mRNA_F-serratus_M_contig1389.2797.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1389.2797.1
Unique NamemRNA_F-serratus_M_contig1389.2797.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1389.2797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1389contigF-serratus_M_contig1389:248707..249123 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size195
Cds size114
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1389.2797.1prot_F-serratus_M_contig1389.2797.1Fucus serratus malepolypeptideF-serratus_M_contig1389 248734..249069 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929364.6483536-UTR-F-serratus_M_contig1389:248706..2487331622929364.6483536-UTR-F-serratus_M_contig1389:248706..248733Fucus serratus maleUTRF-serratus_M_contig1389 248707..248733 -
1690962817.6829095-UTR-F-serratus_M_contig1389:248706..2487331690962817.6829095-UTR-F-serratus_M_contig1389:248706..248733Fucus serratus maleUTRF-serratus_M_contig1389 248707..248733 -
1622929364.699137-UTR-F-serratus_M_contig1389:249069..2491231622929364.699137-UTR-F-serratus_M_contig1389:249069..249123Fucus serratus maleUTRF-serratus_M_contig1389 249070..249123 -
1690962817.7215154-UTR-F-serratus_M_contig1389:249069..2491231690962817.7215154-UTR-F-serratus_M_contig1389:249069..249123Fucus serratus maleUTRF-serratus_M_contig1389 249070..249123 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929364.6661184-CDS-F-serratus_M_contig1389:248733..2488161622929364.6661184-CDS-F-serratus_M_contig1389:248733..248816Fucus serratus maleCDSF-serratus_M_contig1389 248734..248816 -
1690962817.6988208-CDS-F-serratus_M_contig1389:248733..2488161690962817.6988208-CDS-F-serratus_M_contig1389:248733..248816Fucus serratus maleCDSF-serratus_M_contig1389 248734..248816 -
1622929364.682583-CDS-F-serratus_M_contig1389:249038..2490691622929364.682583-CDS-F-serratus_M_contig1389:249038..249069Fucus serratus maleCDSF-serratus_M_contig1389 249039..249069 -
1690962817.7112758-CDS-F-serratus_M_contig1389:249038..2490691690962817.7112758-CDS-F-serratus_M_contig1389:249038..249069Fucus serratus maleCDSF-serratus_M_contig1389 249039..249069 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1389.2797.1

>prot_F-serratus_M_contig1389.2797.1 ID=prot_F-serratus_M_contig1389.2797.1|Name=mRNA_F-serratus_M_contig1389.2797.1|organism=Fucus serratus male|type=polypeptide|length=38bp
MRLAQYLPSASGALAQVIKFLLLPTGNTSPYNLLNCS*
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mRNA from alignment at F-serratus_M_contig1389:248707..249123-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1389.2797.1 ID=mRNA_F-serratus_M_contig1389.2797.1|Name=mRNA_F-serratus_M_contig1389.2797.1|organism=Fucus serratus male|type=mRNA|length=417bp|location=Sequence derived from alignment at F-serratus_M_contig1389:248707..249123- (Fucus serratus male)
ACGTCATTAGACTATGGGCGCAATTATCCTATAATAGGCAACCGCCGTAT
ACGAATGCGCCTGGCGCAATATCTCCCAAGCGCGAGTGTAGTGTTGACGA
AGTAAGGATTTACTAATCACCTTGCCTACACGAACACCCTCCCCGATTCG
AAACATCCTTACTGATGCGTTAGAAATCAGGGGCACTCAAAAACAACAAC
GAAGGGAAACCCAGCTACTAGATAAAAACCCTCCGTTCCTTCCCAAGTCC
TTTAGGGTACCAGGTAAACCAACGTCTACTGGTATGACAGACGCTCAATC
TCGACAGGTGGAGCGCTTGCTCAGGTCATAAAATTTTTGCTACTCCCTAC
AGGTAACACCTCTCCCTACAACTTGCTTAATTGCAGTTAGCATCTGGGGT
GGACCAACGACCCGCGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1389:248707..249123-

>mRNA_F-serratus_M_contig1389.2797.1 ID=mRNA_F-serratus_M_contig1389.2797.1|Name=mRNA_F-serratus_M_contig1389.2797.1|organism=Fucus serratus male|type=CDS|length=228bp|location=Sequence derived from alignment at F-serratus_M_contig1389:248707..249123- (Fucus serratus male)
ATGCGCCTGGCGCAATATCTCCCAAGCGCGAATGCGCCTGGCGCAATATC
TCCCAAGCGCGAGTGGAGCGCTTGCTCAGGTCATAAAATTTTTGCTACTC
CCTACAGGTAACACCTCTCCCTACAACTTGCTTAATTGCAGTTAGGTGGA
GCGCTTGCTCAGGTCATAAAATTTTTGCTACTCCCTACAGGTAACACCTC
TCCCTACAACTTGCTTAATTGCAGTTAG
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