mRNA_F-serratus_M_contig138.2756.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig138.2756.1
Unique NamemRNA_F-serratus_M_contig138.2756.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig138.2756.1 vs. uniprot
Match: K8ZBR0_NANGC (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8ZBR0_NANGC)

HSP 1 Score: 77.0 bits (188), Expect = 3.870e-14
Identity = 34/56 (60.71%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:   67 PEEGLYEESRVHENLVWRREVSRGRGLYNGGSTCFLNATLQCLAFLPPLAQHFLEE 234
            PE+G++ ES++H  + W R    G GLYN G+TCFLNATLQCLA+LPPLAQ+FL +
Sbjct:  112 PEKGIFPESKIHPLMTWIRVERVGPGLYNLGNTCFLNATLQCLAYLPPLAQYFLSK 167
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BLAST of mRNA_F-serratus_M_contig138.2756.1 vs. uniprot
Match: A0A4D9CS17_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CS17_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 4.120e-14
Identity = 34/56 (60.71%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:   67 PEEGLYEESRVHENLVWRREVSRGRGLYNGGSTCFLNATLQCLAFLPPLAQHFLEE 234
            PE+G++ ES++H  + W R    G GLYN G+TCFLNATLQCLA+LPPLAQ+FL +
Sbjct:  112 PEKGIFPESKIHPLMTWIRVERVGPGLYNLGNTCFLNATLQCLAYLPPLAQYFLSK 167
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BLAST of mRNA_F-serratus_M_contig138.2756.1 vs. uniprot
Match: W7TEV7_9STRA (Ubiquitin carboxyl-terminal hydrolase 36 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TEV7_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 4.120e-14
Identity = 34/56 (60.71%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:   67 PEEGLYEESRVHENLVWRREVSRGRGLYNGGSTCFLNATLQCLAFLPPLAQHFLEE 234
            PE+G++ ES++H  + W R    G GLYN G+TCFLNATLQCLA+LPPLAQ+FL +
Sbjct:  112 PEKGIFPESKIHPLMTWIRVERVGPGLYNLGNTCFLNATLQCLAYLPPLAQYFLSK 167
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BLAST of mRNA_F-serratus_M_contig138.2756.1 vs. uniprot
Match: A0A6H5JJN5_9PHAE (USP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJN5_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.740e-12
Identity = 47/116 (40.52%), Postives = 64/116 (55.17%), Query Frame = 1 
Query:    7 VTGGRRTSTLIKRAEEVVGLPEEG--LYEESRVHENLVWRREVSRGRGLYNGGSTCFLNATLQCLAFLPPLAQHFLEEDYKAMP---ASSSKTSVGKRQQAPSRDVLVIVGNLIKQ 339
            V GG     L + AE+ +GLP  G  LY +S++   L W++    G GL N G+TCFLNATLQCL++LPPLAQH L   Y   P   AS     +G  ++    ++L  +    KQ
Sbjct:  223 VAGG--VDDLARLAEKKIGLPPPGKELYLDSKIKACLQWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLNGFYGHGPQGIASRGPRPMGGFREFTKVEILAAMEQHTKQ 336
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BLAST of mRNA_F-serratus_M_contig138.2756.1 vs. uniprot
Match: A0A6H5JKG0_9PHAE (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKG0_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 2.320e-12
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = 1 
Query:   19 RRTSTLIKRAEEVVGLP--EEGLYEESRVHENLVWRREVSRGRGLYNGGSTCFLNATLQCLAFLPPLAQHFLEEDY 240
            R    L +RAE+ + LP  ++ LY ES+V  NL WR     G GL N G+TC+LN+ LQCL+++PPLAQH L   Y
Sbjct:   92 RDIDELARRAEKDIRLPTKQQELYPESQVRPNLTWRWPCQIGVGLENMGNTCYLNSILQCLSYVPPLAQHLLNGGY 167
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BLAST of mRNA_F-serratus_M_contig138.2756.1 vs. uniprot
Match: D8LD98_ECTSI (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD98_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 3.140e-12
Identity = 37/76 (48.68%), Postives = 48/76 (63.16%), Query Frame = 1 
Query:   19 RRTSTLIKRAEEVVGLP--EEGLYEESRVHENLVWRREVSRGRGLYNGGSTCFLNATLQCLAFLPPLAQHFLEEDY 240
            R    L + AE+ + LP  E+ LY ES+V  NL WR     G GL N G+TC+LN+ LQCL+++PPLAQH L   Y
Sbjct:   92 RDIEELARHAEKDIRLPTKEQELYPESQVRPNLTWRWPCQIGVGLENMGNTCYLNSILQCLSYVPPLAQHLLNGSY 167
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BLAST of mRNA_F-serratus_M_contig138.2756.1 vs. uniprot
Match: A0A7S2Y1N8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1N8_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 5.240e-9
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 1 
Query:   49 EEVVGLP--EEGLYEESRVHENLVWRREVSR-GRGLYNGGSTCFLNATLQCLAFLPPLAQHFL 228
            E+ VGLP   + +++    +E L W+    R G GLYN G++C+LNATLQCLA++PPLAQH L
Sbjct:   18 EQEVGLPPPSKSIFQLDPFYEWLQWKGGPRRPGPGLYNLGNSCYLNATLQCLAYVPPLAQHLL 80
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BLAST of mRNA_F-serratus_M_contig138.2756.1 vs. uniprot
Match: A0A835YLY7_9STRA (USP domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLY7_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 8.220e-9
Identity = 31/60 (51.67%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:  109 LVWRREVSRGRGLYNGGSTCFLNATLQCLAFLPPLAQHFLEEDYKAMPASSSKTSVGKRQ 288
            L WR     G GL N G+TCFLNATLQCL + PPL QH L   Y A PA++ +   G+ Q
Sbjct:    1 LEWRELSKVGPGLQNLGNTCFLNATLQCLLYCPPLVQHLLNHKYGA-PAAAQQAHHGRAQ 59
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BLAST of mRNA_F-serratus_M_contig138.2756.1 vs. uniprot
Match: S4RIA5_PETMA (USP domain-containing protein n=5 Tax=Petromyzon marinus TaxID=7757 RepID=S4RIA5_PETMA)

HSP 1 Score: 58.2 bits (139), Expect = 1.310e-8
Identity = 24/45 (53.33%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:  106 NLVWRREVSRGRGLYNGGSTCFLNATLQCLAFLPPLAQHFLEEDY 240
            +L W  +V +G GL N G+TCFLNATLQCLA+ PPL  + L +++
Sbjct:    1 SLRWENDVGKGAGLRNLGNTCFLNATLQCLAYTPPLVNYLLLQEH 45
[Close]
BLAST of mRNA_F-serratus_M_contig138.2756.1 vs. uniprot
Match: S4RZI2_PETMA (USP domain-containing protein n=1 Tax=Petromyzon marinus TaxID=7757 RepID=S4RZI2_PETMA)

HSP 1 Score: 58.2 bits (139), Expect = 1.310e-8
Identity = 24/45 (53.33%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:  106 NLVWRREVSRGRGLYNGGSTCFLNATLQCLAFLPPLAQHFLEEDY 240
            +L W  +V +G GL N G+TCFLNATLQCLA+ PPL  + L +++
Sbjct:    1 SLRWENDVGKGAGLRNLGNTCFLNATLQCLAYTPPLVNYLLLQEH 45
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig138.2756.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K8ZBR0_NANGC3.870e-1460.71Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Nann... [more]
A0A4D9CS17_9STRA4.120e-1460.71Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Nann... [more]
W7TEV7_9STRA4.120e-1460.71Ubiquitin carboxyl-terminal hydrolase 36 n=1 Tax=N... [more]
A0A6H5JJN5_9PHAE1.740e-1240.52USP domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5JKG0_9PHAE2.320e-1248.68Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ecto... [more]
D8LD98_ECTSI3.140e-1248.68Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ecto... [more]
A0A7S2Y1N8_9STRA5.240e-950.79Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A835YLY7_9STRA8.220e-951.67USP domain-containing protein (Fragment) n=1 Tax=T... [more]
S4RIA5_PETMA1.310e-853.33USP domain-containing protein n=5 Tax=Petromyzon m... [more]
S4RZI2_PETMA1.310e-853.33USP domain-containing protein n=1 Tax=Petromyzon m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig138contigF-serratus_M_contig138:705403..708757 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue3.1e-11
Seed eggNOG ortholog2880.D8LD97
KEGG koko:K11855
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0016787,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013,GO:0101005,GO:0140096
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsKOG1865@1,KOG1865@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Exons3
Model size341
Cds size339
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig138.2756.1prot_F-serratus_M_contig138.2756.1Fucus serratus malepolypeptideF-serratus_M_contig138 705403..708756 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929358.6389878-CDS-F-serratus_M_contig138:705402..7054771622929358.6389878-CDS-F-serratus_M_contig138:705402..705477Fucus serratus maleCDSF-serratus_M_contig138 705403..705477 +
1690962814.8377323-CDS-F-serratus_M_contig138:705402..7054771690962814.8377323-CDS-F-serratus_M_contig138:705402..705477Fucus serratus maleCDSF-serratus_M_contig138 705403..705477 +
1622929358.653758-CDS-F-serratus_M_contig138:707676..7078441622929358.653758-CDS-F-serratus_M_contig138:707676..707844Fucus serratus maleCDSF-serratus_M_contig138 707677..707844 +
1690962814.8498495-CDS-F-serratus_M_contig138:707676..7078441690962814.8498495-CDS-F-serratus_M_contig138:707676..707844Fucus serratus maleCDSF-serratus_M_contig138 707677..707844 +
1622929358.675135-CDS-F-serratus_M_contig138:708660..7087561622929358.675135-CDS-F-serratus_M_contig138:708660..708756Fucus serratus maleCDSF-serratus_M_contig138 708661..708756 +
1690962814.858932-CDS-F-serratus_M_contig138:708660..7087561690962814.858932-CDS-F-serratus_M_contig138:708660..708756Fucus serratus maleCDSF-serratus_M_contig138 708661..708756 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig138.2756.1

>prot_F-serratus_M_contig138.2756.1 ID=prot_F-serratus_M_contig138.2756.1|Name=mRNA_F-serratus_M_contig138.2756.1|organism=Fucus serratus male|type=polypeptide|length=113bp
ALVTGGRRTSTLIKRAEEVVGLPEEGLYEESRVHENLVWRREVSRGRGLY
NGGSTCFLNATLQCLAFLPPLAQHFLEEDYKAMPASSSKTSVGKRQQAPS
RDVLVIVGNLIKQ
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mRNA from alignment at F-serratus_M_contig138:705403..708757+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig138.2756.1 ID=mRNA_F-serratus_M_contig138.2756.1|Name=mRNA_F-serratus_M_contig138.2756.1|organism=Fucus serratus male|type=mRNA|length=3355bp|location=Sequence derived from alignment at F-serratus_M_contig138:705403..708757+ (Fucus serratus male)
GCCTTGGTCACAGGTGGACGAAGAACGTCCACGCTCATCAAGCGCGCTGA
GGAGGTTGTAGGGCTGCCGGAGGAGGTGAGGTTGAACGGCGCCGAACAAA
AATTCTCCTTAGGTCGCGATATTTACTGCTGTTTAGTGTGCTGCCAAACA
CGAGGTCTCATATTCGCTGGGTTTAACGCACTATTTAGACGAAACTCGTC
CGATACAACTTCATTTACAAACATCAGTGCATCAGATACTACCGTACAGG
CATTCATTGCAAGTACTATGTTGGTAATAATGGCCCCTGTGTCCCGAGCC
CCTGTGTCCCGCTGAATCTCGGTCTTATTCTTGCGTATCGGCACTATTAA
TACTAATATAATATTACTTCTTGCTCTGCGTGGTCTCTTGCCAAGACCAG
CGGACCCTGAAGCCATACAAGTAGATATGTCAGACTGTGGCGAATCCTGG
GGTATGCCGCCGGATTCGTGAGTCGTGCAAGGTACTGTAGATTACTATTA
ATACCTTCACATACCTGGAGTAGACACCGGTCGGCCCGGTAGCTCAGAAG
TAACCTCGTAAGCTGCTGACACGTTGGGACGTGAGTTCGAATCCCGGTAA
ACGGGACTTTATCTCACTAAATACGTACCAGGTATTATATATATATATAT
ACCTGGTATATATATATCCCAGCAAGTGGAGAATGATTAAATCGTTAGTA
CATAAAATTCAACTTCGCTGTCGACGAGGGAAAGGAATGGCTGAATTCTT
CTCGCGAGAAAAATGAAGACCCGCACCGCAGAAGGAAAGTGGTTGGAAAT
CCTGTGCGACCTTCCTCTTGTGTGACTCCGGCGGGTACGTCCAACGAACT
TGATGTCCAGAATAATTAAGAAAACACACACACACACACACACACACAAC
ACTGTACATGGTTGGGTCCTTCCTTCACCAGCGGCTGTTGTACTCGCTTT
CTACTTTTTATGATAGCAACAAAGTCGGCCGGCAAACCCAACAGCACACC
ATGTACATGGTGCGTGTGCATAGCCACCATAACATACTATAGCAGACCAA
GCATCAACCGATATTCATATGGTTGCCAATTCTGCGCGTGGTTAGCTGAA
GTTTTTTCCTCTGTTCCCGTTCGCGTCTGAGACTCTAGTCTCGCGAGACA
GCTTCGGCCGTCCCGTCCCGCGCCAGCCTGCTCGTTCTCCTCACACACCC
AGGCTGAGTATGGTGCTTACTCACGGGTTCCTCTTGTTCCCGCTTTACAC
AACGGCGTTCATCTCTACCGTCAACCGCCATCGAGAGGGTCAGTCCCGAG
CTTATCCGGGTCACGCAATCACGTACCGATGGCGTTCACCAAGAGTCCGC
CGCACAGGGCCAGTATTAATAGTCCTCAAGGTAGCTCGAGAAACGGGTGC
TGTCTATTCCGTCACCACCGTATGGACCATTTTTTGCCGTGTCCCCTCAT
TTCCCACACCCTATGTTGATACAATGGACATGTCGCCACCGCGAACAACT
CGAACCACTTCGCTCTCAGGAACTTTGAGCTAGCTTCATATTAACATAGT
CCCACGCCAATAGGTGCTAAGAAAGATCTGCTGCGCCTCGAGACCAGCAA
GGGTTTATGAAAATTTTGAACAGTAACGGAGGTCCCACCGACCAGAGCGG
AGAACTCTTAACCTGAGTAGAGGAGAGCTGTGCATAAGGATGTACACGGT
GAATTTTGGCTCAAAAACGGAAACCGGCGACAGATCGGGTCTCCTACCGT
TACTTCATTTTCAGCATCCCTGTTTTTTGGTAGAAACCCATTCCAATATA
TCCGTTTTTGGTCGCTGGCGAATAAAAAACGAAACAAAACTTTTCCTCCC
CCCCATGATATTTCGATCAAACTCCCTCGCCAACCCGCAAGTAAATCGTA
AACCGTCACTTCCATCGCAGTTTGACACTAATAATAATACAGAACTACAA
TAACAACCGTGTAACTTGACGAACGAGAGAGTCATGACACATCAAAGATA
CATACTGGAATATATTAGGAAGACCACGAGCAGGATTGGCAAGATCGGTT
GATCCATACTCTGTTGGGATGTTTACATACGGGTAGGAAGCCAACTGAAC
CTGGAGATCGCAGTCATGTTGGGATGTTTGGCGGGTACAGCATGAACCTA
CAGTATTAATATTACCCTGGTATCCGTTTTCCGCAGCATGCCGTCAAAGG
TAAACCCTGCATGGCGTTACCACAGCTGTAGACTCTGTAACCGTCAACTC
TTGTCGTTTCTGCAACTGTCTAAGGGCCTGTACGAGGAATCACGCGTCCA
CGAGAATCTGGTGTGGAGGCGCGAGGTATCCAGGGGACGGGGCCTCTACA
ACGGCGGAAGCACGTGCTTCCTGAACGCGACCCTGCAGTGCCTCGCCTTC
CTCCCGCCCCTCGCCCAGCACTTCCTCGAGGAAGACTACAAGGTAAAAGG
TGGCGGTAGTCATTACTATATTAGTGTTACGGTAGTAGACTAATGCAGAG
CGGACTATTAGTAGCGCAATGACGGGATGGCGATGGTGATAATTATGGCA
ATCGTTGTATAGCGCTATCATATGCCGTACAAGTAGTACGTAGTAATAGT
TATTTGATCATATTTAATATTAATAGTACGACCAAGTAAGTATCCATGGC
GTAAATACAGGCATTGGTAACACTGGATGTCTTCTGCGCGACGTACGTGG
CATGTTGACGATTTGGTGTGTGGTGTGCGCTGTGCGTACTGTTACTGTTT
TAAGTTGTTGTGCGCGTGCGCGATCAACGGCGGGCTATCGATCTACCGCT
CTTAGGGACACCTCGACACACACACCTTGCTCTAAATTACTATAATACCA
GTATGAATAGTCTCACGTTGTCAATCGTTTTGTGCCGTAAGACTCCGAAC
AGACTTTAACGTGCAGGTACGTCGTGTGAGCTGCTGCCCAGGAGGGCTCC
ATCGGGGTTCGATACCTTACCGGCACCACAAAAGCGCCACAACTAATATT
ACTCGTAGTATTAATAGGGGATGCACATCGCCCGCTTGATTCCCGCCCCT
TTTTACCCATTTTGCAGAGATGCAGTGGACGCTCAATAGGTGCGAGACAA
GGGCTTGGTCCATGTGGCGCCCGTCCCTATAGTTTCAACAATCCCCCCTT
AACACTTTATTTCCTCTAGGATTTTCCTAAACGTTTGGTTTTGTTCTCGT
CGCGCCACTCTGTGCTTGTGTCTGTATGTTGTGTGTTGTATATTTTGTGG
GGGAAAAGGCGATGCCCGCTAGCTCTAGCAAGACATCAGTGGGGAAGCGC
CAGCAAGCTCCATCAAGAGATGTGCTGGTGATCGTCGGTAACCTCATCAA
GCAGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig138:705403..708757+

>mRNA_F-serratus_M_contig138.2756.1 ID=mRNA_F-serratus_M_contig138.2756.1|Name=mRNA_F-serratus_M_contig138.2756.1|organism=Fucus serratus male|type=CDS|length=678bp|location=Sequence derived from alignment at F-serratus_M_contig138:705403..708757+ (Fucus serratus male)
GCCTTGGTCACAGGTGGACGAAGAACGTCCACGCTCATCAAGCGCGCTGA
GGAGGTTGTAGGGCTGCCGGAGGAGGCCTTGGTCACAGGTGGACGAAGAA
CGTCCACGCTCATCAAGCGCGCTGAGGAGGTTGTAGGGCTGCCGGAGGAG
GGCCTGTACGAGGAATCACGCGTCCACGAGAATCTGGTGTGGAGGCGCGA
GGTATCCAGGGGACGGGGCCTCTACAACGGCGGAAGCACGTGCTTCCTGA
ACGCGACCCTGCAGTGCCTCGCCTTCCTCCCGCCCCTCGCCCAGCACTTC
CTCGAGGAAGACTACAAGGGCCTGTACGAGGAATCACGCGTCCACGAGAA
TCTGGTGTGGAGGCGCGAGGTATCCAGGGGACGGGGCCTCTACAACGGCG
GAAGCACGTGCTTCCTGAACGCGACCCTGCAGTGCCTCGCCTTCCTCCCG
CCCCTCGCCCAGCACTTCCTCGAGGAAGACTACAAGGCGATGCCCGCTAG
CTCTAGCAAGACATCAGTGGGGAAGCGCCAGCAAGCTCCATCAAGAGATG
TGCTGGTGATCGTCGGTAACCTCATCAAGCAGGCGATGCCCGCTAGCTCT
AGCAAGACATCAGTGGGGAAGCGCCAGCAAGCTCCATCAAGAGATGTGCT
GGTGATCGTCGGTAACCTCATCAAGCAG
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