mRNA_F-serratus_M_contig1384.2776.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1384.2776.1
Unique NamemRNA_F-serratus_M_contig1384.2776.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1384.2776.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1384contigF-serratus_M_contig1384:194267..194614 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size185
Cds size156
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1384.2776.1prot_F-serratus_M_contig1384.2776.1Fucus serratus malepolypeptideF-serratus_M_contig1384 194267..194586 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929362.1020024-CDS-F-serratus_M_contig1384:194266..1943261622929362.1020024-CDS-F-serratus_M_contig1384:194266..194326Fucus serratus maleCDSF-serratus_M_contig1384 194267..194326 -
1690962816.512819-CDS-F-serratus_M_contig1384:194266..1943261690962816.512819-CDS-F-serratus_M_contig1384:194266..194326Fucus serratus maleCDSF-serratus_M_contig1384 194267..194326 -
1622929362.117166-CDS-F-serratus_M_contig1384:194490..1945861622929362.117166-CDS-F-serratus_M_contig1384:194490..194586Fucus serratus maleCDSF-serratus_M_contig1384 194491..194586 -
1690962816.5236323-CDS-F-serratus_M_contig1384:194490..1945861690962816.5236323-CDS-F-serratus_M_contig1384:194490..194586Fucus serratus maleCDSF-serratus_M_contig1384 194491..194586 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929362.132781-UTR-F-serratus_M_contig1384:194586..1946141622929362.132781-UTR-F-serratus_M_contig1384:194586..194614Fucus serratus maleUTRF-serratus_M_contig1384 194587..194614 -
1690962816.5334003-UTR-F-serratus_M_contig1384:194586..1946141690962816.5334003-UTR-F-serratus_M_contig1384:194586..194614Fucus serratus maleUTRF-serratus_M_contig1384 194587..194614 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1384.2776.1

>prot_F-serratus_M_contig1384.2776.1 ID=prot_F-serratus_M_contig1384.2776.1|Name=mRNA_F-serratus_M_contig1384.2776.1|organism=Fucus serratus male|type=polypeptide|length=52bp
MVQASSALSHAIRSPSFCDREITTLDMLSKDVVYATHKVLGRPAAKQTSH
AL
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mRNA from alignment at F-serratus_M_contig1384:194267..194614-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1384.2776.1 ID=mRNA_F-serratus_M_contig1384.2776.1|Name=mRNA_F-serratus_M_contig1384.2776.1|organism=Fucus serratus male|type=mRNA|length=348bp|location=Sequence derived from alignment at F-serratus_M_contig1384:194267..194614- (Fucus serratus male)
AGACGGTACCAGGCGGGCGCTCTTGGAAATGGTGCAGGCTTCTTCCGCGC
TGTCTCACGCTATCCGGTCTCCGTCATTCTGCGACAGAGAAATAACGACG
TTGGATATGTTATCTAAAGACGTGGTGAGCTGCATTTGGGTAAGAGTTAT
CTAGAGTTTTGCTCTTGTAAGTTTACGATATATATGCATTACTATAAAAC
TGATTGCGTCGGACGGCCCCCGTTCTTGACATAGCACGGCATCAGTTTGC
GTACCCCGTGGAATCTTGAACTCGGCACCACCGATAAGGTTTACGCAACT
CACAAGGTACTGGGGAGACCGGCGGCGAAGCAGACGTCGCATGCCTTA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1384:194267..194614-

>mRNA_F-serratus_M_contig1384.2776.1 ID=mRNA_F-serratus_M_contig1384.2776.1|Name=mRNA_F-serratus_M_contig1384.2776.1|organism=Fucus serratus male|type=CDS|length=312bp|location=Sequence derived from alignment at F-serratus_M_contig1384:194267..194614- (Fucus serratus male)
ATGGTGCAGGCTTCTTCCGCGCTGTCTCACGCTATCCGGTCTCCGTCATT
CTGCGACAGAGAAATAACGACGTTGGATATGTTATCTAAAGACGTGATGG
TGCAGGCTTCTTCCGCGCTGTCTCACGCTATCCGGTCTCCGTCATTCTGC
GACAGAGAAATAACGACGTTGGATATGTTATCTAAAGACGTGGTTTACGC
AACTCACAAGGTACTGGGGAGACCGGCGGCGAAGCAGACGTCGCATGCCT
TAGTTTACGCAACTCACAAGGTACTGGGGAGACCGGCGGCGAAGCAGACG
TCGCATGCCTTA
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