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Homology
BLAST of mRNA_F-serratus_M_contig1020.282.1 vs. uniprot
Match: A0A6H5J567_9PHAE (AMMECR1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J567_9PHAE) HSP 1 Score: 163 bits (413), Expect = 5.250e-44 Identity = 73/122 (59.84%), Postives = 89/122 (72.95%), Query Frame = 1
Query: 7 RPDPRESFYSAPVGVLRGLHPCVCCFDALMRHLHDGSDGEALARKKSWEHPREAAVDPEVSFFVGWESPDRDLGRYVTRGFIGSFTPRPFQPALADYSVRAASQDPKFWGLGWAQVPGTRCR 372
RPD RE Y AP+ VL+ HPCV CFDALM HL DG+ + L R+ W A DP V+FF+ WE+ DR LGR+V GF GSFTP PF+PALA+Y+V+AA +DPKFWGLGWAQ+P TRC+
Sbjct: 603 RPDTREQCYGAPIEVLKSFHPCVRCFDALMGHLRDGTGAQELRRRTPWGSTA-VAGDPHVAFFIRWETMDRRLGRFVPTGFRGSFTPSPFRPALAEYAVKAAIEDPKFWGLGWAQIPDTRCK 723
BLAST of mRNA_F-serratus_M_contig1020.282.1 vs. uniprot
Match: D7FTC2_ECTSI (AMMECR1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTC2_ECTSI) HSP 1 Score: 160 bits (405), Expect = 6.250e-43 Identity = 75/130 (57.69%), Postives = 92/130 (70.77%), Query Frame = 1
Query: 7 RPDPRESFYSAPVGVLRGLHPCVCCFDALMRHLHDGSDGEALARKKSWEHPREAAVDPEVSFFVGWESPDRDLGRYVTRGFIGSFTPRPFQPALADYSVRAASQDPKFWGLGWAQVPGTRCRVIVITNFE 396
RPD RE Y AP+ VL+ HPCV CFDALM HL DG+ E L R+ S AA DP V+FFV WE+ DR LGR+ RGF+GSFTP PF+PALA+Y+V+AA++DPKFWGLGWA++P T V+ E
Sbjct: 578 RPDTRERCYDAPIEVLKSFHPCVRCFDALMGHLRDGTGAEELRRRTS-SGSTVAAGDPHVAFFVRWETMDRGLGRFTPRGFMGSFTPSPFRPALAEYAVKAATEDPKFWGLGWARIPDTSYLVVRPVQHE 706
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 162.9 |
Seed ortholog evalue | 1.1e-37 |
Seed eggNOG ortholog | 2880.D7FTC2 |
Preferred name | AMMECR1L |
Hectar predicted targeting category | other localisation |
GOs | GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006950,GO:0006970,GO:0008150,GO:0009628,GO:0009651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0050896 |
EggNOG free text desc. | AMMECR1 |
EggNOG OGs | COG2078@1,KOG3274@2759 |
Ec32 ortholog description | AMMECR1 domain |
Ec32 ortholog | Ec-21_000800.1 |
COG Functional cat. | G |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
Exons | 4 |
Model size | 435 |
Cds size | 435 |
Stop | 1 |
Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928823.7505856-CDS-F-serratus_M_contig1020:93452..93522 | 1622928823.7505856-CDS-F-serratus_M_contig1020:93452..93522 | Fucus serratus male | CDS | F-serratus_M_contig1020 93453..93522 - |
1690962589.0742323-CDS-F-serratus_M_contig1020:93452..93522 | 1690962589.0742323-CDS-F-serratus_M_contig1020:93452..93522 | Fucus serratus male | CDS | F-serratus_M_contig1020 93453..93522 - |
1622928823.7715974-CDS-F-serratus_M_contig1020:94340..94505 | 1622928823.7715974-CDS-F-serratus_M_contig1020:94340..94505 | Fucus serratus male | CDS | F-serratus_M_contig1020 94341..94505 - |
1690962589.0840502-CDS-F-serratus_M_contig1020:94340..94505 | 1690962589.0840502-CDS-F-serratus_M_contig1020:94340..94505 | Fucus serratus male | CDS | F-serratus_M_contig1020 94341..94505 - |
1622928823.7907436-CDS-F-serratus_M_contig1020:94990..95081 | 1622928823.7907436-CDS-F-serratus_M_contig1020:94990..95081 | Fucus serratus male | CDS | F-serratus_M_contig1020 94991..95081 - |
1690962589.0916839-CDS-F-serratus_M_contig1020:94990..95081 | 1690962589.0916839-CDS-F-serratus_M_contig1020:94990..95081 | Fucus serratus male | CDS | F-serratus_M_contig1020 94991..95081 - |
1622928823.810564-CDS-F-serratus_M_contig1020:95349..95458 | 1622928823.810564-CDS-F-serratus_M_contig1020:95349..95458 | Fucus serratus male | CDS | F-serratus_M_contig1020 95350..95458 - |
1690962589.1017022-CDS-F-serratus_M_contig1020:95349..95458 | 1690962589.1017022-CDS-F-serratus_M_contig1020:95349..95458 | Fucus serratus male | CDS | F-serratus_M_contig1020 95350..95458 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1020.282.1 >prot_F-serratus_M_contig1020.282.1 ID=prot_F-serratus_M_contig1020.282.1|Name=mRNA_F-serratus_M_contig1020.282.1|organism=Fucus serratus male|type=polypeptide|length=145bp
APRPDPRESFYSAPVGVLRGLHPCVCCFDALMRHLHDGSDGEALARKKSW EHPREAAVDPEVSFFVGWESPDRDLGRYVTRGFIGSFTPRPFQPALADYS VRAASQDPKFWGLGWAQVPGTRCRVIVITNFEVAQVVTDSPGAI* back to topmRNA from alignment at F-serratus_M_contig1020:93453..95458- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig1020.282.1 ID=mRNA_F-serratus_M_contig1020.282.1|Name=mRNA_F-serratus_M_contig1020.282.1|organism=Fucus serratus male|type=mRNA|length=2006bp|location=Sequence derived from alignment at F-serratus_M_contig1020:93453..95458- (Fucus serratus male) GCACCGCGTCCAGATCCTCGGGAATCGTTCTACTCCGCTCCCGTCGGGGT
GCTGAGGGGTCTCCACCCTTGCGTTTGTTGCTTCGACGCGCTCATGCGCC
ATCTGCACGGTGAGAGAGAGACTCCCCCCTCGGCCCCGCCCCCGTTCCCC
CTGTTTTTGTTCATTGTAAACCCCTCCTAGTGACAAATTTTCAAATGACC
ACACATGTTTCGTTCATCATAAGAGCCTTGGATAGATCACGCCTTGCCCG
GGAGGATAGCACCTCTGCGGGGCACCCGGATGGTGAGGGTGGTAAGAACT
CTGCTACTGCCCATGATAATTCAATTCTTCTGTCGGCCAAAAACATTTTT
CCCGCTAACATTAATCTTCTGCTGCAGACGGATCGGACGGTGAAGCTCTT
GCTCGGAAAAAATCTTGGGAACATCCCAGGGAAGCGGCGGTTGATCCAGA
AGTTTCTTTTTTCGTCGGGTAATTTGCTTCGCTTCTTTTCGAAAATAAAT
GCAATGTGACCGATTCATCGCTCCCGAGACAGTTCTGAAAATACCGTGTT
GGGGCGTTTGCCGGGACTTGAACAACCTCCTATACAGTAGAAATTCTGGG
TGTTAAGTTTCCGTCTGACAAGACTCTGACAAAATATATTACAGGTATAT
CTTCGTTTTAATATTAACTCTTGGGTAGGCATCATCCGACATTATTGGGC
AAATGTGTGATATCTAGAGCTTCTATGCTATCTCGGACCAACCAATAGAT
GATTTATGAGTTCGAGGCGTAGGCTCGCCACGACGACCATTGCGTAAAGT
CTTCATCTTTGTCTACCCTTACTTGTATCAAGAGAGCTTCCTCGAGGAAG
ACGTGGAAAGGGTCAAATAAGCTGCAGGAGGAAATACTTCCCTTTGGTGT
GTCCTCACGATAACAACGCAGCGCGATTGTCTTCCGCCCGCCGACCGTAC
AAGGTGGGAATCGCCAGACAGAGACCTCGGGCGCTATGTAACTCGAGGGT
TCATCGGTAGCTTCACACCCAGGCCTTTCCAGCCAGCTCTGGCAGATTAC
TCCGTCAGGGCGGCCAGTCAGGATCCCAAGTTTTGGGGCCTTGGTTGGGC
TCAAGTCCCGGGTACGAGGTAAGCCAAGGGATCTCCCTGTGATGAGTTCT
TCGTTCAATTCTCATGTTTTATATCCAGACGGGTCTCCATTTTCCCCCTT
ACTCTCCATCACCATCGACTGAGCTCTGCCATGGGTGCGGTTGGGGCGCT
TTAGATTGTGTAGCGCTGCGTTGTACCGAGTGAGTAGGGGGCATGTGGAG
GTTATTATATTATCAGTCGTTATCCGCCCCGAGGGGTGCATATCATGTTG
GTCTGGTGGTTCTTTCTGCTTGGGGGATGTTTTTTAGTAGATCTACGTAA
TACACATAATATATATACCCTCCTGCATAGTATAAACTCTTCACTCAGAC
ACCCATGAACGAACGCCCAGAGACAGAACACGAGAGAGAATATTATAATG
ATTGCTCTAGGTACAGTCGACGCCAATATTATAATGATTGCTCTAGGGCT
TTGACAGAAACTCACGCGTAATTGTAGAAGATAGTTCCTGGTAGTAATTG
CTGACGGCCGTAGATCCCACAAGCGCTCGTAAACCTTTTCTTCGTTAGTC
GTTGCTTTCAGGAGACAAAAAGAGAACTAAGCTCGGGGGCTGTACAAGCA
AGCCCAAACACAATCTCATGCGAAATTTCACAAAGGGAGTTATGCTTCCT
TTTGAGGCATAACGCTGATTCCTCCACCGGTTTCTATGAAACCTTCGTCC
TAACTCAATTAATGGCCCAACATGTCTCTCATCTTAACAAGAGCACAGGT
CTAGGTGCATTCATATTTTTCTTTAAAGAGCACATGGTTCGTCATCTAAT
TTGTCATTTCGCGTGGTCTGTCTCCGATCTTTTCAGGTGTCGGGTCATCG
TCATCACCAATTTTGAAGTGGCACAGGTCGTAACCGACTCACCGGGAGCA
ATTTGA back to topCoding sequence (CDS) from alignment at F-serratus_M_contig1020:93453..95458- >mRNA_F-serratus_M_contig1020.282.1 ID=mRNA_F-serratus_M_contig1020.282.1|Name=mRNA_F-serratus_M_contig1020.282.1|organism=Fucus serratus male|type=CDS|length=870bp|location=Sequence derived from alignment at F-serratus_M_contig1020:93453..95458- (Fucus serratus male) GCACCGCGTCCAGATCCTCGGGAATCGTTCTACTCCGCTCCCGTCGGGGT GCTGAGGGGTCTCCACCCTTGCGTTTGTTGCTTCGACGCGCTCATGCGCC ATCTGCACGGCACCGCGTCCAGATCCTCGGGAATCGTTCTACTCCGCTCC CGTCGGGGTGCTGAGGGGTCTCCACCCTTGCGTTTGTTGCTTCGACGCGC TCATGCGCCATCTGCACGACGGATCGGACGGTGAAGCTCTTGCTCGGAAA AAATCTTGGGAACATCCCAGGGAAGCGGCGGTTGATCCAGAAGTTTCTTT TTTCGTCGGACGGATCGGACGGTGAAGCTCTTGCTCGGAAAAAATCTTGG GAACATCCCAGGGAAGCGGCGGTTGATCCAGAAGTTTCTTTTTTCGTCGG GTGGGAATCGCCAGACAGAGACCTCGGGCGCTATGTAACTCGAGGGTTCA TCGGTAGCTTCACACCCAGGCCTTTCCAGCCAGCTCTGGCAGATTACTCC GTCAGGGCGGCCAGTCAGGATCCCAAGTTTTGGGGCCTTGGTTGGGCTCA AGTCCCGGGTACGAGGTGGGAATCGCCAGACAGAGACCTCGGGCGCTATG TAACTCGAGGGTTCATCGGTAGCTTCACACCCAGGCCTTTCCAGCCAGCT CTGGCAGATTACTCCGTCAGGGCGGCCAGTCAGGATCCCAAGTTTTGGGG CCTTGGTTGGGCTCAAGTCCCGGGTACGAGGTGTCGGGTCATCGTCATCA CCAATTTTGAAGTGGCACAGGTCGTAACCGACTCACCGGGAGCAATTTGA GTGTCGGGTCATCGTCATCACCAATTTTGAAGTGGCACAGGTCGTAACCG ACTCACCGGGAGCAATTTGA back to top
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