mRNA_F-serratus_M_contig138.2753.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig138.2753.1
Unique NamemRNA_F-serratus_M_contig138.2753.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig138.2753.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.180e-21
Identity = 53/121 (43.80%), Postives = 70/121 (57.85%), Query Frame = 1
Query:    4 KKTDEQLSVKGQRFFVDVGGPMNHSSLGGNSYVVIFVDDCTRFKVVKFVKKKSNTTAALLSLIADYITPQKLSIKC----VRADNGGELEGAFQRELDRRSITHEHTPPDTPQYNGVTERA 354
            K TD + + K  R F+++GG M   S+GGN Y +I  DDCTR+  V F+K KS+  AA    +ADY   +  ++ C     R D GGE +G F     R  I  E TPP+TP+YNGV ERA
Sbjct:  184 KSTDTRAANKLFRLFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADY---RAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERA 301          
BLAST of mRNA_F-serratus_M_contig138.2753.1 vs. uniprot
Match: A0A6H5JM30_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM30_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 2.410e-18
Identity = 49/118 (41.53%), Postives = 63/118 (53.39%), Query Frame = 1
Query:    4 KKTDEQLSVKGQRFFVDVGGPMNHSSLGGNSYVVIFVDDCTRFKVVKFVKKKSNTTAALLSLIADYITPQ-KLSIKCVRADNGGELEGAFQRELDRRSITHEHTPPDTPQYNGVTERA 354
            K T  +   K  R ++D+GG M   S+GGN Y +I  DD +R+  V F+K KS+    L   +ADY T      +   R D GGE +G F     R  I  E TPP TP+YNGV ERA
Sbjct:  635 KSTSTRAVKKLFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGLEKFLADYRTKGVPCEVYIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERA 752          
BLAST of mRNA_F-serratus_M_contig138.2753.1 vs. uniprot
Match: A0A6H5KAM7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM7_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 4.280e-18
Identity = 49/118 (41.53%), Postives = 63/118 (53.39%), Query Frame = 1
Query:    4 KKTDEQLSVKGQRFFVDVGGPMNHSSLGGNSYVVIFVDDCTRFKVVKFVKKKSNTTAALLSLIADYITPQKLSIKCV-RADNGGELEGAFQRELDRRSITHEHTPPDTPQYNGVTERA 354
            K T  +   K  R ++D+GG M   S+GGN Y +I  DD +R+  V F+K KS+        +ADY T       C+ R D GGE +G F     R  I  E TPP TP+YNGV ERA
Sbjct:   11 KSTSTRAVKKLFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRTKGVPCEVCIARTDGGGEFQGQFAELCRRHGIKEEFTPPHTPKYNGVAERA 128          
BLAST of mRNA_F-serratus_M_contig138.2753.1 vs. uniprot
Match: A0A6H5KKB4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB4_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 8.120e-17
Identity = 45/100 (45.00%), Postives = 57/100 (57.00%), Query Frame = 1
Query:   67 MNHSSLGGNSYVVIFVDDCTRFKVVKFVKKKSNTTAALLSLIADYITPQKLSIKC----VRADNGGELEGAFQRELDRRSITHEHTPPDTPQYNGVTERA 354
            M   S+GGN Y +I  DDCTR+  V F+K KS+  AA    +ADY   +  ++ C     R D GGE +G F     R  I  E TPP+TP+YNGV ERA
Sbjct:    1 MQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEPYLADY---RAETVPCEVFVARTDGGGEFQGQFAEVCRRYGIKQEFTPPNTPKYNGVAERA 97          
BLAST of mRNA_F-serratus_M_contig138.2753.1 vs. uniprot
Match: A0A6H5JIN8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN8_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 2.400e-16
Identity = 50/120 (41.67%), Postives = 63/120 (52.50%), Query Frame = 1
Query:    4 KKTDEQLSVKGQRFFVDVGGPMNHSSLGGNSYVVIFVDDCTRFKVVKFVKKKSNTTAALLSLIADYIT---PQKLSIKCVRADNGGELEGAFQRELDRRSITHEHTPPDTPQYNGVTERA 354
            K T  +   K  R ++D+GG M   S+GGN Y +I  DDC+R+  V F    S+        +ADY T   P K+ I   R D GGE +G F     R  I  E TPP TP+YNGV ERA
Sbjct:  389 KSTSTRAVKKLFRVYLDLGGKMKTRSIGGNWYTLIIRDDCSRWTCVFFFNH-SDAAVGFEKSLADYRTKGVPCKVYI--ARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERA 505          
BLAST of mRNA_F-serratus_M_contig138.2753.1 vs. uniprot
Match: A0A6H5JAQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAQ2_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 2.550e-16
Identity = 46/109 (42.20%), Postives = 59/109 (54.13%), Query Frame = 1
Query:   40 RFFVDVGGPMNHSSLGGNSYVVIFVDDCTRFKVVKFVKKKSNTTAALLSLIADYITPQKLSIKC----VRADNGGELEGAFQRELDRRSITHEHTPPDTPQYNGVTERA 354
            R ++D+ G M   S+GGN Y +I  DD +R+  V F+K KS+        +ADY T     + C     RAD GGE +G F     R  I  E TPP TP+YNGV ERA
Sbjct:  702 RVYLDLEGTMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRTN---GVPCEDFIARADGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERA 807          
BLAST of mRNA_F-serratus_M_contig138.2753.1 vs. uniprot
Match: A0A8J6DA37_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6DA37_9ROSI)

HSP 1 Score: 83.2 bits (204), Expect = 3.370e-16
Identity = 48/118 (40.68%), Postives = 60/118 (50.85%), Query Frame = 1
Query:    1 PKKTDEQLSVKGQRFFVDVGGPMNHSSLGGNSYVVIFVDDCTRFKVVKFVKKKSNTTAALLSLIADYITPQKLSIKCVRADNGGELEGA-FQRELDRRSITHEHTPPDTPQYNGVTER 351
            P  T  + S K +    DV GPM   SL GN Y ++F+DDCTR+  V F+K KS      +   A   T     IK +R+DNG E   A FQ       I H+ T   TPQ NGV+ER
Sbjct:   37 PTNTSWRASTKLELVHTDVCGPMRTESLSGNRYFILFIDDCTRYCWVYFLKHKSEVVQVFMKFKAAVETETGCKIKTIRSDNGTEYTSAQFQALCKDAGIKHQLTNVYTPQQNGVSER 154          
BLAST of mRNA_F-serratus_M_contig138.2753.1 vs. uniprot
Match: A0A6H5KPZ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPZ8_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 6.200e-16
Identity = 49/120 (40.83%), Postives = 62/120 (51.67%), Query Frame = 1
Query:    4 KKTDEQLSVKGQRFFVDVGGPMNHSSLGGNSYVVIFVDDCTRFKVVKFVKKKSNTTAALLSLIADYIT---PQKLSIKCVRADNGGELEGAFQRELDRRSITHEHTPPDTPQYNGVTERA 354
            K T  +   K  R ++D+GG M   S+GGN Y +I  DD +R+  V F+K KS+        +ADY T   P K+ I   R D GGE +G F     R  I  E TPP TP Y  V ERA
Sbjct:  471 KSTSSRAVTKIFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRTEGVPCKVYI--ARTDGGGEFQGQFAEVCRRHGIKQELTPPHTPIYKDVAERA 588          
BLAST of mRNA_F-serratus_M_contig138.2753.1 vs. uniprot
Match: A0A8J5YZW8_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YZW8_9ROSI)

HSP 1 Score: 81.6 bits (200), Expect = 1.180e-15
Identity = 47/118 (39.83%), Postives = 60/118 (50.85%), Query Frame = 1
Query:    1 PKKTDEQLSVKGQRFFVDVGGPMNHSSLGGNSYVVIFVDDCTRFKVVKFVKKKSNTTAALLSLIADYITPQKLSIKCVRADNGGELEGA-FQRELDRRSITHEHTPPDTPQYNGVTER 351
            P  T  + S K +    DV GPM   SL GN Y ++F+DDCTR+  + F+K KS      +   A   T     IK +R+DNG E   A FQ       I H+ T   TPQ NGV+ER
Sbjct:  169 PTNTTWRASSKLELVHTDVCGPMRTESLSGNRYFILFIDDCTRYCWIYFLKHKSEVAQVFIKFKAAVETETGCKIKTIRSDNGTEYTSAQFQSLCKDAGIKHQLTNVYTPQQNGVSER 286          
BLAST of mRNA_F-serratus_M_contig138.2753.1 vs. uniprot
Match: A0A6H5KGJ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ8_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.350e-15
Identity = 43/118 (36.44%), Postives = 61/118 (51.69%), Query Frame = 1
Query:    4 KKTDEQLSVKGQRFFVDVGGPMNHSSLGGNSYVVIFVDDCTRFKVVKFVKKKSNTTAALLSLIADYITPQ-KLSIKCVRADNGGELEGAFQRELDRRSITHEHTPPDTPQYNGVTERA 354
            K T  +   K  R ++D+GG M   S+G + Y ++  DD +R+  V F+K KS+        + DY T +    +   R D+GGE +G F     R  I  E TPP TP+YN V ERA
Sbjct:  205 KSTSTRADKKLFRVYLDLGGKMKTRSIGDHWYTLMIRDDFSRWTRVFFLKHKSDAAVGFEKFLVDYRTKEVPCEVYITRTDDGGEFQGQFAEVFRRHGIKQEFTPPHTPKYNDVAERA 322          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig138.2753.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LL52_9PHAE1.180e-2143.80Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JM30_9PHAE2.410e-1841.53Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KAM7_9PHAE4.280e-1841.53Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KKB4_9PHAE8.120e-1745.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JIN8_9PHAE2.400e-1641.67Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JAQ2_9PHAE2.550e-1642.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8J6DA37_9ROSI3.370e-1640.68Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KPZ8_9PHAE6.200e-1640.83Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J5YZW8_9ROSI1.180e-1539.83Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KGJ8_9PHAE1.350e-1536.44Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig138contigF-serratus_M_contig138:343917..344270 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score81.3
Seed ortholog evalue3.4e-13
Seed eggNOG ortholog7425.NV18911-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,3SKEY@50557,41ZUZ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size354
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929358.234309-CDS-F-serratus_M_contig138:343916..3442701622929358.234309-CDS-F-serratus_M_contig138:343916..344270Fucus serratus maleCDSF-serratus_M_contig138 343917..344270 +
1690962814.6126847-CDS-F-serratus_M_contig138:343916..3442701690962814.6126847-CDS-F-serratus_M_contig138:343916..344270Fucus serratus maleCDSF-serratus_M_contig138 343917..344270 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig138.2753.1prot_F-serratus_M_contig138.2753.1Fucus serratus malepolypeptideF-serratus_M_contig138 343917..344270 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig138.2753.1

>prot_F-serratus_M_contig138.2753.1 ID=prot_F-serratus_M_contig138.2753.1|Name=mRNA_F-serratus_M_contig138.2753.1|organism=Fucus serratus male|type=polypeptide|length=118bp
PKKTDEQLSVKGQRFFVDVGGPMNHSSLGGNSYVVIFVDDCTRFKVVKFV
KKKSNTTAALLSLIADYITPQKLSIKCVRADNGGELEGAFQRELDRRSIT
HEHTPPDTPQYNGVTERA
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mRNA from alignment at F-serratus_M_contig138:343917..344270+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig138.2753.1 ID=mRNA_F-serratus_M_contig138.2753.1|Name=mRNA_F-serratus_M_contig138.2753.1|organism=Fucus serratus male|type=mRNA|length=354bp|location=Sequence derived from alignment at F-serratus_M_contig138:343917..344270+ (Fucus serratus male)
CCAAAGAAGACGGACGAACAGTTGAGCGTGAAAGGACAGCGATTCTTTGT TGACGTGGGCGGGCCGATGAACCACTCGAGTCTCGGCGGGAACAGCTACG TCGTCATTTTTGTGGACGACTGCACCCGCTTCAAGGTGGTAAAGTTTGTC AAGAAGAAGAGTAACACAACGGCCGCTCTCTTGTCTCTAATTGCAGATTA TATTACCCCGCAGAAGCTGTCGATCAAGTGCGTACGGGCGGATAATGGTG GCGAGTTGGAGGGAGCATTTCAGCGCGAACTGGACCGGCGCAGCATCACG CACGAGCATACCCCGCCAGACACGCCGCAGTATAACGGGGTGACCGAACG TGCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig138:343917..344270+

>mRNA_F-serratus_M_contig138.2753.1 ID=mRNA_F-serratus_M_contig138.2753.1|Name=mRNA_F-serratus_M_contig138.2753.1|organism=Fucus serratus male|type=CDS|length=708bp|location=Sequence derived from alignment at F-serratus_M_contig138:343917..344270+ (Fucus serratus male)
CCAAAGAAGACGGACGAACAGTTGAGCGTGAAAGGACAGCGATTCTTTGT
TGACGTGGGCGGGCCGATGAACCACTCGAGTCTCGGCGGGAACAGCTACG
TCGTCATTTTTGTGGACGACTGCACCCGCTTCAAGGTGGTAAAGTTTGTC
AAGAAGAAGAGTAACACAACGGCCGCTCTCTTGTCTCTAATTGCAGATTA
TATTACCCCGCAGAAGCTGTCGATCAAGTGCGTACGGGCGGATAATGGTG
GCGAGTTGGAGGGAGCATTTCAGCGCGAACTGGACCGGCGCAGCATCACG
CACGAGCATACCCCGCCAGACACGCCGCAGTATAACGGGGTGACCGAACG
TGCGCCAAAGAAGACGGACGAACAGTTGAGCGTGAAAGGACAGCGATTCT
TTGTTGACGTGGGCGGGCCGATGAACCACTCGAGTCTCGGCGGGAACAGC
TACGTCGTCATTTTTGTGGACGACTGCACCCGCTTCAAGGTGGTAAAGTT
TGTCAAGAAGAAGAGTAACACAACGGCCGCTCTCTTGTCTCTAATTGCAG
ATTATATTACCCCGCAGAAGCTGTCGATCAAGTGCGTACGGGCGGATAAT
GGTGGCGAGTTGGAGGGAGCATTTCAGCGCGAACTGGACCGGCGCAGCAT
CACGCACGAGCATACCCCGCCAGACACGCCGCAGTATAACGGGGTGACCG
AACGTGCG
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