mRNA_F-serratus_M_contig1385.2780.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1385.2780.1
Unique NamemRNA_F-serratus_M_contig1385.2780.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1385.2780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1385contigF-serratus_M_contig1385:26480..26885 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size406
Cds size405
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929362.2362947-CDS-F-serratus_M_contig1385:26479..268841622929362.2362947-CDS-F-serratus_M_contig1385:26479..26884Fucus serratus maleCDSF-serratus_M_contig1385 26480..26884 +
1690962816.5589495-CDS-F-serratus_M_contig1385:26479..268841690962816.5589495-CDS-F-serratus_M_contig1385:26479..26884Fucus serratus maleCDSF-serratus_M_contig1385 26480..26884 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1385.2780.1prot_F-serratus_M_contig1385.2780.1Fucus serratus malepolypeptideF-serratus_M_contig1385 26480..26884 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1385.2780.1

>prot_F-serratus_M_contig1385.2780.1 ID=prot_F-serratus_M_contig1385.2780.1|Name=mRNA_F-serratus_M_contig1385.2780.1|organism=Fucus serratus male|type=polypeptide|length=135bp
QSSSGAAEPTYIYIQPAPAATTAPAPAPVSAPDAPPAPPQNPAEPIRDRV
VRELGEEGEVRMPGRTRGQTRAILESQHSMGLMSHAALAQGLATREAFDE
AFRDYELSPPLAELPTAPASDVHTPSTVAEADLSE
back to top

mRNA from alignment at F-serratus_M_contig1385:26480..26885+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1385.2780.1 ID=mRNA_F-serratus_M_contig1385.2780.1|Name=mRNA_F-serratus_M_contig1385.2780.1|organism=Fucus serratus male|type=mRNA|length=406bp|location=Sequence derived from alignment at F-serratus_M_contig1385:26480..26885+ (Fucus serratus male)
CAGTCGTCATCTGGTGCCGCAGAACCGACCTACATTTATATTCAGCCGGC
TCCTGCCGCCACCACTGCACCCGCTCCCGCGCCGGTATCTGCACCTGACG
CCCCACCCGCTCCGCCACAAAACCCGGCCGAACCAATCCGTGATCGCGTT
GTTCGGGAGCTGGGAGAAGAGGGCGAAGTACGTATGCCTGGTCGCACGCG
GGGTCAGACGCGAGCGATTCTGGAGTCTCAACACAGCATGGGCCTGATGT
CCCACGCCGCTTTGGCGCAAGGACTAGCTACCCGCGAGGCGTTCGACGAG
GCCTTTCGGGACTACGAACTGTCGCCGCCCCTTGCTGAACTTCCGACTGC
CCCCGCCAGTGACGTGCATACACCATCTACCGTTGCCGAGGCGGACTTAT
CGGAGC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1385:26480..26885+

>mRNA_F-serratus_M_contig1385.2780.1 ID=mRNA_F-serratus_M_contig1385.2780.1|Name=mRNA_F-serratus_M_contig1385.2780.1|organism=Fucus serratus male|type=CDS|length=810bp|location=Sequence derived from alignment at F-serratus_M_contig1385:26480..26885+ (Fucus serratus male)
CAGTCGTCATCTGGTGCCGCAGAACCGACCTACATTTATATTCAGCCGGC
TCCTGCCGCCACCACTGCACCCGCTCCCGCGCCGGTATCTGCACCTGACG
CCCCACCCGCTCCGCCACAAAACCCGGCCGAACCAATCCGTGATCGCGTT
GTTCGGGAGCTGGGAGAAGAGGGCGAAGTACGTATGCCTGGTCGCACGCG
GGGTCAGACGCGAGCGATTCTGGAGTCTCAACACAGCATGGGCCTGATGT
CCCACGCCGCTTTGGCGCAAGGACTAGCTACCCGCGAGGCGTTCGACGAG
GCCTTTCGGGACTACGAACTGTCGCCGCCCCTTGCTGAACTTCCGACTGC
CCCCGCCAGTGACGTGCATACACCATCTACCGTTGCCGAGGCGGACTTAT
CGGAGCAGTCGTCATCTGGTGCCGCAGAACCGACCTACATTTATATTCAG
CCGGCTCCTGCCGCCACCACTGCACCCGCTCCCGCGCCGGTATCTGCACC
TGACGCCCCACCCGCTCCGCCACAAAACCCGGCCGAACCAATCCGTGATC
GCGTTGTTCGGGAGCTGGGAGAAGAGGGCGAAGTACGTATGCCTGGTCGC
ACGCGGGGTCAGACGCGAGCGATTCTGGAGTCTCAACACAGCATGGGCCT
GATGTCCCACGCCGCTTTGGCGCAAGGACTAGCTACCCGCGAGGCGTTCG
ACGAGGCCTTTCGGGACTACGAACTGTCGCCGCCCCTTGCTGAACTTCCG
ACTGCCCCCGCCAGTGACGTGCATACACCATCTACCGTTGCCGAGGCGGA
CTTATCGGAG
back to top