mRNA_F-serratus_M_contig139.2816.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig139.2816.1
Unique NamemRNA_F-serratus_M_contig139.2816.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig139.2816.1 vs. uniprot
Match: D7FRA2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRA2_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 2.980e-40
Identity = 73/125 (58.40%), Postives = 92/125 (73.60%), Query Frame = 3 
Query:    6 LYNFRNISLWQAVGLFVSSIVYYICYQGLVEAARMGVPGGAYFDVLVVCLSAQVVGLFSSYGWYIYLLIPGYYSSVAAYWAFRQLSRWVGSQQPESGSEETSAKEQKRLAKKERKAARGPKFRVR 380
            L+ FR    WQ  GL V+S VYY+CY G++EAA+ GV GGAYFDV  VC++ Q+V  FS+YG YIY+L+PGYY+ +A YW FR+L  WV SQQ  + SEE SA + KR AKKERKAAR P+ R+R
Sbjct:   65 LWCFRTFGRWQVFGLAVTSTVYYVCYHGMLEAAKSGVGGGAYFDVFAVCVAGQLVSTFSAYGTYIYMLVPGYYACLAGYWVFRKLGGWVRSQQELNASEEPSAADLKRQAKKERKAARAPRVRMR 189
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig139.2816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRA2_ECTSI2.980e-4058.40Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig139contigF-serratus_M_contig139:584498..586000 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionProtein of unknown function DUF788, TMEM208
Ec32 orthologEc-26_002400.1
Exons2
Model size1076
Cds size276
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig139.2816.1prot_F-serratus_M_contig139.2816.1Fucus serratus malepolypeptideF-serratus_M_contig139 584605..585307 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929369.3790247-UTR-F-serratus_M_contig139:584497..5846041622929369.3790247-UTR-F-serratus_M_contig139:584497..584604Fucus serratus maleUTRF-serratus_M_contig139 584498..584604 +
1690962819.9666922-UTR-F-serratus_M_contig139:584497..5846041690962819.9666922-UTR-F-serratus_M_contig139:584497..584604Fucus serratus maleUTRF-serratus_M_contig139 584498..584604 +
1622929369.4087715-UTR-F-serratus_M_contig139:585307..5860001622929369.4087715-UTR-F-serratus_M_contig139:585307..586000Fucus serratus maleUTRF-serratus_M_contig139 585308..586000 +
1690962819.9930236-UTR-F-serratus_M_contig139:585307..5860001690962819.9930236-UTR-F-serratus_M_contig139:585307..586000Fucus serratus maleUTRF-serratus_M_contig139 585308..586000 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929369.3891342-CDS-F-serratus_M_contig139:584604..5847061622929369.3891342-CDS-F-serratus_M_contig139:584604..584706Fucus serratus maleCDSF-serratus_M_contig139 584605..584706 +
1690962819.9779553-CDS-F-serratus_M_contig139:584604..5847061690962819.9779553-CDS-F-serratus_M_contig139:584604..584706Fucus serratus maleCDSF-serratus_M_contig139 584605..584706 +
1622929369.3990421-CDS-F-serratus_M_contig139:585133..5853071622929369.3990421-CDS-F-serratus_M_contig139:585133..585307Fucus serratus maleCDSF-serratus_M_contig139 585134..585307 +
1690962819.9856334-CDS-F-serratus_M_contig139:585133..5853071690962819.9856334-CDS-F-serratus_M_contig139:585133..585307Fucus serratus maleCDSF-serratus_M_contig139 585134..585307 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig139.2816.1

>prot_F-serratus_M_contig139.2816.1 ID=prot_F-serratus_M_contig139.2816.1|Name=mRNA_F-serratus_M_contig139.2816.1|organism=Fucus serratus male|type=polypeptide|length=92bp
MGVPGGAYFDVLVVCLSAQVVGLFSSYGWYIYLLIPGYYSSVAAYWAFRQ
LSRWVGSQQPESGSEETSAKEQKRLAKKERKAARGPKFRVR*
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mRNA from alignment at F-serratus_M_contig139:584498..586000+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig139.2816.1 ID=mRNA_F-serratus_M_contig139.2816.1|Name=mRNA_F-serratus_M_contig139.2816.1|organism=Fucus serratus male|type=mRNA|length=1503bp|location=Sequence derived from alignment at F-serratus_M_contig139:584498..586000+ (Fucus serratus male)
AAGCATTGTACAACTTCCGCAACATCAGTCTGTGGCAAGCGGTCGGGCTG
TTCGTAAGCTCGATCGTATACTACATTTGCTACCAAGGGTTGGTTGAAGC
GGCGCGAATGGGAGTTCCGGGCGGAGCGTACTTCGATGTCCTCGTGGTTT
GCCTTTCTGCGCAAGTGGTGGGCTTGTTTAGCAGCTACGGATGGTACATC
TACCTTCTGGTGCGGAAAATCATTTTTTTTTCGCGATACTGATATCGATG
CTCTTCGTTTCCCTTACAGTACGGCTCTCACGTACTGTTACGTGATAAAA
TCCATCGCTGTATGTTTTGCGATATCAGCCAGTGCGTCGTAGCTTCGCGC
TTTTCGTCCACGGCACCTCGAACGGCCCGACTGAAAAGTTGGGGCAGACC
ATACCCTGTTGCTGCATAATCTGCTGATTGAGACGTGATCACCACGTGTA
TATACAAGTCACAAGGCGTACTCGAGGAGGAAAACGAAGAAAACTATTAA
CAGTACGTAGTACGAGTAGAGTTTTTCGAGTGCCTATACGACGCGACTGG
ACCCATTCTAGAGTGCGCCGTATTTGCTTGGCATTGCCATTTAAATTAAG
CCCATCGCTTTCGCATGACATGTCTTGAATGGGTAGATTCCAGGATATTA
CTCCAGCGTAGCGGCTTACTGGGCGTTCCGGCAGCTCAGTCGGTGGGTGG
GGTCGCAGCAGCCGGAGAGCGGAAGCGAAGAAACCTCTGCAAAAGAGCAA
AAGCGCCTGGCTAAGAAGGAGAGGAAGGCAGCTAGAGGGCCAAAATTCAG
AGTTCGGTAGAACTGAAGTTTGCTGGGTGCGTAGCTCATGAGTACTGATG
TCGTTTGGTGATGAACGCCTGTTTCATTTTTGATAGGTTATTTTTCGGAC
TAGGGTCTACATTTACTCTTAATTAATATGGGTGCGTGATGGGAACTGGA
TTTTCAGCCAGTGAGGACAGGTCATTTGCGCGTGCCACGAGACAACAGCA
TACCGGTAACCTGTTACCAACCAGCGAGATGCGAGGAAACGGCAGGCTAC
ACTTTAGAGCGTGTAGGTGGACGGAGAGAAGCCTGCCTCGCATATTCATT
TTCTATCCGTTATGTGCGGCGTGGAGGACGGAGGATAGAGCCCACACGGT
CCCAGACTAAAGCGCACAATGTCGCCATTCTGCGACCCGAATATCACTCG
AACGGTAAATATCCGCTGCTGTAACCAGCGCAGCTACTACTTTATCGAAA
TGATTGTTCTTAGATAAGGGTCAACGCGGCTACCAATCGGCTGTTACCGC
TAACCGCGTATGCCTCTCTTTTGAAGAAACAATGTTAAATTATTACTACC
TGTAAGATGATTGTCCGCCGCTGCCATGGTCATAGCGCATCACACAGCGC
TACAGCCGGCTGCGAGCTGTTAGTTCAGTTTGTTGCCTACCGTTATACCG
TACAGCAGATCCATAAGATGGTAGGTACTTTTGACAATCAAGACAAGAAA
TCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig139:584498..586000+

>mRNA_F-serratus_M_contig139.2816.1 ID=mRNA_F-serratus_M_contig139.2816.1|Name=mRNA_F-serratus_M_contig139.2816.1|organism=Fucus serratus male|type=CDS|length=552bp|location=Sequence derived from alignment at F-serratus_M_contig139:584498..586000+ (Fucus serratus male)
ATGGGAGTTCCGGGCGGAGCGTACTTCGATGTCCTCGTGGTTTGCCTTTC
TGCGCAAGTGGTGGGCTTGTTTAGCAGCTACGGATGGTACATCTACCTTC
TGATGGGAGTTCCGGGCGGAGCGTACTTCGATGTCCTCGTGGTTTGCCTT
TCTGCGCAAGTGGTGGGCTTGTTTAGCAGCTACGGATGGTACATCTACCT
TCTGATTCCAGGATATTACTCCAGCGTAGCGGCTTACTGGGCGTTCCGGC
AGCTCAGTCGGTGGGTGGGGTCGCAGCAGCCGGAGAGCGGAAGCGAAGAA
ACCTCTGCAAAAGAGCAAAAGCGCCTGGCTAAGAAGGAGAGGAAGGCAGC
TAGAGGGCCAAAATTCAGAGTTCGGTAGATTCCAGGATATTACTCCAGCG
TAGCGGCTTACTGGGCGTTCCGGCAGCTCAGTCGGTGGGTGGGGTCGCAG
CAGCCGGAGAGCGGAAGCGAAGAAACCTCTGCAAAAGAGCAAAAGCGCCT
GGCTAAGAAGGAGAGGAAGGCAGCTAGAGGGCCAAAATTCAGAGTTCGGT
AG
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