVDKAFDAKSKTS+VTKNLLL MAGN RL +A+KVIDA+TRMLKAKKGE+DAIVTTAEPL+PQQEK+LAAGLKAQ+G ++ IVLKTEVNPALVGGLTVQIGDKFMDLSISSKIASMKTLMQDSV S
Sbjct:   87 MALR-LAAERCCVGKTATRSFATAASKATAASASHDPPLKLYGIPARYANATYSAASKAGELEIVQRDLDAFQHIIRNNANFKAYLTNPTVSRSAKVEMVDKAFDAKSKTSSVTKNLLLAMAGNARLADAEKVIDAYTRMLKAKKGEIDAIVTTAEPLTPQQEKALAAGLKAQIGANETIVLKTEVNPALVGGLTVQIGDKFMDLSISSKIASMKTLMQDSVAS 309          
BLAST of mRNA_F-serratus_M_contig1393.2834.1 vs. uniprot
Match: A0A836CGT7_9STRA (OSCP/delta subunit of ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGT7_9STRA)

HSP 1 Score: 236 bits (601), Expect = 1.660e-72
Identity = 132/222 (59.46%), Postives = 165/222 (74.32%), Query Frame = 1
Query:    1 MALRTVAAVRCCTRPAVTRSFASAAKGATATGEEHFPPLKLYGIPARYANATYTAASKAGQLDLVQRDLDAFQHLITSNVNFKAYLTNPTVSRSAKVDMVDKAFDAKSKTSAVTKNLLLTMAGNNRLGEADKVIDAFTRMLKAKKGEVDAIVTTAEPLSPQQEKSLAAGLKAQVGEDKKIVLKTEVNPALVGGLTVQIGDKFMDLSISSKIASMKTLMQDSV 666
            MALR +AA     RP   R+FASAA  A     +H PPLKL+GIPARYANATYTAASKAG+LD V+ DL AF  +IT N  F +YL+NPTV+R+ KV +++  FD K  T  +++NL  TMA N RL +A +VI AFT ++KAK+GEVDAIVTTAEPLS  QEK+L A LK QVG+  KI L+T+V+ AL+GGLTVQIGDKFMDLSI++KI S+K  +  +V
Sbjct:    1 MALRQLAARAA--RPLCARTFASAAAAA-----DHSPPLKLFGIPARYANATYTAASKAGKLDAVEADLAAFGAIITRNAEFSSYLSNPTVTRADKVALIESVFDGKHTTD-ISRNLFTTMAANARLSDARRVIGAFTELMKAKRGEVDAIVTTAEPLSAAQEKALIAALKKQVGDTAKIALETKVDAALIGGLTVQIGDKFMDLSIATKIKSVKNTLAGTV 214          
BLAST of mRNA_F-serratus_M_contig1393.2834.1 vs. uniprot
Match: A0A7S2HDJ6_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HDJ6_9STRA)

HSP 1 Score: 174 bits (441), Expect = 1.040e-48
Identity = 89/187 (47.59%), Postives = 130/187 (69.52%), Query Frame = 1
Query:   91 TGEEHFPPLKLYGIPARYANATYTAASKAGQLDLVQRDLDAFQHLITSNVNFKAYLTNPTVSRSAKVDMVDKAFDAKSKTSAVTKNLLLTMAGNNRLGEADKVIDAFTRMLKAKKGEVDAIVTTAEPLSPQQEKSLAAGLKAQVGEDKKIVLKTEVNPALVGGLTVQIGDKFMDLSISSKIASMKTL 651
            + + H PP+ LYG+ ARYANA Y AASK+  LD V+ +L A +   TS+  FK +L NP +SR  K   V     AK   S VT NL+ T+AGN RL E  K++D++ +++KAK+GEV+A + +A+PL+  Q +++AA +K QVGE K +VL TEV+P+++GGL VQIGD+F+DLS+ SKI ++  +
Sbjct:   23 SSDAHKPPIDLYGLHARYANAAYVAASKSSTLDAVESELLAIKASATSSPAFKTFLENPLISRDEKEAQVKDMLAAK--VSPVTLNLMSTLAGNARLAETPKIVDSYVQLMKAKRGEVEATIISADPLTKAQTEAVAAAMKNQVGEGKTVVLSTEVDPSILGGLQVQIGDQFLDLSVGSKIDAVSRM 207          
BLAST of mRNA_F-serratus_M_contig1393.2834.1 vs. uniprot
Match: A0A1Z5JD87_FISSO (F-type H+-transporting ATPase subunit O n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JD87_FISSO)

HSP 1 Score: 172 bits (436), Expect = 5.510e-48
Identity = 97/207 (46.86%), Postives = 135/207 (65.22%), Query Frame = 1
Query:   40 RPAVTRSFASAAKGATATGEEHFPPLKLYGIPARYANATYTAASKAGQLDLVQRDLDAFQHLITSNVNFKAYLTNPTVSRSAKVDMVDKAFDAKSKTSAVTKNLLLTMAGNNRLGEADKVIDAFTRMLKAKKGEVDAIVTTAEPLSPQQEKSLAAGLKAQVGEDKKIVLKTEVNPALVGGLTVQIGDKFMDLSISSKIASMKTLMQD 660
            +P V R   S AK + +T  EH P + L+GI ARYANATY AASKAG+LD V+ +L            +K  L NP ++R AKVD   K  D   K S VT+NLL+TMAGN RL +  KV+  F +++KAK+GEVDA + +AEPLS  Q K++   + +QV + KK+V++   +P++VGGL VQIGD+F+DLS+ S+I  + T+  D
Sbjct:    5 QPFVQRVSMSVAKRSFSTPAEHKPLITLHGIHARYANATYVAASKAGKLDNVEAELKGLAAAAGKPGAWKTLLENPLIARQAKVDACAKLDD---KLSPVTRNLLVTMAGNARLADLPKVVSTFEQLMKAKRGEVDAKIISAEPLSAAQLKAVEKAMASQVPKGKKVVIQAVTDPSIVGGLQVQIGDQFLDLSVKSRIEEISTMSVD 208          
BLAST of mRNA_F-serratus_M_contig1393.2834.1 vs. uniprot
Match: A0A7S0AD47_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AD47_9STRA)

HSP 1 Score: 171 bits (433), Expect = 8.030e-48
Identity = 87/177 (49.15%), Postives = 125/177 (70.62%), Query Frame = 1
Query:  103 HFPPLKLYGIPARYANATYTAASKAGQLDLVQRDLDAFQHLITSNVNFKAYLTNPTVSRSAKVDMVDKAFDAKSKTSAVTKNLLLTMAGNNRLGEADKVIDAFTRMLKAKKGEVDAIVTTAEPLSPQQEKSLAAGLKAQVGEDKKIVLKTEVNPALVGGLTVQIGDKFMDLSISSKI 633
            H PPL+L+G+ ARYANA YT+ASK+GQLD V+ +L A      ++  F  +L NP +SRS+K   V      K   S VT NL+ T+AGN RL EA K++D ++R++KA +GEV A + +A+PL+  Q  ++A+ +K QVG  KK+VL TEV+P+++GGL VQIGD+F+DLS+ S+I
Sbjct:    5 HRPPLQLHGLHARYANAVYTSASKSGQLDKVEGELLAIASTAATSPAFAQFLENPLISRSSKEKTVTDLLSGK--VSPVTLNLMTTLAGNARLSEAPKIVDTYSRLMKAARGEVSATIISADPLTKAQTDAVASAMKGQVGAGKKVVLSTEVDPSILGGLQVQIGDQFLDLSVKSRI 179          
BLAST of mRNA_F-serratus_M_contig1393.2834.1 vs. uniprot
Match: A0A7S4MZM0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MZM0_9STRA)

HSP 1 Score: 171 bits (434), Expect = 1.300e-47
Identity = 86/185 (46.49%), Postives = 127/185 (68.65%), Query Frame = 1
Query:   88 ATGEEHFPPLKLYGIPARYANATYTAASKAGQLDLVQRDLDAFQHLITSNVNFKAYLTNPTVSRSAKVDMVDKAFDAKSKTSAVTKNLLLTMAGNNRLGEADKVIDAFTRMLKAKKGEVDAIVTTAEPLSPQQEKSLAAGLKAQVGEDKKIVLKTEVNPALVGGLTVQIGDKFMDLSISSKIASM 642
            A   EH PP+ L+GI ARYANATY AASK+G LD V+ +L A +   TS+  F ++L NP +SR  K   V        K + VT NL+ T+AGN RL +  K++D + +++KAK+GEV+A++ +A+ L+  Q  ++AA +K Q G  KK+VL T+V+P ++GGL +QIGD+F+DLS+SSKI ++
Sbjct:   26 AVAAEHRPPVDLHGIHARYANATYVAASKSGTLDKVETELAAIKATATSSPAFASFLENPLISRDNKEAQVQDMLGG-GKVTPVTLNLMTTLAGNARLADVPKIVDTYVQLMKAKRGEVEAVIISADKLTKAQTDAVAAAMKGQAGAGKKVVLSTKVDPTIIGGLQIQIGDQFLDLSVSSKIDAL 209          
BLAST of mRNA_F-serratus_M_contig1393.2834.1 vs. uniprot
Match: A0A6U5IKY9_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5IKY9_9STRA)

HSP 1 Score: 170 bits (431), Expect = 3.020e-47
Identity = 86/181 (47.51%), Postives = 125/181 (69.06%), Query Frame = 1
Query:  100 EHFPPLKLYGIPARYANATYTAASKAGQLDLVQRDLDAFQHLITSNVNFKAYLTNPTVSRSAKVDMVDKAFDAKSKTSAVTKNLLLTMAGNNRLGEADKVIDAFTRMLKAKKGEVDAIVTTAEPLSPQQEKSLAAGLKAQVGEDKKIVLKTEVNPALVGGLTVQIGDKFMDLSISSKIASM 642
            EH P + LYGI ARYANA Y AASK+  LDLV+ +L + Q     N  F  YL NPT++R  KV  +        K S VT NL+ T+AGN RL +  KV+D++ +++KAK+GEV+A + +AEPL+  Q  ++A  +K QV + KK++L T+V+P+++GGL VQIGD+F+DLS+S KI+++
Sbjct:   25 EHKPLINLYGINARYANAAYIAASKSKSLDLVETELLSIQKTAHDNAEFGDYLKNPTIARKDKVSAMTSLLS--EKMSPVTVNLMTTLAGNARLADTTKVVDSYIQLMKAKRGEVEATIISAEPLTKAQSDAIATAMKGQVPKGKKVILSTQVDPSILGGLQVQIGDQFLDLSVSGKISTI 203          
BLAST of mRNA_F-serratus_M_contig1393.2834.1 vs. uniprot
Match: A0A7S4D8J3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8J3_HETAK)

HSP 1 Score: 171 bits (433), Expect = 5.960e-47
Identity = 98/198 (49.49%), Postives = 126/198 (63.64%), Query Frame = 1
Query:   40 RPAVTRSFASAAKGATATGEEHFPPLKLYGIPARYANATYTAASKAGQLDLVQRDLDAFQHLITSNVNFKAYLTNPTVSRSAKVDMVDKAFDAKSKTSAVTKNLLLTMAGNNRLGEADKVIDAFTRMLKAKKGEVDAIVTTAEPLSPQQEKSLAAGLKAQVGEDKKIVLKTEVNPALVGGLTVQIGDKFMDLSISSKI 633
            R A+    A+AA+ A AT   H PP +L+G+ ARYANA Y AASKAG L+ V+ ++  FQH++  N  F AYL NPTVSR AKV  VDK F A S  S++T+NLL  MA N RLGE  KV+ A+  +++AK+G                   +   L+AQVG  K I+L T V+PA+VGGL VQIGDK MDLS+S+KI
Sbjct:   49 RAALPLRTATAAR-AFATEAAHMPPKRLFGLHARYANALYVAASKAGALEQVETEVLGFQHMLAKNAEFAAYLRNPTVSREAKVGAVDKLF-AGSSVSSLTQNLLSAMASNARLGETGKVVSAYAELMRAKRGXXXXXXXXXXXXXXXXXXKVTKALEAQVGAGKSILLTTAVDPAIVGGLVVQIGDKVMDLSVSTKI 244          
BLAST of mRNA_F-serratus_M_contig1393.2834.1 vs. uniprot
Match: A0A7R9UCJ0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCJ0_9STRA)

HSP 1 Score: 167 bits (422), Expect = 1.270e-45
Identity = 92/183 (50.27%), Postives = 124/183 (67.76%), Query Frame = 1
Query:   97 EEHFPPLKLYGIPARYANATYTAASKAGQLDLVQRDLDAFQHLITSNVNFKAYLTNPTVSRSAKVDMVDKAFDAKSKTSAVTKNLLLTMAGNNRLGEADKVIDAFTRMLKAKKGEVDAIVTTAEPLSPQQEKSLAAGLKAQVGEDKKIVLKTEVNPALVGGLTVQIGDKFMDLSISSKIASMK 645
            + H PP+KL+G+ ARYANA YTAASK G LD V+ ++ A   ++ SN  F A L NPTV R AKV  +D       + S+VTKNLLLTMA N RL E DKV + F  ++KAKKG VDA VT+A  L+  Q+ ++   L+A +   ++I +  +V+P L+GGL VQIGDK+MDLS++SKI  +K
Sbjct:   47 DAHNPPVKLFGLTARYANAAYTAASKEGSLDQVETEIAAIGSVLKSNAAFAATLANPTVGRDAKVAYLDGILG--DRMSSVTKNLLLTMAANARLDELDKVTENFGDLMKAKKGIVDATVTSAAKLTKAQKTAIRKALEATLESGQQIEMDAKVDPKLLGGLQVQIGDKYMDLSVASKIDRIK 227          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1393.2834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2J5_9PHAE1.760e-11481.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJT6_ECTSI3.050e-11481.70ATP synthase O subunit, mitochondrial n=1 Tax=Ecto... [more]
A0A836CGT7_9STRA1.660e-7259.46OSCP/delta subunit of ATPase n=1 Tax=Tribonema min... [more]
A0A7S2HDJ6_9STRA1.040e-4847.59Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A1Z5JD87_FISSO5.510e-4846.86F-type H+-transporting ATPase subunit O n=2 Tax=Fi... [more]
A0A7S0AD47_9STRA8.030e-4849.15Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S4MZM0_9STRA1.300e-4746.49Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A6U5IKY9_9STRA3.020e-4747.51Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S4D8J3_HETAK5.960e-4749.49Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7R9UCJ0_9STRA1.270e-4550.27Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1393contigF-serratus_M_contig1393:56776..59534 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score347.1
Seed ortholog evalue6.4e-93
Seed eggNOG ortholog2880.D7FJT6
Preferred nameATP5
KEGG koko:K02113,ko:K02137
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko00195,ko01100,ko04714,ko05010,ko05012,ko05016,map00190,map00195,map01100,map04714,map05010,map05012,map05016
KEGG ModuleM00157,M00158
Hectar predicted targeting categorymitochondrion
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005753,GO:0005886,GO:0008270,GO:0009507,GO:0009536,GO:0016020,GO:0016469,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045259,GO:0046872,GO:0046914,GO:0050897,GO:0071944,GO:0098796,GO:0098798,GO:0098800
EggNOG free text desc.proton-transporting ATP synthase activity, rotational mechanism
EggNOG OGsCOG0712@1,KOG1662@2759
Ec32 ortholog descriptionATP synthase O subunit, mitochondrial precursor
Ec32 orthologEc-06_010220.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194
Exons6
Model size1290
Cds size675
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929373.5718873-CDS-F-serratus_M_contig1393:56775..568691622929373.5718873-CDS-F-serratus_M_contig1393:56775..56869Fucus serratus maleCDSF-serratus_M_contig1393 56776..56869 +
1690962822.1029005-CDS-F-serratus_M_contig1393:56775..568691690962822.1029005-CDS-F-serratus_M_contig1393:56775..56869Fucus serratus maleCDSF-serratus_M_contig1393 56776..56869 +
1622929373.5870275-CDS-F-serratus_M_contig1393:57377..575051622929373.5870275-CDS-F-serratus_M_contig1393:57377..57505Fucus serratus maleCDSF-serratus_M_contig1393 57378..57505 +
1690962822.1270561-CDS-F-serratus_M_contig1393:57377..575051690962822.1270561-CDS-F-serratus_M_contig1393:57377..57505Fucus serratus maleCDSF-serratus_M_contig1393 57378..57505 +
1622929373.601821-CDS-F-serratus_M_contig1393:57884..580581622929373.601821-CDS-F-serratus_M_contig1393:57884..58058Fucus serratus maleCDSF-serratus_M_contig1393 57885..58058 +
1690962822.144107-CDS-F-serratus_M_contig1393:57884..580581690962822.144107-CDS-F-serratus_M_contig1393:57884..58058Fucus serratus maleCDSF-serratus_M_contig1393 57885..58058 +
1622929373.6222036-CDS-F-serratus_M_contig1393:58244..583671622929373.6222036-CDS-F-serratus_M_contig1393:58244..58367Fucus serratus maleCDSF-serratus_M_contig1393 58245..58367 +
1690962822.1612577-CDS-F-serratus_M_contig1393:58244..583671690962822.1612577-CDS-F-serratus_M_contig1393:58244..58367Fucus serratus maleCDSF-serratus_M_contig1393 58245..58367 +
1622929373.6370137-CDS-F-serratus_M_contig1393:58607..587331622929373.6370137-CDS-F-serratus_M_contig1393:58607..58733Fucus serratus maleCDSF-serratus_M_contig1393 58608..58733 +
1690962822.1768801-CDS-F-serratus_M_contig1393:58607..587331690962822.1768801-CDS-F-serratus_M_contig1393:58607..58733Fucus serratus maleCDSF-serratus_M_contig1393 58608..58733 +
1622929373.7012186-CDS-F-serratus_M_contig1393:58889..589191622929373.7012186-CDS-F-serratus_M_contig1393:58889..58919Fucus serratus maleCDSF-serratus_M_contig1393 58890..58919 +
1690962822.1850536-CDS-F-serratus_M_contig1393:58889..589191690962822.1850536-CDS-F-serratus_M_contig1393:58889..58919Fucus serratus maleCDSF-serratus_M_contig1393 58890..58919 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929373.7176094-UTR-F-serratus_M_contig1393:58919..595341622929373.7176094-UTR-F-serratus_M_contig1393:58919..59534Fucus serratus maleUTRF-serratus_M_contig1393 58920..59534 +
1690962822.1925788-UTR-F-serratus_M_contig1393:58919..595341690962822.1925788-UTR-F-serratus_M_contig1393:58919..59534Fucus serratus maleUTRF-serratus_M_contig1393 58920..59534 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1393.2834.1prot_F-serratus_M_contig1393.2834.1Fucus serratus malepolypeptideF-serratus_M_contig1393 56776..58919 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1393.2834.1

>prot_F-serratus_M_contig1393.2834.1 ID=prot_F-serratus_M_contig1393.2834.1|Name=mRNA_F-serratus_M_contig1393.2834.1|organism=Fucus serratus male|type=polypeptide|length=225bp
MALRTVAAVRCCTRPAVTRSFASAAKGATATGEEHFPPLKLYGIPARYAN
ATYTAASKAGQLDLVQRDLDAFQHLITSNVNFKAYLTNPTVSRSAKVDMV
DKAFDAKSKTSAVTKNLLLTMAGNNRLGEADKVIDAFTRMLKAKKGEVDA
IVTTAEPLSPQQEKSLAAGLKAQVGEDKKIVLKTEVNPALVGGLTVQIGD
KFMDLSISSKIASMKTLMQDSVTS*
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mRNA from alignment at F-serratus_M_contig1393:56776..59534+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1393.2834.1 ID=mRNA_F-serratus_M_contig1393.2834.1|Name=mRNA_F-serratus_M_contig1393.2834.1|organism=Fucus serratus male|type=mRNA|length=2759bp|location=Sequence derived from alignment at F-serratus_M_contig1393:56776..59534+ (Fucus serratus male)
ATGGCTCTTCGAACGGTAGCCGCTGTGAGGTGCTGCACTAGGCCGGCAGT TACGCGATCCTTTGCGAGTGCTGCCAAGGGAGCTACCGCCACCGGTGAGA GAGACGAATCGCCTCCAGCATGCATTCGCAGGCGCAGTAATCGATATTCG GACAGCGCGCGCGTTGTTTGTCATAAAAAATATCATCCTCAGGCTTCGTT TTTCCTCGTGTACTGTTTGTTCACTCACGAGAGATGTACTGTTTGCCTTT CTTTAGCTACGATGTCGATGTCGTGGCGTGGTGCAAGCTGCTGCTGCTCC CGTTAGAAATGCGTTCCTTGCGTTGACGGTCGATCCTCTGTGACACAGTC CGCTTGTAATCGCTCTTCATTCACGAAGGAGATATTCCCCCACTTCTCCA TTCGCCCAGTGGATCATGTGACTGTTGTATGTGACGGACTGCATCCACTC GTATTGTTGAATGGGGCTGTTGATACTGTTGAAAGTTGTTCTACTGATGT GTCATGACCTTGAAGCGGGCCGGATATTGTTCAGCAGTCACCTGCATCGT GGTTTCCTTTCCGTTCCCATGGTGTTTGTCCTCGTGCCGTGCTGCGACGA AGGGGAAGAACACTTTCCGCCGCTCAAGCTGTACGGTATCCCCGCCCGGT ACGCTAACGCCACGTACACGGCCGCCTCTAAGGCGGGACAGCTGGACCTC GTCCAGCGTGACCTAGACGCTTTCCAGCACGTGAGGTTAACAAGCTTTAC TGTACTGTACTGTACATTATTTGTTATTGTACTGTACAGTATTTGTTATT GAAATTTCTTTTCTGCGTCTTCTGTTTTTCCGTCTCTTTGCTGGAAGGTC GTGTTGAGTAGTTTACTTGTTAATATTAATAGTAGTTTGGTGATGTAAGG AACTGCATTGCTGACGGGTCAAAATCGACACGAGGTAGAGCCCCGACTTG TAGCCTGGATGGAAGCAATTGTGAGAGCGAGACTCGGCCTCGTATGTTTC CCTGCTCCGGAAATGGATCCTCCCTTTTATATCATTCCATCACCTTTGAC AATAACCCCTATTTTCTCCTCCTTGCTCGGCGACGATTCACTCTTGTCTC AAATTAAAGCTTATCACTTCAAACGTGAACTTCAAGGCGTACCTGACGAA CCCCACCGTCTCCCGGAGTGCGAAGGTGGACATGGTTGACAAGGCGTTCG ACGCAAAGTCAAAGACCTCCGCCGTGACCAAAAATCTACTCCTCACCATG GCAGGCAACAATCGGCTCGGGGAAGCAGATAAGGTGACTCCCGCTGGTGT GTCTGGTTCTGGTTGCTTGACAGTTTACTCGAGTGTCAAGGTTCTGAAGA CGGCCACAAGATTTGCTTTCTTTTTGCGCGGCTTCTCTTGCATCGATTCA CAGTATTCTGTACCCAAACGCTGTTCGTGTTCGATTTTATACCGTTTTTG CGTTTTTGGTTTCCCGCAGGTGATCGACGCGTTCACTCGCATGTTGAAGG CGAAGAAGGGAGAGGTGGACGCTATCGTCACCACGGCGGAGCCTCTCAGC CCTCAGCAGGAGAAGTCGTTGGCCGCCGGCCTCAAGGCACAGGTGAAGTT GAAATTTTATTTGTTTAAACTGTATCCGTGGTGCTGTTTGAGAATTTGAT TTAAACCGCTTATTTCCCCTCTCTTGAAAGTTCTCTCGGGTGTTGGATTC GTCGGTCGAGGCAGTCACACGGTGAATATACGGTGGTCAGGTACAGGCTA CGTTGCCGCTTGGTTTGCTTGCCCTGGCCCTTTCCAACCACCGTCTACAC ACCGTCTACGGTCCCCTCTCCGTTGTCTGCAGGTGGGCGAGGACAAAAAA ATCGTTCTGAAAACGGAGGTCAACCCTGCCCTGGTTGGAGGCCTCACGGT GCAGATCGGCGATAAATTCATGGATCTCTCCATCTCGAGCAAGATTGCTT CCATGAAGGTGCGGAGGGTGGAGGGCGCATGCATTACTTACTCCACGTTC AGTGATTCGACTTTACCTCGATGACGGACTACCCCTACGCCGCCGAAATA ATCCGAGCCTTTACGCATATAAACGTCCGCTCCCACTTCCGCCTCCCCAA ATCTGCCTTCCCAGACCCTCATGCAGGACTCCGTCACGAGCTAAGGACTG CTGGTGATCATCTTTTCTTATTGCTCAAGGCCGTCAGGAGAGAAGGGAAT AGGGATGTGTGCCAAGACACGTGCGGTTGCGGAAGGCTAACGTTGGAGAC ACGAGAGGCACAGCCTCGTGCGCTGTTCCATTTTTTCGTTCTAGCCGCCT CGCAGCCAAATGTATTATTATAATATAATACCGGAGTAGGCAGGGATGTC GAGGCGTTTGGGGCTCATCTCACGATGGGGTGTGATTTTTGTGTTTGGAA AACGTGGCGTAGAAATTATAAGGTTACACGAGGGTAGTGCACTGTTTCCG ATTGTGTGAAAGATGTAGAGGACGTCTACGAGTCCTAGAGGAGTCTCATT TGCAGAAACTGATTTTGATCAAGCCTTCAGGAAATTGATCCCCCCGACAC CTTGTAACGTTCACGTTCTAATTGTTCACGTCGGAATGATTGTGGGACGC TGGAACCTCTTCCTCAAAAATTTATCAATTATGCGACGTTTCCATTGGGC AGCATTGTAGTAAAAAGATATTTTCAAATGAAGTGATGTGAGCTACAGCA GGACCATAATGCACTAACGCTACAGAAGGTGAAATAATTTTACTTCCCTC ATACTCTTA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1393:56776..59534+

>mRNA_F-serratus_M_contig1393.2834.1 ID=mRNA_F-serratus_M_contig1393.2834.1|Name=mRNA_F-serratus_M_contig1393.2834.1|organism=Fucus serratus male|type=CDS|length=1350bp|location=Sequence derived from alignment at F-serratus_M_contig1393:56776..59534+ (Fucus serratus male)
ATGGCTCTTCGAACGGTAGCCGCTGTGAGGTGCTGCACTAGGCCGGCAGT
TACGCGATCCTTTGCGAGTGCTGCCAAGGGAGCTACCGCCACCGATGGCT
CTTCGAACGGTAGCCGCTGTGAGGTGCTGCACTAGGCCGGCAGTTACGCG
ATCCTTTGCGAGTGCTGCCAAGGGAGCTACCGCCACCGGGGAAGAACACT
TTCCGCCGCTCAAGCTGTACGGTATCCCCGCCCGGTACGCTAACGCCACG
TACACGGCCGCCTCTAAGGCGGGACAGCTGGACCTCGTCCAGCGTGACCT
AGACGCTTTCCAGCACGGGAAGAACACTTTCCGCCGCTCAAGCTGTACGG
TATCCCCGCCCGGTACGCTAACGCCACGTACACGGCCGCCTCTAAGGCGG
GACAGCTGGACCTCGTCCAGCGTGACCTAGACGCTTTCCAGCACCTTATC
ACTTCAAACGTGAACTTCAAGGCGTACCTGACGAACCCCACCGTCTCCCG
GAGTGCGAAGGTGGACATGGTTGACAAGGCGTTCGACGCAAAGTCAAAGA
CCTCCGCCGTGACCAAAAATCTACTCCTCACCATGGCAGGCAACAATCGG
CTCGGGGAAGCAGATAAGCTTATCACTTCAAACGTGAACTTCAAGGCGTA
CCTGACGAACCCCACCGTCTCCCGGAGTGCGAAGGTGGACATGGTTGACA
AGGCGTTCGACGCAAAGTCAAAGACCTCCGCCGTGACCAAAAATCTACTC
CTCACCATGGCAGGCAACAATCGGCTCGGGGAAGCAGATAAGGTGATCGA
CGCGTTCACTCGCATGTTGAAGGCGAAGAAGGGAGAGGTGGACGCTATCG
TCACCACGGCGGAGCCTCTCAGCCCTCAGCAGGAGAAGTCGTTGGCCGCC
GGCCTCAAGGCACAGGTGATCGACGCGTTCACTCGCATGTTGAAGGCGAA
GAAGGGAGAGGTGGACGCTATCGTCACCACGGCGGAGCCTCTCAGCCCTC
AGCAGGAGAAGTCGTTGGCCGCCGGCCTCAAGGCACAGGTGGGCGAGGAC
AAAAAAATCGTTCTGAAAACGGAGGTCAACCCTGCCCTGGTTGGAGGCCT
CACGGTGCAGATCGGCGATAAATTCATGGATCTCTCCATCTCGAGCAAGA
TTGCTTCCATGAAGGTGGGCGAGGACAAAAAAATCGTTCTGAAAACGGAG
GTCAACCCTGCCCTGGTTGGAGGCCTCACGGTGCAGATCGGCGATAAATT
CATGGATCTCTCCATCTCGAGCAAGATTGCTTCCATGAAGACCCTCATGC
AGGACTCCGTCACGAGCTAAACCCTCATGCAGGACTCCGTCACGAGCTAA
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