mRNA_F-serratus_M_contig1378.2747.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1378.2747.1
Unique NamemRNA_F-serratus_M_contig1378.2747.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1378.2747.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 2.990e-18
Identity = 55/113 (48.67%), Postives = 75/113 (66.37%), Query Frame = 3 
Query:  384 AKKPRVLSVMEQRRANRLAAAGSAGAAGDEAESGSGPSITHKVRVLQELTRYTAEGVELEEDGFSLPGFWRRRGSPKLSQATGEVIEEAAMPHLALLARLYHGVEATSCQAER 722
            A K + LS +E+RRA R+AAA + G      E  S PS T +V + +E+  Y AE  +L+ DGF++ G+W RRG+  +S  TG+V   A MP+LA +ARLY G+EATSCQAER
Sbjct:  466 APKKKKLSRLEERRAARVAAATTGGDETGSLEDQS-PSTTRRVLIEREVLVYLAENPQLDVDGFNVLGYWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAER 577
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BLAST of mRNA_F-serratus_M_contig1378.2747.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 3.380e-18
Identity = 55/113 (48.67%), Postives = 75/113 (66.37%), Query Frame = 3 
Query:  384 AKKPRVLSVMEQRRANRLAAAGSAGAAGDEAESGSGPSITHKVRVLQELTRYTAEGVELEEDGFSLPGFWRRRGSPKLSQATGEVIEEAAMPHLALLARLYHGVEATSCQAER 722
            A K + LS +E+RRA R+AAA + G      E  S PS T +V + +E+  Y AE  +L+ DGF++ G+W RRG+  +S  TG+V   A MP+LA +ARLY G+EATSCQAER
Sbjct:  661 APKKKKLSRLEERRAARVAAATTGGDETGSLEDQS-PSTTRRVLIEREVLVYLAENPQLDVDGFNVLGYWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAER 772
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BLAST of mRNA_F-serratus_M_contig1378.2747.1 vs. uniprot
Match: A0A6H5KJT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT6_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 5.220e-17
Identity = 51/113 (45.13%), Postives = 72/113 (63.72%), Query Frame = 3 
Query:  384 AKKPRVLSVMEQRRANRLAAAGSAGAAGDEAESGSGPSITHKVRVLQELTRYTAEGVELEEDGFSLPGFWRRRGSPKLSQATGEVIEEAAMPHLALLARLYHGVEATSCQAER 722
            A K + LS +E+RRA R+AAA   GA+G     GS  +   +V + +E+  Y AE  ++E D F++ GFW RRG+  +   TG V   A MP+LA +ARL+ G+EA+SCQAER
Sbjct:   85 ASKRKKLSRLEERRAARVAAASDGGASGSVQAQGS--ATNRRVLIEREVLVYLAETEQVEVDDFNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAER 195
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BLAST of mRNA_F-serratus_M_contig1378.2747.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 5.360e-16
Identity = 51/113 (45.13%), Postives = 72/113 (63.72%), Query Frame = 3 
Query:  384 AKKPRVLSVMEQRRANRLAAAGSAGAAGDEAESGSGPSITHKVRVLQELTRYTAEGVELEEDGFSLPGFWRRRGSPKLSQATGEVIEEAAMPHLALLARLYHGVEATSCQAER 722
            A K + LS +E+RRA R+AAA   GA+G     GS  +   +V + +E+  Y AE  ++E D F++ GFW RRG+  +   TG V   A MP+LA +ARL+ G+EA+SCQAER
Sbjct:  650 ASKRKKLSRLEERRAARVAAASDGGASGSVQAQGS--ATNRRVLIEREVLVYLAETEQVEVDDFNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAER 760
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BLAST of mRNA_F-serratus_M_contig1378.2747.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 3.180e-15
Identity = 58/117 (49.57%), Postives = 70/117 (59.83%), Query Frame = 3 
Query:  378 PLAKKPRVLSVMEQRRANRLAA--AGSAGAAGDEAESGSGPSITHKVRVLQELTRYTAEGVELEEDGFSLPGFWRRRGSPKLSQATGEVIEEAAMPHLALLARLYHGVEATSCQAER 722
            P  KK +VLS +E+RR  RLA   A SAG A   A S    +      V +EL  Y AE    EE  FSL  FW+RR  P+    TGEV  E  +PHLAL+ARL+HG+E+TSCQAER
Sbjct:  323 PAPKKQKVLSDLEERRLQRLAKSKAASAGRAAPAAVS----TARRGAIVERELRMYLAEDPAEEEYDFSLLEFWQRRSKPRTCAETGEV--EPGLPHLALIARLFHGIESTSCQAER 433
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BLAST of mRNA_F-serratus_M_contig1378.2747.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 4.300e-15
Identity = 58/117 (49.57%), Postives = 70/117 (59.83%), Query Frame = 3 
Query:  378 PLAKKPRVLSVMEQRRANRLAA--AGSAGAAGDEAESGSGPSITHKVRVLQELTRYTAEGVELEEDGFSLPGFWRRRGSPKLSQATGEVIEEAAMPHLALLARLYHGVEATSCQAER 722
            P  KK +VLS +E+RR  RLA   A SAG A   A S    +      V +EL  Y AE    EE  FSL  FW+RR  P+    TGEV  E  +PHLAL+ARL+HG+E+TSCQAER
Sbjct:  651 PAPKKQKVLSDLEERRLQRLAKSKAASAGRAAPAAVS----TARRGAIVERELRMYLAEDPAEEEYDFSLLEFWQRRSKPRTCAETGEV--EPGLPHLALIARLFHGIESTSCQAER 761
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1378.2747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JTB8_9PHAE2.990e-1848.67Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGG8_9PHAE3.380e-1848.67Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5KJT6_9PHAE5.220e-1745.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRT6_9PHAE5.360e-1645.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAN7_9PHAE3.180e-1549.57Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE4.300e-1549.57Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1378contigF-serratus_M_contig1378:26619..27579 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size961
Cds size573
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1378.2747.1prot_F-serratus_M_contig1378.2747.1Fucus serratus malepolypeptideF-serratus_M_contig1378 26891..27463 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929357.2635348-UTR-F-serratus_M_contig1378:26618..268901622929357.2635348-UTR-F-serratus_M_contig1378:26618..26890Fucus serratus maleUTRF-serratus_M_contig1378 26619..26890 +
1690962814.2342377-UTR-F-serratus_M_contig1378:26618..268901690962814.2342377-UTR-F-serratus_M_contig1378:26618..26890Fucus serratus maleUTRF-serratus_M_contig1378 26619..26890 +
1622929357.2914174-UTR-F-serratus_M_contig1378:27463..275791622929357.2914174-UTR-F-serratus_M_contig1378:27463..27579Fucus serratus maleUTRF-serratus_M_contig1378 27464..27579 +
1690962814.2648585-UTR-F-serratus_M_contig1378:27463..275791690962814.2648585-UTR-F-serratus_M_contig1378:27463..27579Fucus serratus maleUTRF-serratus_M_contig1378 27464..27579 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929357.2766738-CDS-F-serratus_M_contig1378:26890..274631622929357.2766738-CDS-F-serratus_M_contig1378:26890..27463Fucus serratus maleCDSF-serratus_M_contig1378 26891..27463 +
1690962814.2458928-CDS-F-serratus_M_contig1378:26890..274631690962814.2458928-CDS-F-serratus_M_contig1378:26890..27463Fucus serratus maleCDSF-serratus_M_contig1378 26891..27463 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1378.2747.1

>prot_F-serratus_M_contig1378.2747.1 ID=prot_F-serratus_M_contig1378.2747.1|Name=mRNA_F-serratus_M_contig1378.2747.1|organism=Fucus serratus male|type=polypeptide|length=191bp
MIGMCVGLVHEALLSQRFKTDQNRREARDSLVATGPLAKKPRVLSVMEQR
RANRLAAAGSAGAAGDEAESGSGPSITHKVRVLQELTRYTAEGVELEEDG
FSLPGFWRRRGSPKLSQATGEVIEEAAMPHLALLARLYHGVEATSCQAER
KLFCSRSAHRQHAVENGRVQGGTDDVPETEPEVYTGDCGV*
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mRNA from alignment at F-serratus_M_contig1378:26619..27579+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1378.2747.1 ID=mRNA_F-serratus_M_contig1378.2747.1|Name=mRNA_F-serratus_M_contig1378.2747.1|organism=Fucus serratus male|type=mRNA|length=961bp|location=Sequence derived from alignment at F-serratus_M_contig1378:26619..27579+ (Fucus serratus male)
CTTACCATGGACATAAACAGAAGTCTACAGCGGTAATTCATCCTCAGTCT
GAGTAATTGTGGAGGCGACTGCTGAGGGTATACTGTACAATGGTTGTCAC
AATGACATCAGGTTGTCCATCGATTATACAAATATAAAATATACCAGAAA
TACTGCATGTAGTAGAACACACAGCAGTTGTCACTACATAGGTACAGGAG
CATAGATATACTTTATATTTTGGCGACAAATCCCGACTGTGGTATGCATA
GGAGTATTGTACTTGTCAGTGGATGATTGGTATGTGTGTAGGGTTGGTGC
ATGAAGCACTTCTGAGCCAAAGGTTCAAGACAGACCAAAACCGTCGAGAG
GCTCGGGACAGCCTGGTGGCAACGGGGCCACTGGCAAAGAAGCCGCGGGT
GCTCTCCGTTATGGAGCAGCGACGCGCCAACAGACTGGCTGCCGCTGGGA
GTGCGGGTGCCGCTGGAGATGAGGCGGAGAGCGGCTCGGGGCCAAGCATC
ACGCACAAGGTCCGTGTTCTCCAAGAGCTGACGAGGTATACAGCAGAAGG
GGTGGAGCTGGAAGAGGACGGATTTTCCTTGCCGGGGTTTTGGCGGCGAA
GGGGCTCCCCTAAGCTTTCCCAAGCGACAGGCGAGGTTATCGAGGAAGCG
GCTATGCCGCATCTCGCACTCCTCGCACGCCTTTACCACGGGGTCGAGGC
CACGAGCTGCCAGGCTGAGCGGAAACTTTTCTGCTCTCGCTCTGCTCATC
GGCAACATGCGGTCGAGAATGGGCGCGTTCAAGGTGGAACAGATGATGTT
CCTGAGACTGAACCAGAGGTATATACCGGAGATTGCGGCGTATAACAGGG
TTATTGACAGGCAGCAGGCGCGCCGAAACCAGTGCAGAGAGGACACTGGC
AAGGCACAGAACGAGGCGGCCGGCGATTTGATTGAGATCGACCTGTAGAT
GATGGTGACTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1378:26619..27579+

>mRNA_F-serratus_M_contig1378.2747.1 ID=mRNA_F-serratus_M_contig1378.2747.1|Name=mRNA_F-serratus_M_contig1378.2747.1|organism=Fucus serratus male|type=CDS|length=1146bp|location=Sequence derived from alignment at F-serratus_M_contig1378:26619..27579+ (Fucus serratus male)
ATGATTGGTATGTGTGTAGGGTTGGTGCATGAAGCACTTCTGAGCCAAAG
GTTCAAGACAGACCAAAACCGTCGAGAGGCTCGGGACAGCCTGGTGGCAA
CGGGGCCACTGGCAAAGAAGCCGCGGGTGCTCTCCGTTATGGAGCAGCGA
CGCGCCAACAGACTGGCTGCCGCTGGGAGTGCGGGTGCCGCTGGAGATGA
GGCGGAGAGCGGCTCGGGGCCAAGCATCACGCACAAGGTCCGTGTTCTCC
AAGAGCTGACGAGGTATACAGCAGAAGGGGTGGAGCTGGAAGAGGACGGA
TTTTCCTTGCCGGGGTTTTGGCGGCGAAGGGGCTCCCCTAAGCTTTCCCA
AGCGACAGGCGAGGTTATCGAGGAAGCGGCTATGCCGCATCTCGCACTCC
TCGCACGCCTTTACCACGGGGTCGAGGCCACGAGCTGCCAGGCTGAGCGG
AAACTTTTCTGCTCTCGCTCTGCTCATCGGCAACATGCGGTCGAGAATGG
GCGCGTTCAAGGTGGAACAGATGATGTTCCTGAGACTGAACCAGAGGTAT
ATACCGGAGATTGCGGCGTATAAATGATTGGTATGTGTGTAGGGTTGGTG
CATGAAGCACTTCTGAGCCAAAGGTTCAAGACAGACCAAAACCGTCGAGA
GGCTCGGGACAGCCTGGTGGCAACGGGGCCACTGGCAAAGAAGCCGCGGG
TGCTCTCCGTTATGGAGCAGCGACGCGCCAACAGACTGGCTGCCGCTGGG
AGTGCGGGTGCCGCTGGAGATGAGGCGGAGAGCGGCTCGGGGCCAAGCAT
CACGCACAAGGTCCGTGTTCTCCAAGAGCTGACGAGGTATACAGCAGAAG
GGGTGGAGCTGGAAGAGGACGGATTTTCCTTGCCGGGGTTTTGGCGGCGA
AGGGGCTCCCCTAAGCTTTCCCAAGCGACAGGCGAGGTTATCGAGGAAGC
GGCTATGCCGCATCTCGCACTCCTCGCACGCCTTTACCACGGGGTCGAGG
CCACGAGCTGCCAGGCTGAGCGGAAACTTTTCTGCTCTCGCTCTGCTCAT
CGGCAACATGCGGTCGAGAATGGGCGCGTTCAAGGTGGAACAGATGATGT
TCCTGAGACTGAACCAGAGGTATATACCGGAGATTGCGGCGTATAA
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