mRNA_F-serratus_M_contig1376.2742.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1376.2742.1
Unique NamemRNA_F-serratus_M_contig1376.2742.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1376.2742.1 vs. uniprot
Match: D8LUC5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUC5_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 1.520e-32
Identity = 75/125 (60.00%), Postives = 90/125 (72.00%), Query Frame = 1 
Query:   28 MENG----QRRALLTILGVEEDAGAFVLLMGLVLLSLTALACFYCKVYDPIKLWCIKVYHRC-KRKPRDEQAXXXXXXXXXEREHWYLNRTLKIDQKDRDELGPVANVKGLQGGWYGARNGGFDV 387
            ME+G    +RR L  + GV ED GA+VL+ GL++  LT  AC YCKVYDP++ W IK Y+RC K+       XXXXXXXXX R HWYLN+TL+ID+ DRDELGP     GL+GGWYGARNGGFDV
Sbjct:    1 MEDGGLLHERRILFDVFGVSEDDGAYVLIAGLIMGGLTFTACCYCKVYDPLRNWSIKTYNRCCKKXXXXXXXXXXXXXXXXXRRHWYLNQTLQIDRADRDELGPQGARTGLKGGWYGARNGGFDV 125
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1376.2742.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LUC5_ECTSI1.520e-3260.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1376contigF-serratus_M_contig1376:182726..184644 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_004460.1
Exons2
Model size1561
Cds size363
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1376.2742.1prot_F-serratus_M_contig1376.2742.1Fucus serratus malepolypeptideF-serratus_M_contig1376 182753..183473 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929356.643785-UTR-F-serratus_M_contig1376:182725..1827521622929356.643785-UTR-F-serratus_M_contig1376:182725..182752Fucus serratus maleUTRF-serratus_M_contig1376 182726..182752 +
1690962813.9342592-UTR-F-serratus_M_contig1376:182725..1827521690962813.9342592-UTR-F-serratus_M_contig1376:182725..182752Fucus serratus maleUTRF-serratus_M_contig1376 182726..182752 +
1622929356.6938758-UTR-F-serratus_M_contig1376:183473..1846441622929356.6938758-UTR-F-serratus_M_contig1376:183473..184644Fucus serratus maleUTRF-serratus_M_contig1376 183474..184644 +
1690962813.968957-UTR-F-serratus_M_contig1376:183473..1846441690962813.968957-UTR-F-serratus_M_contig1376:183473..184644Fucus serratus maleUTRF-serratus_M_contig1376 183474..184644 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929356.661135-CDS-F-serratus_M_contig1376:182752..1829831622929356.661135-CDS-F-serratus_M_contig1376:182752..182983Fucus serratus maleCDSF-serratus_M_contig1376 182753..182983 +
1690962813.9438303-CDS-F-serratus_M_contig1376:182752..1829831690962813.9438303-CDS-F-serratus_M_contig1376:182752..182983Fucus serratus maleCDSF-serratus_M_contig1376 182753..182983 +
1622929356.677783-CDS-F-serratus_M_contig1376:183341..1834731622929356.677783-CDS-F-serratus_M_contig1376:183341..183473Fucus serratus maleCDSF-serratus_M_contig1376 183342..183473 +
1690962813.9526737-CDS-F-serratus_M_contig1376:183341..1834731690962813.9526737-CDS-F-serratus_M_contig1376:183341..183473Fucus serratus maleCDSF-serratus_M_contig1376 183342..183473 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1376.2742.1

>prot_F-serratus_M_contig1376.2742.1 ID=prot_F-serratus_M_contig1376.2742.1|Name=mRNA_F-serratus_M_contig1376.2742.1|organism=Fucus serratus male|type=polypeptide|length=121bp
MENGQRRALLTILGVEEDAGAFVLLMGLVLLSLTALACFYCKVYDPIKLW
CIKVYHRCKRKPRDEQAPRPEHSPPPEREHWYLNRTLKIDQKDRDELGPV
ANVKGLQGGWYGARNGGFDV*
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mRNA from alignment at F-serratus_M_contig1376:182726..184644+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1376.2742.1 ID=mRNA_F-serratus_M_contig1376.2742.1|Name=mRNA_F-serratus_M_contig1376.2742.1|organism=Fucus serratus male|type=mRNA|length=1919bp|location=Sequence derived from alignment at F-serratus_M_contig1376:182726..184644+ (Fucus serratus male)
GGGGGGGAAGAGGAGGAGGGGGAGGCGATGGAAAACGGGCAGAGACGAGC
GCTCCTAACAATCTTGGGCGTGGAAGAGGATGCAGGCGCTTTTGTCTTGC
TGATGGGCCTGGTGTTGCTCAGTCTGACGGCCCTCGCCTGCTTTTACTGT
AAGGTTTACGACCCTATCAAGCTGTGGTGCATCAAGGTCTATCATCGGTG
CAAGCGGAAGCCAAGAGACGAGCAAGCTCCGCGGCCGGAACACTCTCCAC
CGCCAGAGGTATGCGCTGAAAAATTTGCCTTGCTACCGTTGGGCTCAAAC
GTCAGTAATATATATGATTTGTGTATCATTCACTTTCTCGCTCGCGAGGT
TCAACACAGGAGAGTGGAGGGCTCCATACACAGCGATGACCGGCAGGCGG
GGGGGAGGGGGAGGTACGACCAACGACAAGCATCGCGAAGGCTTTATCGC
CTTGACCACACGACCGCCCTCATTCGCGCATACTCCTCTGCTCATCCCTT
CGTTGATACACTCTCCCGGCCCCCTCTCCGTGCCCCCCCCCCCTCCGGCT
GTTGGCCGTGTGTGTCGATGTGTATGTGTGTGCGTGTATCTTGCCGCTGC
CCCCGCCCTTGCTCAGCGCGAGCACTGGTACCTGAACAGGACGTTGAAGA
TCGACCAGAAGGATCGGGACGAGCTCGGCCCCGTGGCTAACGTGAAGGGG
TTGCAGGGCGGGTGGTACGGCGCGCGAAACGGCGGTTTCGACGTGTAGAA
CTATAACGCCCCTACAATTTCGGTCATACATACTGTAGCAAGTAGTGAAA
GAGAGGAGAGGCTCATCCTCCTATTTTTCTCTCACCCCGGCTCTGGTAGT
TGTACAGTAAAACAGTACAATCGGTGAGCGTTTGGTGGGAAATATCGAAC
AGGATAGCAGGTCCTCTCTTTGCACCCCCTTTGGAACATTTGTTTTACAT
CACCTTGTTGTTTTCTGGTCAGAGCAGAGGTAGCGGGATCATGGTGGGAT
TCTCCCCCCCCCCCCTGCCCGAGAGGGATGACCGGACGCGCGGGACGTTG
GAGAACTTGACTTTGATCGTCCTAATAATACCAGAGCGATATAGGGAGTG
GGTATGGTTTGACCCGCCGTTGGCTGACTCGGTGCCGGGAGTTTTGACGA
TCCTGCCTCAAGGTTGCACTGCGGGGTATCCTTCAGGGACTGTTTTGCCC
CACAGAAAAGACGATCCCTCTCAAAGCGTTCCGTTGTCTCAAGGAGTCCA
TCAATTGGAGGGTGTGGAAAAGAGAGGCGTATATTAATTGGTCCGTGGTG
ACCTGCTGAGGCAGCACTCGTTCGAATCTACCTTGAGGTTTACTGCCCCT
GTGCCGGCGGACTCTCGCCAGTGAACGGCATCGGTACGCAATTGCGCGAC
CCGATAAACTCGGGACTGACCCGATGGCGTATGGCGGTTAAAAATAAATA
TATGGACGCCGCCGCGGAACTCGGGAGGAATCCCGTAAGCAAGCACCAGA
TTCAGCCTGAGTATGGAGATGAGCAGGCTGACGCGGGACGGGACTGCCGA
AACCGTCTCGCGAGACCAAATTCTCAGGCACGAACGCGGACAGGGAATAT
TCATTTTCCCTGTTCAGCTGACCACAAGCAGGATTGGCAACCTTACCCGG
TTGGTCCATACTCTTGGTATATGTGTGGCCATACATGATGCACACGTAAG
TCACCGTTTCATGGATGAGGGGGTCTAACACACACGGTCTAACACACACC
AAGAGCGATGGGGCAATTTACCGTGCGTCGAGTCGTTCGAAGAAAGGGGC
AGGCGTGCTACACGATGAATCCATAACGTCCCCTAACAAGAACAATTATA
TACTTGGTATATTTTCCCTCGGGAGGAACGAAATCTGCGAGACAGGCCAT
TAATATCACGTTATTTGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1376:182726..184644+

>mRNA_F-serratus_M_contig1376.2742.1 ID=mRNA_F-serratus_M_contig1376.2742.1|Name=mRNA_F-serratus_M_contig1376.2742.1|organism=Fucus serratus male|type=CDS|length=726bp|location=Sequence derived from alignment at F-serratus_M_contig1376:182726..184644+ (Fucus serratus male)
ATGGAAAACGGGCAGAGACGAGCGCTCCTAACAATCTTGGGCGTGGAAGA
GGATGCAGGCGCTTTTGTCTTGCTGATGGGCCTGGTGTTGCTCAGTCTGA
CGGCCCTCGCCTGCTTTTACTGTAAGGTTTACGACCCTATCAAGCTGTGG
TGCATCAAGGTCTATCATCGGTGCAAGCGGAAGCCAAGAGACGAGCAAGC
TCCGCGGCCGGAACACTCTCCACCGCCAGAGATGGAAAACGGGCAGAGAC
GAGCGCTCCTAACAATCTTGGGCGTGGAAGAGGATGCAGGCGCTTTTGTC
TTGCTGATGGGCCTGGTGTTGCTCAGTCTGACGGCCCTCGCCTGCTTTTA
CTGTAAGGTTTACGACCCTATCAAGCTGTGGTGCATCAAGGTCTATCATC
GGTGCAAGCGGAAGCCAAGAGACGAGCAAGCTCCGCGGCCGGAACACTCT
CCACCGCCAGAGCGCGAGCACTGGTACCTGAACAGGACGTTGAAGATCGA
CCAGAAGGATCGGGACGAGCTCGGCCCCGTGGCTAACGTGAAGGGGTTGC
AGGGCGGGTGGTACGGCGCGCGAAACGGCGGTTTCGACGTGTAGCGCGAG
CACTGGTACCTGAACAGGACGTTGAAGATCGACCAGAAGGATCGGGACGA
GCTCGGCCCCGTGGCTAACGTGAAGGGGTTGCAGGGCGGGTGGTACGGCG
CGCGAAACGGCGGTTTCGACGTGTAG
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