mRNA_F-serratus_M_contig1379.2750.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1379.2750.1
Unique NamemRNA_F-serratus_M_contig1379.2750.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1379.2750.1 vs. uniprot
Match: A0A6H5L457_9PHAE (zf-Tim10_DDP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L457_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 5.840e-33
Identity = 59/77 (76.62%), Postives = 67/77 (87.01%), Query Frame = 1 
Query:    1 QRKDSLAMYNNLVFKCFDDCSRSFRSRRLDDSEAKCIGVCAEKFIKLTGRVARRFQDLQQQKAKEEQAAATAAGLQR 231
            QRKDSLAMYNNLVF+CFD+CS+SFRS+RLDD E KCI VCAEK+IKLT RVA RFQD+QQQKAK+E     AAG+QR
Sbjct:   17 QRKDSLAMYNNLVFRCFDECSKSFRSKRLDDGETKCINVCAEKYIKLTSRVALRFQDIQQQKAKDE-----AAGVQR 88
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BLAST of mRNA_F-serratus_M_contig1379.2750.1 vs. uniprot
Match: A0A388M117_CHABU (zf-Tim10_DDP domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388M117_CHABU)

HSP 1 Score: 67.8 bits (164), Expect = 3.800e-13
Identity = 30/58 (51.72%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:    1 QRKDSLAMYNNLVFKCFDDCSRSFRSRRLDDSEAKCIGVCAEKFIKLTGRVARRFQDL 174
            Q +DSL +YN LV +CF++C  SFR + LD +E  C+  C EKF+K TGRV+ RFQ++
Sbjct:   25 QMRDSLRLYNTLVERCFNNCVDSFRRKTLDKTEETCVKRCVEKFLKHTGRVSLRFQEI 82
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BLAST of mRNA_F-serratus_M_contig1379.2750.1 vs. uniprot
Match: A0A7S3RAD0_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3RAD0_DUNTE)

HSP 1 Score: 65.9 bits (159), Expect = 3.830e-12
Identity = 29/57 (50.88%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:    1 QRKDSLAMYNNLVFKCFDDCSRSFRSRRLDDSEAKCIGVCAEKFIKLTGRVARRFQD 171
            Q +DSL MYNNLV +CF +CS   RS+ L   E +C+  C EKF+ +TGRV  RF +
Sbjct:   31 QVRDSLKMYNNLVERCFRECSEDMRSKALSSKEEQCVVKCCEKFMNVTGRVGMRFSE 87
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BLAST of mRNA_F-serratus_M_contig1379.2750.1 vs. uniprot
Match: A0A1E5RJ12_HANUV (Mitochondrial import inner membrane translocase subunit TIM9 n=3 Tax=Hanseniaspora TaxID=29832 RepID=A0A1E5RJ12_HANUV)

HSP 1 Score: 64.7 bits (156), Expect = 5.620e-12
Identity = 29/57 (50.88%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:    1 QRKDSLAMYNNLVFKCFDDCSRSFRSRRLDDSEAKCIGVCAEKFIKLTGRVARRFQD 171
            Q KD + +Y+NLV KCF DC   F S +L++ E  CI  CAEKF+K + RV +RFQ+
Sbjct:   20 QMKDFMRLYSNLVEKCFSDCVEDFTSSKLNNRELTCISKCAEKFLKHSERVGKRFQE 76
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BLAST of mRNA_F-serratus_M_contig1379.2750.1 vs. uniprot
Match: M1VL90_CYAM1 (Mitochondrial intermembrane space complex subunit Tim9 n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VL90_CYAM1)

HSP 1 Score: 61.6 bits (148), Expect = 1.640e-10
Identity = 26/55 (47.27%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:    1 QRKDSLAMYNNLVFKCFDDCSRSFRSRRLDDSEAKCIGVCAEKFIKLTGRVARRF 165
            Q +DS+ +YN LV+ CF++C  SFRS +L+  E  C+  CA+KF+KL  R  +RF
Sbjct:   24 QIQDSMRLYNELVYLCFNNCVDSFRSSKLEAKEEACVTKCAQKFLKLAARAGQRF 78
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BLAST of mRNA_F-serratus_M_contig1379.2750.1 vs. uniprot
Match: UPI000711B320 (hypothetical protein n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000711B320)

HSP 1 Score: 60.1 bits (144), Expect = 3.530e-10
Identity = 26/57 (45.61%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:    7 KDSLAMYNNLVFKCFDDCSRSFRSRRLDDSEAKCIGVCAEKFIKLTGRVARRFQDLQ 177
            KD     N +V  CF DC+++FRS+ LD  E+ CI  CA K+++LT R+ RR+Q++Q
Sbjct:   19 KDMAVTANKVVEMCFRDCAKNFRSKELDKKESDCIRNCAGKYMELTNRIYRRYQEIQ 75
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BLAST of mRNA_F-serratus_M_contig1379.2750.1 vs. uniprot
Match: A0A0N5AWT9_9BILA (Zf-Tim10_DDP domain-containing protein n=1 Tax=Syphacia muris TaxID=451379 RepID=A0A0N5AWT9_9BILA)

HSP 1 Score: 54.3 bits (129), Expect = 6.770e-8
Identity = 24/57 (42.11%), Postives = 34/57 (59.65%), Query Frame = 1 
Query:    7 KDSLAMYNNLVFKCFDDCSRSFRSRRLDDSEAKCIGVCAEKFIKLTGRVARRFQDLQ 177
            KD L  YN++  +CF  C     +R + D E KC   C +KF+K+T R+A RFQ+ Q
Sbjct:   14 KDFLMQYNSVTEQCFGHCITDMTTRSVSDKEEKCASNCLDKFLKMTQRLALRFQEYQ 70
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BLAST of mRNA_F-serratus_M_contig1379.2750.1 vs. uniprot
Match: A0A0N4VBR2_ENTVE (Zf-Tim10_DDP domain-containing protein n=1 Tax=Enterobius vermicularis TaxID=51028 RepID=A0A0N4VBR2_ENTVE)

HSP 1 Score: 53.9 bits (128), Expect = 9.590e-8
Identity = 24/57 (42.11%), Postives = 35/57 (61.40%), Query Frame = 1 
Query:    7 KDSLAMYNNLVFKCFDDCSRSFRSRRLDDSEAKCIGVCAEKFIKLTGRVARRFQDLQ 177
            KD L  YNN+  +CF  C     +R +++ E KC   C +KF+K+T R+A RFQ+ Q
Sbjct:   14 KDFLIQYNNVTEQCFGHCITDMTTRTVNEREEKCATNCLDKFLKMTQRLALRFQEYQ 70
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BLAST of mRNA_F-serratus_M_contig1379.2750.1 vs. uniprot
Match: A0A1C7N2D5_9FUNG (Mitochondrial import inner membrane translocase subunit TIM9 n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7N2D5_9FUNG)

HSP 1 Score: 52.4 bits (124), Expect = 5.170e-7
Identity = 23/63 (36.51%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:    1 QRKDSLAMYNNLVFKCFDDCSRSFRSRRLDDSEAKCIGVCAEKFIKLTGRVARRFQDLQQQKA 189
            Q  D + M+  LV +CF +C+  F ++ +   E  C+  CAE+F+K +  V++RF +L QQ+A
Sbjct:   22 QMDDFVNMFTGLVDRCFKECANDFTTKAVTGKERTCVNKCAERFLKHSELVSKRFGELSQQQA 84
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BLAST of mRNA_F-serratus_M_contig1379.2750.1 vs. uniprot
Match: UPI0003C8D3C9 (mitochondrial import inner membrane translocase subunit Tim9-like isoform X1 n=2 Tax=Tupaia chinensis TaxID=246437 RepID=UPI0003C8D3C9)

HSP 1 Score: 47.4 bits (111), Expect = 3.860e-5
Identity = 26/73 (35.62%), Postives = 41/73 (56.16%), Query Frame = 1 
Query:    7 KDSLAMYNNLVFKCFDDCSRSFRSRRLDDSEAKCIGVCAEKFIKLTGRVARRFQDLQQQKAKEEQAAATAAGL 225
            ++ L  YN L   CF DC + F +R +   E  C     +K++K+T ++A RFQ+ Q Q   +++A A  AGL
Sbjct:   15 REFLGTYNKLTETCFWDCVKDFTTREVKPEEITCSEHFLQKYLKITQKIAMRFQENQGQ---QDEALAAKAGL 84
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1379.2750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5L457_9PHAE5.840e-3376.62zf-Tim10_DDP domain-containing protein n=2 Tax=Ect... [more]
A0A388M117_CHABU3.800e-1351.72zf-Tim10_DDP domain-containing protein n=1 Tax=Cha... [more]
A0A7S3RAD0_DUNTE3.830e-1250.88Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]
A0A1E5RJ12_HANUV5.620e-1250.88Mitochondrial import inner membrane translocase su... [more]
M1VL90_CYAM11.640e-1047.27Mitochondrial intermembrane space complex subunit ... [more]
UPI000711B3203.530e-1045.61hypothetical protein n=1 Tax=Blastocystis sp. subt... [more]
A0A0N5AWT9_9BILA6.770e-842.11Zf-Tim10_DDP domain-containing protein n=1 Tax=Syp... [more]
A0A0N4VBR2_ENTVE9.590e-842.11Zf-Tim10_DDP domain-containing protein n=1 Tax=Ent... [more]
A0A1C7N2D5_9FUNG5.170e-736.51Mitochondrial import inner membrane translocase su... [more]
UPI0003C8D3C93.860e-535.62mitochondrial import inner membrane translocase su... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1379contigF-serratus_M_contig1379:142682..143635 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.8
Seed ortholog evalue2.1e-21
Seed eggNOG ortholog2880.D7G6I8
Preferred nameTIMM9
KEGG koko:K17777,ko:K17779
KEGG TC3.A.8.1
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001666,GO:0003008,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0005758,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006950,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0007155,GO:0007160,GO:0007600,GO:0007605,GO:0008104,GO:0008150,GO:0008270,GO:0008320,GO:0008565,GO:0009628,GO:0009987,GO:0015031,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0017038,GO:0019866,GO:0022610,GO:0022804,GO:0022857,GO:0022884,GO:0031090,GO:0031224,GO:0031589,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032501,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034613,GO:0036293,GO:0036294,GO:0040008,GO:0040014,GO:0042221,GO:0042719,GO:0042721,GO:0042802,GO:0042803,GO:0042886,GO:0042887,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045039,GO:0045184,GO:0046872,GO:0046907,GO:0046914,GO:0046983,GO:0048638,GO:0050789,GO:0050793,GO:0050877,GO:0050896,GO:0050954,GO:0051082,GO:0051087,GO:0051179,GO:0051234,GO:0051239,GO:0051641,GO:0051649,GO:0051716,GO:0055085,GO:0061024,GO:0065002,GO:0065007,GO:0070013,GO:0070482,GO:0070585,GO:0070727,GO:0070887,GO:0071453,GO:0071456,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072321,GO:0072594,GO:0072655,GO:0072657,GO:0090150,GO:0090151,GO:0098796,GO:0098798,GO:0098800,GO:1904680,GO:1990351,GO:1990542
EggNOG free text desc.chaperone-mediated protein transport
EggNOG OGsKOG3479@1,KOG3479@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000,ko03029
Exons2
Model size234
Cds size213
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1379.2750.1prot_F-serratus_M_contig1379.2750.1Fucus serratus malepolypeptideF-serratus_M_contig1379 142682..143614 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929357.728442-CDS-F-serratus_M_contig1379:142681..1428491622929357.728442-CDS-F-serratus_M_contig1379:142681..142849Fucus serratus maleCDSF-serratus_M_contig1379 142682..142849 -
1690962814.4475744-CDS-F-serratus_M_contig1379:142681..1428491690962814.4475744-CDS-F-serratus_M_contig1379:142681..142849Fucus serratus maleCDSF-serratus_M_contig1379 142682..142849 -
1622929357.7479048-CDS-F-serratus_M_contig1379:143569..1436141622929357.7479048-CDS-F-serratus_M_contig1379:143569..143614Fucus serratus maleCDSF-serratus_M_contig1379 143570..143614 -
1690962814.4599962-CDS-F-serratus_M_contig1379:143569..1436141690962814.4599962-CDS-F-serratus_M_contig1379:143569..143614Fucus serratus maleCDSF-serratus_M_contig1379 143570..143614 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929357.7776842-UTR-F-serratus_M_contig1379:143614..1436351622929357.7776842-UTR-F-serratus_M_contig1379:143614..143635Fucus serratus maleUTRF-serratus_M_contig1379 143615..143635 -
1690962814.4698064-UTR-F-serratus_M_contig1379:143614..1436351690962814.4698064-UTR-F-serratus_M_contig1379:143614..143635Fucus serratus maleUTRF-serratus_M_contig1379 143615..143635 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1379.2750.1

>prot_F-serratus_M_contig1379.2750.1 ID=prot_F-serratus_M_contig1379.2750.1|Name=mRNA_F-serratus_M_contig1379.2750.1|organism=Fucus serratus male|type=polypeptide|length=71bp
MYNNLVFKCFDDCSRSFRSRRLDDSEAKCIGVCAEKFIKLTGRVARRFQD
LQQQKAKEEQAAATAAGLQR*
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mRNA from alignment at F-serratus_M_contig1379:142682..143635-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1379.2750.1 ID=mRNA_F-serratus_M_contig1379.2750.1|Name=mRNA_F-serratus_M_contig1379.2750.1|organism=Fucus serratus male|type=mRNA|length=954bp|location=Sequence derived from alignment at F-serratus_M_contig1379:142682..143635- (Fucus serratus male)
CAGAGGAAGGACTCGCTGGCGATGTACAACAATCTCGTTTTCAAGTGCTT
CGACGATTGCTCAAGGGTGAGCTGGGGGCGTTGAGACGCAAGGGCAAAAA
TACTTTGGAGGCGTTTTAATCCGTACGTGTCGCGCAGTGCACTACAATCT
GGAGTGGGAGAGCAGCAACAGCAGCCGCCGTGCAGTGTGCCGAGTTGGGT
CCACGGGCGAGACATGGATGCGAAGAGCGCTGACGTTTGTTTTTCTCCTT
ACCAGCAAGCTTCTCTGGTCTATAGGAACCTCGCTGTCACAAAACCCTCC
TATTAACAGTTAATAATAAACGAGACGGTGCAAGGCCATGCTGTTTCCGG
GGGGGAAGAAGTCCGTGTTTGAAGAAAAATATGAAGGCATCTAGACCTTC
TGGGCATTCTTCAATCAGGGGGAAAAAATGTTCTGTCGGTATTCGATCCA
CTAGGCAGTTCGTACCGCGGCGAGATGCAGCCATTTATTTTATTTTATTT
TTATTTTTTCACTTTGATGGCGACCACGGTTGGACGGAGCGCCCTTACGA
ACGTGGCGTCCACTGTGCCGTCTCCGAAATATTGCGCAGGTACCGTTTTC
TTGTATAGACATTTTGCTTATGGGTGCTTTGTACGTAGATATTTGAATGT
AGATATTTTTTTCACTAAGGAAAAAGCTTGGAGCCACTGTTCCTGTTCTC
GCGTCGACTTGAACCGTTCCTCCCGCCTCCGCGATCTCCCTCGCCTCGCC
TCGCCTTGCCGCCCCCCCCCCCCCCCAACGACCCAGAGCTTTCGAAGCAG
GCGGCTAGACGATAGCGAGGCCAAGTGCATCGGCGTCTGCGCCGAGAAGT
TCATCAAGCTGACGGGGAGGGTGGCGCGACGGTTCCAGGATCTCCAGCAG
CAAAAGGCCAAGGAAGAGCAAGCGGCAGCGACCGCGGCAGGATTACAACG
CTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1379:142682..143635-

>mRNA_F-serratus_M_contig1379.2750.1 ID=mRNA_F-serratus_M_contig1379.2750.1|Name=mRNA_F-serratus_M_contig1379.2750.1|organism=Fucus serratus male|type=CDS|length=426bp|location=Sequence derived from alignment at F-serratus_M_contig1379:142682..143635- (Fucus serratus male)
ATGTACAACAATCTCGTTTTCAAGTGCTTCGACGATTGCTCAAGGATGTA
CAACAATCTCGTTTTCAAGTGCTTCGACGATTGCTCAAGGAGCTTTCGAA
GCAGGCGGCTAGACGATAGCGAGGCCAAGTGCATCGGCGTCTGCGCCGAG
AAGTTCATCAAGCTGACGGGGAGGGTGGCGCGACGGTTCCAGGATCTCCA
GCAGCAAAAGGCCAAGGAAGAGCAAGCGGCAGCGACCGCGGCAGGATTAC
AACGCTGAAGCTTTCGAAGCAGGCGGCTAGACGATAGCGAGGCCAAGTGC
ATCGGCGTCTGCGCCGAGAAGTTCATCAAGCTGACGGGGAGGGTGGCGCG
ACGGTTCCAGGATCTCCAGCAGCAAAAGGCCAAGGAAGAGCAAGCGGCAG
CGACCGCGGCAGGATTACAACGCTGA
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