mRNA_F-serratus_M_contig139.2808.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig139.2808.1 vs. uniprot
Match: D7FNQ5_ECTSI (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNQ5_ECTSI) HSP 1 Score: 353 bits (906), Expect = 2.150e-117 Identity = 183/230 (79.57%), Postives = 200/230 (86.96%), Query Frame = 1
Query: 142 SRRRTRTYSSTSRLH-NYLPMVLETTPRGERAYDIYSRLLRERIICLHGPITEQMSSLVTAQLLFLESEDPVKPINMYINSPGGIVTAGLAVYDTMQYVGPEICTICMGQAASMGSLLLTAGTPNMRFILPNAKARERGQRRGGERKGGVMLHQPSGGASGMAADIAIVAEEIIKTRSRLNEIYAQHSGREVVEIAKVMDRDFYMTAQEAIDFGVVDKIITKRPKEQVGS 828
SR R YSST R+ NYLPMVLE+TPRGERAYDIYSRLLRERIIC+HGP+TEQM+SLVTAQLLFLESE+P KPINMYINSPGG+VTAGLA+YDTMQYV PEICTICMGQAASMGSLLLTAG+P MRFILPNAK VMLHQPSGGA+GMAADIAI+AEEIIKTR+RLN+IYA+H+GREV EI KVMDRDFYMTAQEAI+FGVVDKI+ KRPKE GS
Sbjct: 25 SRIAFRAYSSTRRVEMNYLPMVLESTPRGERAYDIYSRLLRERIICMHGPVTEQMTSLVTAQLLFLESENPDKPINMYINSPGGVVTAGLAIYDTMQYVRPEICTICMGQAASMGSLLLTAGSPEMRFILPNAK---------------VMLHQPSGGANGMAADIAIMAEEIIKTRARLNDIYAEHTGREVGEIEKVMDRDFYMTAQEAIEFGVVDKILKKRPKEGEGS 239
BLAST of mRNA_F-serratus_M_contig139.2808.1 vs. uniprot
Match: A0A835Z6X3_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6X3_9STRA) HSP 1 Score: 286 bits (733), Expect = 1.760e-91 Identity = 149/223 (66.82%), Postives = 178/223 (79.82%), Query Frame = 1
Query: 145 RRRTRTYSSTSRLHNYLPMVLETTP-RGERAYDIYSRLLRERIICLHGPITEQMSSLVTAQLLFLESEDPVKPINMYINSPGGIVTAGLAVYDTMQYVGPEICTICMGQAASMGSLLLTAGTPNMRFILPNAKARERGQRRGGERKGGVMLHQPSGGASGMAADIAIVAEEIIKTRSRLNEIYAQHSGREVVEIAKVMDRDFYMTAQEAIDFGVVDKIITKRP 810
R+ R+ SST+ +PMV+E+TP +GER +DIYSRLLRERI+ L GP++E+M+S+VTAQLLFLESEDP KPI+MYINSPGG+VTAGLA+YDTMQYVGP+ICT+CMGQAASM SLLLTAG P MR+ILPNA+ VMLHQPSGGA GMAADIAIVAEEI++TRS LN +Y+ H+G+ V EI KVMDRD + AQ+AI FGVVD I KRP
Sbjct: 15 RQLHRSISSTAVSRALVPMVVESTPGKGERGFDIYSRLLRERIVFLQGPVSEEMASVVTAQLLFLESEDPEKPISMYINSPGGLVTAGLAIYDTMQYVGPKICTVCMGQAASMASLLLTAGEPGMRYILPNAR---------------VMLHQPSGGAHGMAADIAIVAEEILRTRSVLNNLYSHHTGQPVSEIEKVMDRDTHYDAQQAIAFGVVDAIHEKRP 222
BLAST of mRNA_F-serratus_M_contig139.2808.1 vs. uniprot
Match: A0A7S2SUT0_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUT0_9STRA) HSP 1 Score: 271 bits (693), Expect = 1.760e-85 Identity = 136/230 (59.13%), Postives = 170/230 (73.91%), Query Frame = 1
Query: 163 YSSTSRLHNYLPMVLETTPRGERAYDIYSRLLRERIICLHGPITEQMSSLVTAQLLFLESEDPVKPINMYINSPGGIVTAGLAVYDTMQYVGPEICTICMGQAASMGSLLLTAGTPNMRFILPNAKARERGQRRGGERKGGVMLHQPSGGASGMAADIAIVAEEIIKTRSRLNEIYAQHSGREVVEIAKVMDRDFYMTAQEAIDFGVVDKIITKRPKEQV----GSEDEP 840
+ S +RL +P+VLE + RGER+YDIYSRLLRERIICLHG +TE+M+S+VTAQLLFLE+EDP +P +MYINSPGG+V+AGLA+YDTMQY+ P + T+CMGQAASMGSLLL G RF LPNAK +MLHQPSGG GMA+DIAI AEEI+KTRS LN++Y H +E+ ++ VMDRD + +AQEA+DFGV+D ++ KR E V G E P
Sbjct: 15 FRSIARLRGIVPIVLEQSSRGERSYDIYSRLLRERIICLHGAVTEEMASVVTAQLLFLEAEDPDRPCSMYINSPGGLVSAGLAIYDTMQYIRPPVHTVCMGQAASMGSLLLAGGEAGKRFALPNAK---------------IMLHQPSGGTQGMASDIAIAAEEILKTRSSLNKLYVHHCQQELAQVEAVMDRDTWFSAQEALDFGVIDDMLRKREDEPVEEDHGGEGSP 229
BLAST of mRNA_F-serratus_M_contig139.2808.1 vs. uniprot
Match: F0YHM6_AURAN (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHM6_AURAN) HSP 1 Score: 266 bits (680), Expect = 4.860e-84 Identity = 129/208 (62.02%), Postives = 165/208 (79.33%), Query Frame = 1
Query: 193 LPMVLETTPRGERAYDIYSRLLRERIICLHGPITEQMSSLVTAQLLFLESEDPVKPINMYINSPGGIVTAGLAVYDTMQYVGPEICTICMGQAASMGSLLLTAGTPNMRFILPNAKARERGQRRGGERKGGVMLHQPSGGASGMAADIAIVAEEIIKTRSRLNEIYAQHSGREVVEIAKVMDRDFYMTAQEAIDFGVVDKIITKRPKE 816
+PMV+E + RGERA+DIYSRLL+ERII L+GP+ ++++S+VTAQLLFLESEDP PI+MYINSPGG+VTAGLA+YDTMQY+ P + T+CMGQAASMGSLLL AG MR LPNA+ +MLHQPSGGA G A+DIAIVA+EI+KTR++LN+IY H+ + + ++ KVMDRD Y TAQEA+DFGVVD+++ R K+
Sbjct: 2 VPMVIERSSRGERAFDIYSRLLKERIIILNGPVHDELASVVTAQLLFLESEDPTSPISMYINSPGGVVTAGLAIYDTMQYIQPAVATLCMGQAASMGSLLLAAGADGMRRALPNAQ---------------IMLHQPSGGAQGQASDIAIVAKEILKTRAKLNDIYVHHTKKPLADVEKVMDRDSYFTAQEAMDFGVVDEVVHPRTKD 194
BLAST of mRNA_F-serratus_M_contig139.2808.1 vs. uniprot
Match: A0A6U3X7K7_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3X7K7_9STRA) HSP 1 Score: 264 bits (675), Expect = 4.870e-83 Identity = 130/205 (63.41%), Postives = 160/205 (78.05%), Query Frame = 1
Query: 193 LPMVLETTPRGERAYDIYSRLLRERIICLHGPITEQMSSLVTAQLLFLESEDPVKPINMYINSPGGIVTAGLAVYDTMQYVGPEICTICMGQAASMGSLLLTAGTPNMRFILPNAKARERGQRRGGERKGGVMLHQPSGGASGMAADIAIVAEEIIKTRSRLNEIYAQHSGREVVEIAKVMDRDFYMTAQEAIDFGVVDKIITKR 807
+P+VLE T RGERAYDIYSRLLRERIICLHGP+TE M+SLVTAQLLFLESE P +P++MYINSPGG+V+AGLA+YDTMQY+ PE+ T+CMGQAASMGSLLL G P R+ LPNAK +MLHQPSGGA GMA+DIAI AEEI+KTR+ LN +Y +H+G+ + + K MDRD + +A +FGV+D+I+T R
Sbjct: 21 VPIVLEQTSRGERAYDIYSRLLRERIICLHGPVTEDMASLVTAQLLFLESELPDQPLSMYINSPGGLVSAGLAIYDTMQYIKPEVRTMCMGQAASMGSLLLAGGAPGHRYALPNAK---------------IMLHQPSGGAQGMASDIAIQAEEILKTRATLNNLYVRHTGQPLDRVEKAMDRDTWFDVTQAKEFGVIDQILTNR 210
BLAST of mRNA_F-serratus_M_contig139.2808.1 vs. uniprot
Match: B8BVD6_THAPS (ATP-dependent Clp protease proteolytic subunit (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BVD6_THAPS) HSP 1 Score: 263 bits (673), Expect = 4.940e-83 Identity = 127/205 (61.95%), Postives = 162/205 (79.02%), Query Frame = 1
Query: 193 LPMVLETTPRGERAYDIYSRLLRERIICLHGPITEQMSSLVTAQLLFLESEDPVKPINMYINSPGGIVTAGLAVYDTMQYVGPEICTICMGQAASMGSLLLTAGTPNMRFILPNAKARERGQRRGGERKGGVMLHQPSGGASGMAADIAIVAEEIIKTRSRLNEIYAQHSGREVVEIAKVMDRDFYMTAQEAIDFGVVDKIITKR 807
+P+VLE+ GERA+DIYSRLLRERIIC+HG +T+ M+SLVTAQLLFLE+E P KP+ MYINSPGG+VTAG+A+YDTMQY+ PE+ TICMGQAASMGSLLL G+ RF LPNA+ +MLHQPSGGA GMA+DI I A EI++TR+ LN++Y H+GRE+ EI +VMDRD +M ++A+DFGV+D+++TKR
Sbjct: 2 VPVVLESGTTGERAFDIYSRLLRERIICVHGEVTDSMASLVTAQLLFLEAEAPEKPVYMYINSPGGLVTAGMAMYDTMQYIHPEVHTICMGQAASMGSLLLAGGSAGCRFALPNAR---------------IMLHQPSGGAQGMASDIDIQAREILRTRANLNQLYVHHTGRELEEIERVMDRDTFMDVRQAVDFGVIDEVLTKR 191
BLAST of mRNA_F-serratus_M_contig139.2808.1 vs. uniprot
Match: A0A7S3KZ88_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KZ88_9STRA) HSP 1 Score: 264 bits (675), Expect = 1.730e-82 Identity = 129/210 (61.43%), Postives = 165/210 (78.57%), Query Frame = 1
Query: 193 LPMVLETTPRGERAYDIYSRLLRERIICLHGPITEQMSSLVTAQLLFLESEDPVKPINMYINSPGGIVTAGLAVYDTMQYVGPEICTICMGQAASMGSLLLTAGTPNMRFILPNAKARERGQRRGGERKGGVMLHQPSGGASGMAADIAIVAEEIIKTRSRLNEIYAQHSGREVVEIAKVMDRDFYMTAQEAIDFGVVDKIITKRPKEQV 822
+P+VLE+ GER++DIYSRLLRERIIC+HG +T+ M+SLVTAQLLFLESE+P +P+ MYINSPGG+VTAG+A+YDTMQY+ PE+ TICMGQAASMGS+LL G P RF LPN++ +MLHQPSGGA GMAADI I A EI++TR+ LN I A+H+ + + EI +VMDRDF+M AQ+A DFGV+D I+TKR K+++
Sbjct: 46 VPIVLESGAMGERSFDIYSRLLRERIICVHGEVTDVMASLVTAQLLFLESENPDRPVYMYINSPGGLVTAGMAMYDTMQYIRPEVQTICMGQAASMGSVLLAGGEPGYRFALPNSR---------------IMLHQPSGGAQGMAADIDIQAREILRTRANLNRIMAEHTKQSIEEIERVMDRDFFMDAQQAKDFGVIDHILTKRTKDEI 240
BLAST of mRNA_F-serratus_M_contig139.2808.1 vs. uniprot
Match: A0A6S9KWE2_HETAK (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9KWE2_HETAK) HSP 1 Score: 263 bits (672), Expect = 4.140e-82 Identity = 135/245 (55.10%), Postives = 181/245 (73.88%), Query Frame = 1
Query: 82 EAGIKFSSGTMAAVVGDPC--SSRRRTRTYSST-SRLHNYLPMVLETTPRGERAYDIYSRLLRERIICLHGPITEQMSSLVTAQLLFLESEDPVKPINMYINSPGGIVTAGLAVYDTMQYVGPEICTICMGQAASMGSLLLTAGTPNMRFILPNAKARERGQRRGGERKGGVMLHQPSGGASGMAADIAIVAEEIIKTRSRLNEIYAQHSGREVVEIAKVMDRDFYMTAQEAIDFGVVDKIITKR 807
+A +K S + + C SS+ + R ++S+ N +PMVLE++ RGERAYDIYSRLLRERII +HGPITEQ++S+VTAQLLFLE+EDP K + MYINSPGG+VTAG+A+YDTMQ++ ++ TICMGQAASMGSLLL G P R LPNA+ +MLHQPSGGA GMA+DIAI AEEI++ RS LN++Y H+G+ + +I +VM+RD + AQ+A++FGV+DK+++KR
Sbjct: 2 QAIMKSFSSLLTRLAAPRCVPSSQNQMRFFTSSWEPTANLVPMVLESSNRGERAYDIYSRLLRERIIYVHGPITEQLASVVTAQLLFLEAEDPDKKLYMYINSPGGVVTAGMAIYDTMQFIQSDVATICMGQAASMGSLLLAGGAPGQRSALPNAR---------------IMLHQPSGGAQGMASDIAIQAEEILRIRSSLNQLYQHHTGQALADIERVMERDTFFDAQQALNFGVIDKVLSKR 231
BLAST of mRNA_F-serratus_M_contig139.2808.1 vs. uniprot
Match: A0A2D4BRY0_PYTIN (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BRY0_PYTIN) HSP 1 Score: 258 bits (660), Expect = 1.030e-80 Identity = 127/222 (57.21%), Postives = 165/222 (74.32%), Query Frame = 1
Query: 142 SRRRTRTYSSTSRLHNYLPMVLETTPRGERAYDIYSRLLRERIICLHGPITEQMSSLVTAQLLFLESEDPVKPINMYINSPGGIVTAGLAVYDTMQYVGPEICTICMGQAASMGSLLLTAGTPNMRFILPNAKARERGQRRGGERKGGVMLHQPSGGASGMAADIAIVAEEIIKTRSRLNEIYAQHSGREVVEIAKVMDRDFYMTAQEAIDFGVVDKIITKR 807
SRRR T+ L++ +PMVLE +PRGER YDIYSRLL+ERI+ +HGP+ + M+SLVTAQLLFLE+E P K + MYINSPGG+VT+GLA+YDTMQY+ P + T+CMGQAASMG+LLL AG P R+ LPN++ +M+HQPSGGA GMA+DIAI AEEIIK R+RLN ++ H+G+ + I K MDRD +M EA++FG++D I+ KR
Sbjct: 3 SRRRLHTF-----LNSVVPMVLEQSPRGERVYDIYSRLLKERIVFVHGPVNDSMASLVTAQLLFLEAEHPEKDVYMYINSPGGVVTSGLAIYDTMQYIHPRVNTLCMGQAASMGALLLAAGAPGCRYALPNSR---------------IMVHQPSGGAQGMASDIAIQAEEIIKLRARLNGLFVHHTGKPLKTIEKAMDRDLFMDPPEALEFGIIDSIMNKR 204
BLAST of mRNA_F-serratus_M_contig139.2808.1 vs. uniprot
Match: A8TKZ4_9PROT (ATP-dependent Clp protease proteolytic subunit n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A8TKZ4_9PROT) HSP 1 Score: 257 bits (656), Expect = 3.700e-80 Identity = 131/210 (62.38%), Postives = 160/210 (76.19%), Query Frame = 1
Query: 181 LHNYLPMVLETTPRGERAYDIYSRLLRERIICLHGPITEQMSSLVTAQLLFLESEDPVKPINMYINSPGGIVTAGLAVYDTMQYVGPEICTICMGQAASMGSLLLTAGTPNMRFILPNAKARERGQRRGGERKGGVMLHQPSGGASGMAADIAIVAEEIIKTRSRLNEIYAQHSGREVVEIAKVMDRDFYMTAQEAIDFGVVDKIITKRP 810
+++ +PMV+E T RGERAYDIYSRLL+ERII + GPI + ++S+V AQLLFLE+E+P K I MYINSPGGIVT+G+A+YDTM+YV PEI T+CMG AASMGSLLLTAG P R+ LPNAK VM+HQPSGG G A+DI I A EIIKTR RLN+IY +HSGR + EI K MDRD +MTA EA FG++D++I KRP
Sbjct: 9 MNSLVPMVVEQTNRGERAYDIYSRLLKERIIFVMGPINDAVASVVCAQLLFLEAENPTKDIAMYINSPGGIVTSGMAMYDTMEYVRPEISTVCMGHAASMGSLLLTAGAPGKRYCLPNAK---------------VMIHQPSGGFQGQASDIEIHAREIIKTRERLNQIYVKHSGRSIDEIEKGMDRDNFMTADEAKAFGLIDEVIHKRP 203 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig139.2808.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig139.2808.1 >prot_F-serratus_M_contig139.2808.1 ID=prot_F-serratus_M_contig139.2808.1|Name=mRNA_F-serratus_M_contig139.2808.1|organism=Fucus serratus male|type=polypeptide|length=270bp MTLRSLFQRNLVHVEAGIKFSSGTMAAVVGDPCSSRRRTRTYSSTSRLHNback to top mRNA from alignment at F-serratus_M_contig139:407520..410405- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig139.2808.1 ID=mRNA_F-serratus_M_contig139.2808.1|Name=mRNA_F-serratus_M_contig139.2808.1|organism=Fucus serratus male|type=mRNA|length=2886bp|location=Sequence derived from alignment at F-serratus_M_contig139:407520..410405- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig139:407520..410405- >mRNA_F-serratus_M_contig139.2808.1 ID=mRNA_F-serratus_M_contig139.2808.1|Name=mRNA_F-serratus_M_contig139.2808.1|organism=Fucus serratus male|type=CDS|length=1620bp|location=Sequence derived from alignment at F-serratus_M_contig139:407520..410405- (Fucus serratus male)back to top |