mRNA_F-serratus_M_contig139.2810.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig139.2810.1
Unique NamemRNA_F-serratus_M_contig139.2810.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig139.2810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig139contigF-serratus_M_contig139:453049..453584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size289
Cds size288
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929365.65593-CDS-F-serratus_M_contig139:453048..4531971622929365.65593-CDS-F-serratus_M_contig139:453048..453197Fucus serratus maleCDSF-serratus_M_contig139 453049..453197 +
1690962818.1608894-CDS-F-serratus_M_contig139:453048..4531971690962818.1608894-CDS-F-serratus_M_contig139:453048..453197Fucus serratus maleCDSF-serratus_M_contig139 453049..453197 +
1622929365.675648-CDS-F-serratus_M_contig139:453445..4535841622929365.675648-CDS-F-serratus_M_contig139:453445..453584Fucus serratus maleCDSF-serratus_M_contig139 453446..453584 +
1690962818.1775897-CDS-F-serratus_M_contig139:453445..4535841690962818.1775897-CDS-F-serratus_M_contig139:453445..453584Fucus serratus maleCDSF-serratus_M_contig139 453446..453584 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig139.2810.1prot_F-serratus_M_contig139.2810.1Fucus serratus malepolypeptideF-serratus_M_contig139 453049..453584 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig139.2810.1

>prot_F-serratus_M_contig139.2810.1 ID=prot_F-serratus_M_contig139.2810.1|Name=mRNA_F-serratus_M_contig139.2810.1|organism=Fucus serratus male|type=polypeptide|length=96bp
KKAAAVETAKKAAAVETAKKAPAVETAKKRRSRLRLFWGVHGCPQRKDER
SPDKSASFKRRKAKTAARKRLLQLKKSSTAKIMVGGQARVLMRGG*
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mRNA from alignment at F-serratus_M_contig139:453049..453584+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig139.2810.1 ID=mRNA_F-serratus_M_contig139.2810.1|Name=mRNA_F-serratus_M_contig139.2810.1|organism=Fucus serratus male|type=mRNA|length=536bp|location=Sequence derived from alignment at F-serratus_M_contig139:453049..453584+ (Fucus serratus male)
AAAAAAGCGGCGGCGGTGGAGACGGCTAAAAAAGCGGCAGCGGTGGAGAC
GGCTAAAAAAGCGCCGGCGGTGGAGACGGCTAAAAAACGCCGAAGCCGGT
TGCGGCTCTTTTGGGGGGTGCACGGCTGTCCGCAAAGGAAAGATGAAAGG
TGAGTAAAAATCATACATCTTCCTGCGACCCTGGATGTGCGCAGCTTTGA
CCTTTTTGATCCCACAATGAAATATGTCTTGGACGTGCGAACATAGGCGG
CATTTGATCCTAGCATAACTATACTACCTTAGCCCCGGTCGAACAGACCT
TTTCGCAAGCGCTTGACCACGGACATACCTTCCCCTGTCAAAAACGCCTT
CCACCCCCGGTTAAATCGTGTAACTCTCGTTTGCGGTACCTGTAAAGATC
TCCCGACAAGAGCGCGAGCTTCAAAAGGCGAAAGGCAAAGACAGCCGCAC
GCAAGCGCCTGTTGCAATTGAAAAAGAGCTCTACAGCAAAGATTATGGTG
GGAGGACAGGCACGGGTGCTGATGCGGGGGGGATAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig139:453049..453584+

>mRNA_F-serratus_M_contig139.2810.1 ID=mRNA_F-serratus_M_contig139.2810.1|Name=mRNA_F-serratus_M_contig139.2810.1|organism=Fucus serratus male|type=CDS|length=576bp|location=Sequence derived from alignment at F-serratus_M_contig139:453049..453584+ (Fucus serratus male)
AAAAAAGCGGCGGCGGTGGAGACGGCTAAAAAAGCGGCAGCGGTGGAGAC
GGCTAAAAAAGCGCCGGCGGTGGAGACGGCTAAAAAACGCCGAAGCCGGT
TGCGGCTCTTTTGGGGGGTGCACGGCTGTCCGCAAAGGAAAGATGAAAGA
AAAAAGCGGCGGCGGTGGAGACGGCTAAAAAAGCGGCAGCGGTGGAGACG
GCTAAAAAAGCGCCGGCGGTGGAGACGGCTAAAAAACGCCGAAGCCGGTT
GCGGCTCTTTTGGGGGGTGCACGGCTGTCCGCAAAGGAAAGATGAAAGAT
CTCCCGACAAGAGCGCGAGCTTCAAAAGGCGAAAGGCAAAGACAGCCGCA
CGCAAGCGCCTGTTGCAATTGAAAAAGAGCTCTACAGCAAAGATTATGGT
GGGAGGACAGGCACGGGTGCTGATGCGGGGGGGATAGATCTCCCGACAAG
AGCGCGAGCTTCAAAAGGCGAAAGGCAAAGACAGCCGCACGCAAGCGCCT
GTTGCAATTGAAAAAGAGCTCTACAGCAAAGATTATGGTGGGAGGACAGG
CACGGGTGCTGATGCGGGGGGGATAG
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